Wall clock time and date at job start Tue Mar 31 2020 21:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.52316 * 2 1 4 4 C 1.53040 * 109.49900 * 239.91042 * 2 1 3 5 5 C 1.53040 * 109.53915 * 178.68447 * 4 2 1 6 6 C 1.53186 * 109.31165 * 61.36555 * 5 4 2 7 7 N 1.46925 * 108.77891 * 305.36549 * 6 5 4 8 8 C 1.34778 * 120.63195 * 233.62741 * 7 6 5 9 9 O 1.21280 * 119.99621 * 186.32631 * 8 7 6 10 10 C 1.50697 * 119.99919 * 6.33288 * 8 7 6 11 11 C 1.50697 * 109.47196 * 179.97438 * 10 8 7 12 12 C 1.33638 * 126.03920 * 89.99577 * 11 10 8 13 13 N 1.31782 * 114.50415 * 180.02562 * 12 11 10 14 14 C 1.29028 * 117.11912 * 0.02562 * 13 12 11 15 15 S 1.70968 * 110.17151 * 359.72451 * 14 13 12 16 16 C 1.46926 * 118.73902 * 53.60983 * 7 6 5 17 17 H 1.09004 * 109.58682 * 66.31601 * 16 7 6 18 18 C 1.53000 * 109.59004 * 186.60580 * 16 7 6 19 19 C 1.52998 * 109.47145 * 66.19122 * 18 16 7 20 20 N 1.46498 * 109.47174 * 175.74072 * 19 18 16 21 21 C 1.36936 * 120.00255 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99415 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00477 * 180.02562 * 21 20 19 24 24 N 1.31617 * 119.99484 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00240 * 180.27405 * 23 21 20 26 26 H 1.48500 * 109.47200 * 179.72332 * 25 23 21 27 27 H 1.48497 * 109.47046 * 299.71994 * 25 23 21 28 28 H 1.48499 * 109.47178 * 59.72102 * 25 23 21 29 29 H 1.08999 * 109.46985 * 299.92570 * 1 2 3 30 30 H 1.08994 * 109.46842 * 59.92373 * 1 2 3 31 31 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45671 * 58.66491 * 4 2 1 33 33 H 1.08994 * 109.45925 * 298.70709 * 4 2 1 34 34 H 1.08997 * 109.49572 * 301.41974 * 5 4 2 35 35 H 1.08994 * 109.52210 * 181.33290 * 5 4 2 36 36 H 1.08999 * 109.59014 * 185.57679 * 6 5 4 37 37 H 1.09003 * 109.58942 * 65.15469 * 6 5 4 38 38 H 1.09002 * 109.47029 * 299.99573 * 10 8 7 39 39 H 1.08997 * 109.47283 * 59.99506 * 10 8 7 40 40 H 1.08001 * 122.74899 * 0.02562 * 12 11 10 41 41 H 1.08006 * 124.90864 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.46764 * 306.19503 * 18 16 7 43 43 H 1.08993 * 109.46990 * 186.19586 * 18 16 7 44 44 H 1.09000 * 109.46991 * 55.73820 * 19 18 16 45 45 H 1.09006 * 109.47280 * 295.74150 * 19 18 16 46 46 H 0.97003 * 120.00146 * 359.97438 * 20 19 18 47 47 H 0.97004 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7233 -1.2482 5 6 3.5709 -0.6952 -1.2659 6 6 4.1053 -1.4267 -0.0306 7 7 3.5046 -0.8290 1.1697 8 6 4.2812 -0.3855 2.1781 9 8 3.7736 -0.0003 3.2100 10 6 5.7801 -0.3680 2.0232 11 6 6.4090 0.1688 3.2830 12 6 6.7902 -0.5533 4.3409 13 7 7.3157 0.1511 5.3229 14 6 7.3986 1.4274 5.1523 15 16 6.7772 1.8588 3.6191 16 6 2.0413 -0.7237 1.2498 17 1 1.6054 -1.7215 1.3008 18 6 1.6517 0.0707 2.4979 19 6 2.1269 1.5176 2.3505 20 7 1.6659 2.3023 3.4985 21 6 1.9726 3.6341 3.5851 22 1 2.5548 4.1058 2.8072 23 6 1.5363 4.3776 4.6730 24 7 0.8273 3.8026 5.6212 25 14 1.9482 6.1960 4.7873 26 1 1.3652 6.7584 6.0319 27 1 3.4229 6.3690 4.8093 28 1 1.3840 6.9062 3.6115 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6582 -0.2247 -2.1389 33 1 1.6968 -1.7574 -1.2350 34 1 3.9160 0.3386 -1.2540 35 1 3.9339 -1.1897 -2.1668 36 1 5.1896 -1.3247 0.0140 37 1 3.8376 -2.4819 -0.0864 38 1 6.1383 -1.3813 1.8411 39 1 6.0510 0.2698 1.1819 40 1 6.6768 -1.6264 4.3873 41 1 7.8056 2.1220 5.8722 42 1 2.1192 -0.3777 3.3746 43 1 0.5683 0.0543 2.6155 44 1 1.7195 1.9421 1.4330 45 1 3.2160 1.5399 2.3089 46 1 1.1428 1.8788 4.1969 47 1 0.5220 4.3221 6.3813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264511227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:02 Heat of formation + Delta-G solvation = 51.106413 kcal Electronic energy + Delta-G solvation = -28566.472386 eV Core-core repulsion = 24877.676185 eV Total energy + Delta-G solvation = -3688.796201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84848 -39.36860 -37.60752 -35.27020 -33.72005 -32.86728 -32.36189 -30.77713 -28.73666 -27.47545 -26.42359 -25.23554 -24.18671 -23.24104 -22.05196 -21.25729 -20.45655 -19.66098 -18.71679 -17.85711 -17.10089 -16.63498 -16.01580 -15.64117 -15.15798 -14.84838 -14.71530 -14.34814 -14.18264 -13.82445 -13.72868 -13.49465 -13.31208 -13.21036 -13.03493 -12.69043 -12.52128 -12.49365 -12.06746 -11.86836 -11.69484 -11.33346 -11.11273 -11.07406 -10.89509 -10.80478 -10.66272 -10.48648 -10.21438 -10.14702 -9.80547 -9.50801 -9.48739 -9.11026 -8.78751 -8.69366 -8.50025 -8.27593 -6.61959 -5.57361 -2.82091 0.86123 1.56605 1.95234 2.80518 2.93059 3.16808 3.52341 3.55926 3.57723 4.44966 4.50512 4.61595 4.72850 4.74674 4.77481 4.83179 4.95526 5.01179 5.17726 5.20653 5.31108 5.40396 5.42708 5.55034 5.59971 5.64829 5.69976 5.74360 5.78283 5.79097 5.86409 6.00589 6.05118 6.17781 6.27772 6.34043 6.36535 6.51675 6.59984 6.69738 6.80074 7.18878 7.33930 7.57399 7.83816 7.85862 8.48356 8.62509 9.72385 10.37953 10.72014 11.66310 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007333 B = 0.005943 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3817.425166 B = 4710.396761 C = 7659.987312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.108 3.892 7 N -0.612 5.612 8 C 0.500 3.500 9 O -0.474 6.474 10 C -0.062 4.062 11 C -0.204 4.204 12 C 0.041 3.959 13 N -0.475 5.475 14 C 0.011 3.989 15 S 0.159 5.841 16 C 0.163 3.837 17 H 0.065 0.935 18 C -0.141 4.141 19 C 0.166 3.834 20 N -0.725 5.725 21 C -0.223 4.223 22 H 0.063 0.937 23 C -0.019 4.019 24 N -0.936 5.936 25 Si 0.900 3.100 26 H -0.292 1.292 27 H -0.288 1.288 28 H -0.288 1.288 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.169 0.831 41 H 0.196 0.804 42 H 0.109 0.891 43 H 0.054 0.946 44 H 0.001 0.999 45 H 0.027 0.973 46 H 0.381 0.619 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.803 -13.609 -15.139 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.104 0.896 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.015 4.015 7 N -0.348 5.348 8 C 0.286 3.714 9 O -0.347 6.347 10 C -0.104 4.104 11 C -0.326 4.326 12 C -0.111 4.111 13 N -0.188 5.188 14 C -0.285 4.285 15 S 0.413 5.587 16 C 0.060 3.940 17 H 0.083 0.917 18 C -0.178 4.178 19 C 0.039 3.961 20 N -0.368 5.368 21 C -0.355 4.355 22 H 0.081 0.919 23 C -0.214 4.214 24 N -0.586 5.586 25 Si 0.732 3.268 26 H -0.218 1.218 27 H -0.215 1.215 28 H -0.215 1.215 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.186 0.814 41 H 0.213 0.787 42 H 0.127 0.873 43 H 0.072 0.928 44 H 0.019 0.981 45 H 0.044 0.956 46 H 0.214 0.786 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.709 -12.475 -14.564 21.964 hybrid contribution -0.153 0.090 0.307 0.354 sum 10.556 -12.385 -14.258 21.636 Atomic orbital electron populations 1.21785 0.94418 1.01438 1.02594 1.21675 0.96263 1.01054 0.93894 0.89554 1.21590 0.94814 1.00623 0.98106 1.21928 0.96671 1.01500 0.97364 1.21703 0.98043 0.97030 0.84733 1.48015 1.06721 1.62033 1.18007 1.20327 0.88328 0.78531 0.84170 1.90884 1.72755 1.43299 1.27727 1.20093 0.93008 1.02895 0.94440 1.25273 1.09383 0.96044 1.01890 1.21554 1.00056 1.01261 0.88229 1.66287 1.17338 1.05410 1.29790 1.28284 1.04176 0.95404 1.00656 1.84174 1.53498 1.07052 1.14009 1.21276 0.78207 0.98472 0.96063 0.91704 1.22468 0.99982 0.97611 0.97760 1.20901 0.96725 0.88455 0.90067 1.42248 1.64245 1.06987 1.23272 1.19137 1.26655 0.85841 1.03870 0.91853 1.24663 1.01537 0.97718 0.97460 1.69655 1.42112 1.35084 1.11709 0.86357 0.77748 0.85990 0.76709 1.21803 1.21490 1.21537 0.91412 0.92748 0.93069 0.91845 0.92093 0.91331 0.90988 0.90026 0.91477 0.87436 0.88129 0.81416 0.78727 0.87286 0.92804 0.98114 0.95562 0.78604 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.97 37.16 0.33 -1.41 16 2 C -0.11 -1.34 1.98 -90.49 -0.18 -1.52 16 3 H 0.09 1.28 5.93 -51.93 -0.31 0.97 16 4 C -0.11 -1.02 5.17 -26.69 -0.14 -1.16 16 5 C -0.14 -1.05 6.08 -26.61 -0.16 -1.21 16 6 C 0.11 0.85 6.35 -3.71 -0.02 0.83 16 7 N -0.61 -7.38 2.94 -165.22 -0.49 -7.86 16 8 C 0.50 7.22 6.30 -10.99 -0.07 7.15 16 9 O -0.47 -9.24 9.91 5.56 0.06 -9.18 16 10 C -0.06 -0.67 4.60 -29.04 -0.13 -0.81 16 11 C -0.20 -2.80 5.09 -35.92 -0.18 -2.99 16 12 C 0.04 0.59 11.25 -19.18 -0.22 0.38 16 13 N -0.47 -7.52 10.54 -15.75 -0.17 -7.68 16 14 C 0.01 0.16 12.23 51.58 0.63 0.80 16 15 S 0.16 2.31 23.22 -107.50 -2.50 -0.19 16 16 C 0.16 2.21 2.66 -67.59 -0.18 2.03 16 17 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.14 -2.58 4.19 -26.73 -0.11 -2.69 16 19 C 0.17 3.66 4.94 -4.04 -0.02 3.64 16 20 N -0.72 -20.03 5.60 -59.91 -0.34 -20.36 16 21 C -0.22 -6.67 9.99 -15.06 -0.15 -6.82 16 22 H 0.06 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 24 N -0.94 -30.05 13.06 55.49 0.72 -29.32 16 25 Si 0.90 23.55 29.55 -169.99 -5.02 18.52 16 26 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H 0.07 0.98 6.76 -51.93 -0.35 0.63 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.81 7.68 -51.93 -0.40 0.41 16 39 H 0.10 0.92 7.95 -51.93 -0.41 0.51 16 40 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.20 2.20 8.06 -52.48 -0.42 1.77 16 42 H 0.11 2.26 5.55 -53.88 -0.30 1.96 16 43 H 0.05 1.00 6.95 -51.93 -0.36 0.64 16 44 H 0.00 0.03 5.96 -51.93 -0.31 -0.28 16 45 H 0.03 0.61 5.08 -51.93 -0.26 0.35 16 46 H 0.38 11.27 7.67 -40.82 -0.31 10.96 16 47 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -36.54 374.28 -9.88 -46.42 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.10 Total: 8.48 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.70 Total: -4.46 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.26 Total: -65.23 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.06 Total: -9.18 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.52 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.50 Total: -0.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.54 -9.88 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264511227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.530 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds