Wall clock time and date at job start Tue Mar 31 2020 21:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.52316 * 2 1 4 4 C 1.53040 * 109.49900 * 239.91042 * 2 1 3 5 5 C 1.53040 * 109.53915 * 178.68447 * 4 2 1 6 6 C 1.53186 * 109.31165 * 61.36555 * 5 4 2 7 7 N 1.46925 * 108.77891 * 305.36549 * 6 5 4 8 8 C 1.34778 * 120.63195 * 233.62741 * 7 6 5 9 9 O 1.21280 * 119.99621 * 186.32631 * 8 7 6 10 10 C 1.50697 * 119.99919 * 6.33288 * 8 7 6 11 11 C 1.50697 * 109.47196 * 179.97438 * 10 8 7 12 12 C 1.33638 * 126.03920 * 89.99577 * 11 10 8 13 13 N 1.31782 * 114.50415 * 180.02562 * 12 11 10 14 14 C 1.29028 * 117.11912 * 0.02562 * 13 12 11 15 15 S 1.70968 * 110.17151 * 359.72451 * 14 13 12 16 16 C 1.46926 * 118.73902 * 53.60983 * 7 6 5 17 17 H 1.09004 * 109.58682 * 66.31601 * 16 7 6 18 18 C 1.53000 * 109.59004 * 186.60580 * 16 7 6 19 19 C 1.52998 * 109.47145 * 66.19122 * 18 16 7 20 20 N 1.46498 * 109.47174 * 175.74072 * 19 18 16 21 21 C 1.36936 * 120.00255 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99415 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00477 * 180.02562 * 21 20 19 24 24 N 1.31617 * 119.99484 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00240 * 180.27405 * 23 21 20 26 26 H 1.48500 * 109.47200 * 179.72332 * 25 23 21 27 27 H 1.48497 * 109.47046 * 299.71994 * 25 23 21 28 28 H 1.48499 * 109.47178 * 59.72102 * 25 23 21 29 29 H 1.08999 * 109.46985 * 299.92570 * 1 2 3 30 30 H 1.08994 * 109.46842 * 59.92373 * 1 2 3 31 31 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45671 * 58.66491 * 4 2 1 33 33 H 1.08994 * 109.45925 * 298.70709 * 4 2 1 34 34 H 1.08997 * 109.49572 * 301.41974 * 5 4 2 35 35 H 1.08994 * 109.52210 * 181.33290 * 5 4 2 36 36 H 1.08999 * 109.59014 * 185.57679 * 6 5 4 37 37 H 1.09003 * 109.58942 * 65.15469 * 6 5 4 38 38 H 1.09002 * 109.47029 * 299.99573 * 10 8 7 39 39 H 1.08997 * 109.47283 * 59.99506 * 10 8 7 40 40 H 1.08001 * 122.74899 * 0.02562 * 12 11 10 41 41 H 1.08006 * 124.90864 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.46764 * 306.19503 * 18 16 7 43 43 H 1.08993 * 109.46990 * 186.19586 * 18 16 7 44 44 H 1.09000 * 109.46991 * 55.73820 * 19 18 16 45 45 H 1.09006 * 109.47280 * 295.74150 * 19 18 16 46 46 H 0.97003 * 120.00146 * 359.97438 * 20 19 18 47 47 H 0.97004 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7233 -1.2482 5 6 3.5709 -0.6952 -1.2659 6 6 4.1053 -1.4267 -0.0306 7 7 3.5046 -0.8290 1.1697 8 6 4.2812 -0.3855 2.1781 9 8 3.7736 -0.0003 3.2100 10 6 5.7801 -0.3680 2.0232 11 6 6.4090 0.1688 3.2830 12 6 6.7902 -0.5533 4.3409 13 7 7.3157 0.1511 5.3229 14 6 7.3986 1.4274 5.1523 15 16 6.7772 1.8588 3.6191 16 6 2.0413 -0.7237 1.2498 17 1 1.6054 -1.7215 1.3008 18 6 1.6517 0.0707 2.4979 19 6 2.1269 1.5176 2.3505 20 7 1.6659 2.3023 3.4985 21 6 1.9726 3.6341 3.5851 22 1 2.5548 4.1058 2.8072 23 6 1.5363 4.3776 4.6730 24 7 0.8273 3.8026 5.6212 25 14 1.9482 6.1960 4.7873 26 1 1.3652 6.7584 6.0319 27 1 3.4229 6.3690 4.8093 28 1 1.3840 6.9062 3.6115 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6582 -0.2247 -2.1389 33 1 1.6968 -1.7574 -1.2350 34 1 3.9160 0.3386 -1.2540 35 1 3.9339 -1.1897 -2.1668 36 1 5.1896 -1.3247 0.0140 37 1 3.8376 -2.4819 -0.0864 38 1 6.1383 -1.3813 1.8411 39 1 6.0510 0.2698 1.1819 40 1 6.6768 -1.6264 4.3873 41 1 7.8056 2.1220 5.8722 42 1 2.1192 -0.3777 3.3746 43 1 0.5683 0.0543 2.6155 44 1 1.7195 1.9421 1.4330 45 1 3.2160 1.5399 2.3089 46 1 1.1428 1.8788 4.1969 47 1 0.5220 4.3221 6.3813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264511227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:01 Heat of formation + Delta-G solvation = 25.978707 kcal Electronic energy + Delta-G solvation = -28567.562005 eV Core-core repulsion = 24877.676185 eV Total energy + Delta-G solvation = -3689.885820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92831 -40.45999 -38.63890 -36.88643 -35.19456 -34.02981 -33.47449 -32.55789 -30.08986 -28.72345 -27.38734 -26.55472 -25.55113 -24.64431 -23.62765 -22.21905 -21.54617 -20.76188 -19.81552 -19.09212 -18.94130 -17.86480 -17.17728 -16.72619 -16.62987 -16.18908 -15.80905 -15.68595 -15.33912 -15.08963 -14.88640 -14.79442 -14.66827 -14.32173 -14.26307 -14.05623 -13.68256 -13.40019 -13.22572 -13.13117 -12.88254 -12.86611 -12.53713 -12.39971 -12.31015 -12.13540 -11.99493 -11.91788 -11.67241 -11.56537 -11.34026 -11.14763 -10.80107 -10.62943 -10.25347 -9.93280 -9.66138 -9.40539 -8.84260 -7.91772 -5.18104 -0.22957 0.49825 0.85438 1.41052 1.45976 1.52009 1.74824 1.86273 2.19284 2.56195 3.40429 3.45174 3.59167 3.74128 3.83778 3.92869 4.00298 4.12828 4.16325 4.18531 4.32395 4.37579 4.41485 4.52594 4.59934 4.64932 4.66133 4.71510 4.78566 4.87411 4.91181 4.94816 4.97054 5.07974 5.16634 5.23636 5.29881 5.31186 5.38170 5.44807 5.48767 5.54572 5.61969 5.86572 6.30159 6.59068 6.75302 7.34294 7.42236 8.16642 8.39814 9.32763 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007333 B = 0.005943 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3817.425166 B = 4710.396761 C = 7659.987312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.054 0.946 4 C -0.108 4.108 5 C -0.133 4.133 6 C 0.100 3.900 7 N -0.607 5.607 8 C 0.493 3.507 9 O -0.537 6.537 10 C -0.056 4.056 11 C -0.200 4.200 12 C 0.025 3.975 13 N -0.500 5.500 14 C 0.006 3.994 15 S 0.129 5.871 16 C 0.168 3.832 17 H 0.084 0.916 18 C -0.127 4.127 19 C 0.176 3.824 20 N -0.739 5.739 21 C -0.233 4.233 22 H 0.067 0.933 23 C -0.081 4.081 24 N -0.974 5.974 25 Si 0.970 3.030 26 H -0.294 1.294 27 H -0.277 1.277 28 H -0.276 1.276 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.123 0.877 40 H 0.189 0.811 41 H 0.218 0.782 42 H 0.086 0.914 43 H 0.040 0.960 44 H -0.002 1.002 45 H 0.023 0.977 46 H 0.366 0.634 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.193 -15.035 -18.143 26.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.171 4.171 6 C -0.021 4.021 7 N -0.342 5.342 8 C 0.281 3.719 9 O -0.415 6.415 10 C -0.098 4.098 11 C -0.321 4.321 12 C -0.126 4.126 13 N -0.214 5.214 14 C -0.291 4.291 15 S 0.382 5.618 16 C 0.065 3.935 17 H 0.102 0.898 18 C -0.165 4.165 19 C 0.050 3.950 20 N -0.379 5.379 21 C -0.365 4.365 22 H 0.085 0.915 23 C -0.272 4.272 24 N -0.626 5.626 25 Si 0.798 3.202 26 H -0.220 1.220 27 H -0.203 1.203 28 H -0.202 1.202 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.170 0.830 39 H 0.141 0.859 40 H 0.206 0.794 41 H 0.234 0.766 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.041 0.959 46 H 0.196 0.804 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.131 -13.937 -17.664 25.562 hybrid contribution -0.605 0.464 1.190 1.414 sum 11.526 -13.472 -16.473 24.202 Atomic orbital electron populations 1.21766 0.94543 1.02383 1.01356 1.21594 0.96172 0.99558 0.95135 0.92734 1.21566 0.95932 1.01042 0.96049 1.21938 0.95470 1.01123 0.98618 1.22114 0.99513 0.97888 0.82553 1.48133 1.05862 1.61220 1.18944 1.20967 0.89868 0.77387 0.83638 1.90878 1.74087 1.46319 1.30199 1.20241 0.90066 1.05764 0.93690 1.25587 1.08737 0.94929 1.02896 1.21940 1.00182 1.02328 0.88144 1.66305 1.18288 1.06084 1.30741 1.28700 1.03950 0.95490 1.00935 1.84215 1.54049 1.08805 1.14749 1.21131 0.79792 0.98506 0.94091 0.89774 1.22227 0.98647 0.95788 0.99788 1.20963 0.96159 0.90052 0.87800 1.42503 1.64177 1.06933 1.24326 1.19514 1.26070 0.87003 1.03878 0.91520 1.25545 1.01905 1.02555 0.97214 1.69843 1.43616 1.36786 1.12315 0.85257 0.77917 0.80207 0.76774 1.21961 1.20302 1.20185 0.94881 0.91732 0.91012 0.91120 0.90305 0.92767 0.87749 0.87289 0.89112 0.83018 0.85873 0.79428 0.76573 0.89608 0.94168 0.98408 0.95948 0.80377 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.97 71.98 0.65 -2.69 16 2 C -0.11 -2.44 1.98 -10.71 -0.02 -2.46 16 3 H 0.05 1.61 5.93 -2.39 -0.01 1.60 16 4 C -0.11 -1.56 5.17 30.62 0.16 -1.40 16 5 C -0.13 -1.47 6.08 30.67 0.19 -1.28 16 6 C 0.10 1.10 6.35 86.36 0.55 1.65 16 7 N -0.61 -13.23 2.94 -795.02 -2.34 -15.57 16 8 C 0.49 13.61 6.30 87.66 0.55 14.16 16 9 O -0.54 -21.42 9.91 -3.03 -0.03 -21.45 16 10 C -0.06 -1.06 4.60 29.10 0.13 -0.93 16 11 C -0.20 -5.29 5.09 24.64 0.13 -5.16 16 12 C 0.03 0.71 11.25 83.66 0.94 1.65 16 13 N -0.50 -15.84 10.54 -203.75 -2.15 -17.99 16 14 C 0.01 0.16 12.23 130.65 1.60 1.76 16 15 S 0.13 3.75 23.22 -56.49 -1.31 2.44 16 16 C 0.17 4.38 2.66 44.98 0.12 4.50 16 17 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 18 C -0.13 -4.84 4.19 30.59 0.13 -4.72 16 19 C 0.18 8.10 4.94 86.38 0.43 8.53 16 20 N -0.74 -42.75 5.60 -343.45 -1.92 -44.67 16 21 C -0.23 -14.30 9.99 84.03 0.84 -13.46 16 22 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 24 N -0.97 -64.59 13.06 21.65 0.28 -64.31 16 25 Si 0.97 49.23 29.55 68.60 2.03 51.26 16 26 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 27 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 28 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 29 H 0.03 0.98 6.76 -2.39 -0.02 0.97 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.11 0.65 5.93 -2.39 -0.01 0.63 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.15 1.54 7.68 -2.39 -0.02 1.53 16 39 H 0.12 1.82 7.95 -2.39 -0.02 1.80 16 40 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.22 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.09 3.76 5.55 -33.24 -0.18 3.58 16 43 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 44 H 0.00 -0.08 5.96 -2.39 -0.01 -0.09 16 45 H 0.02 1.08 5.08 -2.38 -0.01 1.07 16 46 H 0.37 22.93 7.67 -92.71 -0.71 22.22 16 47 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -84.30 374.28 1.51 -82.79 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.10 Total: 31.91 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 6.85 Total: -4.40 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -6.13 Total: -142.54 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.03 Total: -21.45 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.26 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.31 Total: 2.44 kcal Total: -84.30 1.51 -82.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264511227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.770 kcal (2) G-P(sol) polarization free energy of solvation -84.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds