Wall clock time and date at job start Tue Mar 31 2020 21:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52596 * 2 1 4 4 C 1.53039 * 109.50100 * 239.91228 * 2 1 3 5 5 C 1.53043 * 109.53447 * 301.42032 * 4 2 1 6 6 C 1.53192 * 109.31109 * 298.62647 * 5 4 2 7 7 N 1.46927 * 108.77412 * 54.63939 * 6 5 4 8 8 C 1.34769 * 120.62933 * 126.41394 * 7 6 5 9 9 O 1.21280 * 120.00241 * 185.40712 * 8 7 6 10 10 C 1.50704 * 120.00345 * 5.40395 * 8 7 6 11 11 C 1.50701 * 109.47442 * 180.02562 * 10 8 7 12 12 C 1.33644 * 126.03706 * 89.71274 * 11 10 8 13 13 N 1.31776 * 114.49916 * 179.78983 * 12 11 10 14 14 C 1.29033 * 117.12447 * 0.52033 * 13 12 11 15 15 S 1.70984 * 110.16673 * 359.71844 * 14 13 12 16 16 C 1.46925 * 118.73754 * 306.39308 * 7 6 5 17 17 H 1.09005 * 109.58383 * 293.67539 * 16 7 6 18 18 C 1.52999 * 109.58412 * 173.39936 * 16 7 6 19 19 C 1.53006 * 109.46879 * 180.02562 * 18 16 7 20 20 N 1.46504 * 109.46868 * 175.07006 * 19 18 16 21 21 C 1.36938 * 119.99847 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99701 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00286 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99494 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00432 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46911 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47285 * 240.00484 * 25 23 21 28 28 H 1.48498 * 109.46986 * 119.99986 * 25 23 21 29 29 H 1.09000 * 109.46834 * 299.92311 * 1 2 3 30 30 H 1.09006 * 109.46914 * 59.92068 * 1 2 3 31 31 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46301 * 181.39619 * 4 2 1 33 33 H 1.09011 * 109.44460 * 61.42494 * 4 2 1 34 34 H 1.09000 * 109.49232 * 178.67974 * 5 4 2 35 35 H 1.08995 * 109.49933 * 58.58328 * 5 4 2 36 36 H 1.09007 * 109.58558 * 294.85084 * 6 5 4 37 37 H 1.08995 * 109.58513 * 174.42572 * 6 5 4 38 38 H 1.09001 * 109.47036 * 300.00079 * 10 8 7 39 39 H 1.08996 * 109.46884 * 59.99930 * 10 8 7 40 40 H 1.07996 * 122.74536 * 359.97438 * 12 11 10 41 41 H 1.07999 * 124.91639 * 179.67876 * 14 13 12 42 42 H 1.08994 * 109.47799 * 60.05364 * 18 16 7 43 43 H 1.08999 * 109.46827 * 300.04991 * 18 16 7 44 44 H 1.08992 * 109.47463 * 55.06530 * 19 18 16 45 45 H 1.09002 * 109.46848 * 295.06478 * 19 18 16 46 46 H 0.96993 * 119.99912 * 359.97438 * 20 19 18 47 47 H 0.96996 * 120.00257 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7232 -1.2482 5 6 1.5029 -2.1559 -1.2657 6 6 2.0139 -2.9040 -0.0305 7 7 1.6515 -2.1380 1.1698 8 6 0.9748 -2.7218 2.1785 9 8 0.5958 -2.0569 3.1193 10 6 0.6888 -4.2009 2.1375 11 6 -0.0752 -4.5994 3.3738 12 6 -1.4049 -4.6079 3.5077 13 7 -1.8326 -5.0021 4.6902 14 6 -0.9374 -5.3167 5.5646 15 16 0.6270 -5.1290 4.9006 16 6 2.0413 -0.7237 1.2496 17 1 3.1274 -0.6463 1.3006 18 6 1.4229 -0.0910 2.4979 19 6 1.8299 1.3818 2.5781 20 7 1.1443 2.0171 3.7062 21 6 1.3551 3.3428 3.9769 22 1 2.0271 3.9199 3.3589 23 6 0.7052 3.9450 5.0454 24 7 -0.1133 3.2415 5.7988 25 14 0.9932 5.7532 5.4150 26 1 1.9508 6.3137 4.4280 27 1 1.5520 5.8958 6.7835 28 1 -0.2944 6.4876 5.3270 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1305 -0.7446 -1.2351 33 1 1.6985 -0.1959 -2.1388 34 1 1.8480 -2.6630 -2.1668 35 1 0.4132 -2.1355 -1.2539 36 1 3.0979 -3.0043 -0.0865 37 1 1.5553 -3.8918 0.0141 38 1 0.0945 -4.4317 1.2534 39 1 1.6285 -4.7516 2.0974 40 1 -2.0741 -4.3185 2.7110 41 1 -1.1461 -5.6498 6.5706 42 1 1.7788 -0.6146 3.3851 43 1 0.3369 -0.1658 2.4431 44 1 1.5518 1.8865 1.6530 45 1 2.9081 1.4534 2.7212 46 1 0.5412 1.4987 4.2614 47 1 -0.2626 2.3025 5.6071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264511228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:05 Heat of formation + Delta-G solvation = 35.234001 kcal Electronic energy + Delta-G solvation = -27922.172281 eV Core-core repulsion = 24232.687801 eV Total energy + Delta-G solvation = -3689.484481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94084 -39.65604 -37.85963 -35.49211 -33.95236 -33.07435 -32.55638 -30.73566 -28.66127 -27.65920 -26.70636 -25.25593 -24.28081 -23.67458 -22.44942 -20.91510 -20.66286 -19.91975 -18.55603 -18.09220 -17.29521 -16.74697 -16.14374 -16.06911 -15.37345 -15.04664 -14.64487 -14.56978 -14.23881 -14.12285 -14.00364 -13.68254 -13.64576 -13.40939 -13.19912 -12.99656 -12.88561 -12.54868 -12.39052 -11.92512 -11.60366 -11.40531 -11.30297 -11.21478 -11.04867 -10.67726 -10.60451 -10.45397 -10.35633 -10.17147 -9.96054 -9.77075 -9.42487 -9.12668 -9.05714 -8.78401 -8.74046 -8.51123 -6.83875 -5.97755 -2.95690 0.56677 1.24088 1.62299 2.57761 2.67254 2.95431 3.57324 3.65324 3.74386 4.18799 4.32840 4.43264 4.56242 4.64246 4.73930 4.77291 4.78012 4.88185 5.01357 5.06982 5.12658 5.17650 5.27132 5.47525 5.51024 5.53712 5.60884 5.67933 5.69581 5.74931 5.80553 5.96918 6.01291 6.03603 6.06570 6.20109 6.26144 6.30769 6.45536 6.53261 6.62673 7.03045 7.14386 7.36419 7.58899 7.93272 8.19318 8.89467 9.39363 10.25861 10.42606 11.51418 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.003798 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.601010 B = 7370.115068 C = 9904.248900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.107 3.893 7 N -0.607 5.607 8 C 0.508 3.492 9 O -0.503 6.503 10 C -0.064 4.064 11 C -0.201 4.201 12 C 0.046 3.954 13 N -0.470 5.470 14 C 0.017 3.983 15 S 0.134 5.866 16 C 0.158 3.842 17 H 0.070 0.930 18 C -0.115 4.115 19 C 0.152 3.848 20 N -0.742 5.742 21 C -0.329 4.329 22 H 0.063 0.937 23 C -0.048 4.048 24 N -0.947 5.947 25 Si 1.086 2.914 26 H -0.296 1.296 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.172 0.828 41 H 0.198 0.802 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.017 0.983 45 H 0.010 0.990 46 H 0.368 0.632 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -22.367 -14.612 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.152 4.152 5 C -0.176 4.176 6 C -0.017 4.017 7 N -0.342 5.342 8 C 0.294 3.706 9 O -0.377 6.377 10 C -0.106 4.106 11 C -0.323 4.323 12 C -0.105 4.105 13 N -0.183 5.183 14 C -0.280 4.280 15 S 0.386 5.614 16 C 0.055 3.945 17 H 0.088 0.912 18 C -0.152 4.152 19 C 0.024 3.976 20 N -0.387 5.387 21 C -0.460 4.460 22 H 0.081 0.919 23 C -0.246 4.246 24 N -0.593 5.593 25 Si 0.917 3.083 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.189 0.811 41 H 0.215 0.785 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.035 0.965 45 H 0.028 0.972 46 H 0.201 0.799 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.638 -20.828 -12.634 24.798 hybrid contribution -0.249 -1.126 -1.644 2.008 sum 4.389 -21.954 -14.278 26.554 Atomic orbital electron populations 1.21861 0.94698 1.01437 1.02217 1.21573 0.96977 1.00036 0.93835 0.89417 1.21562 1.00373 0.95190 0.98114 1.21963 1.01874 0.96539 0.97181 1.21748 1.00403 0.94851 0.84650 1.48100 1.56753 1.11547 1.17808 1.20395 0.78433 0.89102 0.82687 1.90903 1.49387 1.63320 1.34114 1.20131 1.01118 0.94531 0.94860 1.25281 0.97165 1.10490 0.99323 1.21649 0.92607 1.01107 0.95169 1.66295 1.36893 1.13530 1.01586 1.28349 0.91349 1.04378 1.03936 1.83957 1.12309 1.59635 1.05461 1.21309 0.98327 0.78588 0.96237 0.91231 1.22287 1.02094 0.95121 0.95737 1.20764 0.94773 0.90959 0.91120 1.42354 1.54011 1.09066 1.33304 1.20099 1.25407 0.86941 1.13562 0.91915 1.25752 0.97663 1.06422 0.94727 1.70773 1.38280 1.09243 1.40959 0.83152 0.75402 0.74355 0.75381 1.22211 1.22079 1.22089 0.91453 0.93175 0.93008 0.91885 0.91676 0.90939 0.90987 0.91272 0.90007 0.87097 0.87876 0.81101 0.78506 0.90200 0.90216 0.96483 0.97170 0.79899 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.20 37.16 0.30 -1.61 16 2 C -0.11 -1.28 2.31 -90.50 -0.21 -1.49 16 3 H 0.09 1.18 6.66 -51.93 -0.35 0.84 16 4 C -0.11 -1.00 5.43 -26.69 -0.14 -1.15 16 5 C -0.14 -0.95 5.74 -26.61 -0.15 -1.11 16 6 C 0.11 0.74 6.33 -3.71 -0.02 0.72 16 7 N -0.61 -6.72 2.41 -165.22 -0.40 -7.12 16 8 C 0.51 6.46 7.60 -10.99 -0.08 6.38 16 9 O -0.50 -8.90 11.44 5.56 0.06 -8.84 16 10 C -0.06 -0.56 4.64 -29.03 -0.13 -0.70 16 11 C -0.20 -2.25 5.09 -35.92 -0.18 -2.43 16 12 C 0.05 0.57 11.25 -19.19 -0.22 0.36 16 13 N -0.47 -6.33 10.54 -15.75 -0.17 -6.50 16 14 C 0.02 0.19 12.23 51.59 0.63 0.82 16 15 S 0.13 1.41 23.22 -107.50 -2.50 -1.09 16 16 C 0.16 2.15 2.72 -67.60 -0.18 1.97 16 17 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.11 -2.13 2.77 -26.73 -0.07 -2.20 16 19 C 0.15 3.36 6.06 -4.04 -0.02 3.33 16 20 N -0.74 -20.62 5.60 -59.90 -0.34 -20.95 16 21 C -0.33 -9.96 9.99 -15.06 -0.15 -10.11 16 22 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.05 -1.49 5.50 -17.43 -0.10 -1.59 16 24 N -0.95 -31.24 13.70 55.49 0.76 -30.48 16 25 Si 1.09 27.41 29.92 -169.99 -5.09 22.33 16 26 H -0.30 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.07 1.12 6.34 -51.93 -0.33 0.79 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.64 5.97 -51.93 -0.31 0.33 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.56 6.33 -51.93 -0.33 0.23 16 36 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.08 0.38 5.96 -51.93 -0.31 0.07 16 38 H 0.11 0.67 7.46 -51.93 -0.39 0.29 16 39 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.08 1.67 6.45 -51.93 -0.33 1.33 16 43 H 0.08 1.63 5.21 -51.93 -0.27 1.36 16 44 H 0.02 0.38 6.33 -51.93 -0.33 0.05 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.37 10.73 6.50 -40.82 -0.27 10.46 16 47 H 0.26 8.50 6.77 -40.82 -0.28 8.22 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -37.74 373.06 -9.70 -47.44 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.92 Total: 8.40 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.74 Total: -8.80 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.14 Total: -65.06 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.06 Total: -8.84 kcal Atomic # 14 Polarization: 27.41 SS G_CDS: -5.09 Total: 22.33 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.50 Total: -1.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.74 -9.70 -47.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264511228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.669 kcal (2) G-P(sol) polarization free energy of solvation -37.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds