Wall clock time and date at job start Tue Mar 31 2020 21:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52596 * 2 1 4 4 C 1.53039 * 109.50100 * 239.91228 * 2 1 3 5 5 C 1.53043 * 109.53447 * 301.42032 * 4 2 1 6 6 C 1.53192 * 109.31109 * 298.62647 * 5 4 2 7 7 N 1.46927 * 108.77412 * 54.63939 * 6 5 4 8 8 C 1.34769 * 120.62933 * 126.41394 * 7 6 5 9 9 O 1.21280 * 120.00241 * 185.40712 * 8 7 6 10 10 C 1.50704 * 120.00345 * 5.40395 * 8 7 6 11 11 C 1.50701 * 109.47442 * 180.02562 * 10 8 7 12 12 C 1.33644 * 126.03706 * 89.71274 * 11 10 8 13 13 N 1.31776 * 114.49916 * 179.78983 * 12 11 10 14 14 C 1.29033 * 117.12447 * 0.52033 * 13 12 11 15 15 S 1.70984 * 110.16673 * 359.71844 * 14 13 12 16 16 C 1.46925 * 118.73754 * 306.39308 * 7 6 5 17 17 H 1.09005 * 109.58383 * 293.67539 * 16 7 6 18 18 C 1.52999 * 109.58412 * 173.39936 * 16 7 6 19 19 C 1.53006 * 109.46879 * 180.02562 * 18 16 7 20 20 N 1.46504 * 109.46868 * 175.07006 * 19 18 16 21 21 C 1.36938 * 119.99847 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99701 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00286 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99494 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00432 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46911 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47285 * 240.00484 * 25 23 21 28 28 H 1.48498 * 109.46986 * 119.99986 * 25 23 21 29 29 H 1.09000 * 109.46834 * 299.92311 * 1 2 3 30 30 H 1.09006 * 109.46914 * 59.92068 * 1 2 3 31 31 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46301 * 181.39619 * 4 2 1 33 33 H 1.09011 * 109.44460 * 61.42494 * 4 2 1 34 34 H 1.09000 * 109.49232 * 178.67974 * 5 4 2 35 35 H 1.08995 * 109.49933 * 58.58328 * 5 4 2 36 36 H 1.09007 * 109.58558 * 294.85084 * 6 5 4 37 37 H 1.08995 * 109.58513 * 174.42572 * 6 5 4 38 38 H 1.09001 * 109.47036 * 300.00079 * 10 8 7 39 39 H 1.08996 * 109.46884 * 59.99930 * 10 8 7 40 40 H 1.07996 * 122.74536 * 359.97438 * 12 11 10 41 41 H 1.07999 * 124.91639 * 179.67876 * 14 13 12 42 42 H 1.08994 * 109.47799 * 60.05364 * 18 16 7 43 43 H 1.08999 * 109.46827 * 300.04991 * 18 16 7 44 44 H 1.08992 * 109.47463 * 55.06530 * 19 18 16 45 45 H 1.09002 * 109.46848 * 295.06478 * 19 18 16 46 46 H 0.96993 * 119.99912 * 359.97438 * 20 19 18 47 47 H 0.96996 * 120.00257 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7232 -1.2482 5 6 1.5029 -2.1559 -1.2657 6 6 2.0139 -2.9040 -0.0305 7 7 1.6515 -2.1380 1.1698 8 6 0.9748 -2.7218 2.1785 9 8 0.5958 -2.0569 3.1193 10 6 0.6888 -4.2009 2.1375 11 6 -0.0752 -4.5994 3.3738 12 6 -1.4049 -4.6079 3.5077 13 7 -1.8326 -5.0021 4.6902 14 6 -0.9374 -5.3167 5.5646 15 16 0.6270 -5.1290 4.9006 16 6 2.0413 -0.7237 1.2496 17 1 3.1274 -0.6463 1.3006 18 6 1.4229 -0.0910 2.4979 19 6 1.8299 1.3818 2.5781 20 7 1.1443 2.0171 3.7062 21 6 1.3551 3.3428 3.9769 22 1 2.0271 3.9199 3.3589 23 6 0.7052 3.9450 5.0454 24 7 -0.1133 3.2415 5.7988 25 14 0.9932 5.7532 5.4150 26 1 1.9508 6.3137 4.4280 27 1 1.5520 5.8958 6.7835 28 1 -0.2944 6.4876 5.3270 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1305 -0.7446 -1.2351 33 1 1.6985 -0.1959 -2.1388 34 1 1.8480 -2.6630 -2.1668 35 1 0.4132 -2.1355 -1.2539 36 1 3.0979 -3.0043 -0.0865 37 1 1.5553 -3.8918 0.0141 38 1 0.0945 -4.4317 1.2534 39 1 1.6285 -4.7516 2.0974 40 1 -2.0741 -4.3185 2.7110 41 1 -1.1461 -5.6498 6.5706 42 1 1.7788 -0.6146 3.3851 43 1 0.3369 -0.1658 2.4431 44 1 1.5518 1.8865 1.6530 45 1 2.9081 1.4534 2.7212 46 1 0.5412 1.4987 4.2614 47 1 -0.2626 2.3025 5.6071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264511228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:04 Heat of formation + Delta-G solvation = 9.503024 kcal Electronic energy + Delta-G solvation = -27923.288060 eV Core-core repulsion = 24232.687801 eV Total energy + Delta-G solvation = -3690.600260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.91846 -40.54226 -38.86100 -37.28164 -35.29740 -34.20859 -33.58166 -32.40751 -29.92879 -28.82467 -27.70094 -26.38993 -25.53733 -24.99081 -24.07551 -22.17111 -21.62823 -20.80836 -19.55952 -19.33171 -18.93764 -17.84209 -17.22477 -17.00117 -16.61487 -16.31312 -15.99453 -15.75471 -15.46406 -15.30413 -15.15286 -15.03114 -14.87443 -14.60346 -14.18868 -14.11443 -13.82144 -13.52778 -13.37093 -13.16435 -12.78416 -12.74148 -12.63543 -12.40159 -12.33314 -12.15612 -11.88835 -11.85297 -11.77101 -11.47605 -11.31131 -11.18428 -10.93678 -10.66337 -10.36519 -10.06457 -9.81343 -9.49373 -9.15486 -8.46521 -5.39302 -0.28794 0.43099 0.76967 1.53314 1.64395 1.67122 1.77175 1.78772 2.07780 2.68355 3.35462 3.40021 3.43517 3.66280 3.72904 3.86546 3.91637 3.95322 4.08843 4.12524 4.20426 4.32591 4.34056 4.37439 4.46576 4.51893 4.57350 4.63604 4.71514 4.72368 4.76351 4.79055 4.89336 4.96219 5.10040 5.15391 5.18111 5.21847 5.28650 5.36170 5.41633 5.52542 5.54294 5.71066 6.40575 6.47562 6.72166 7.03753 7.25222 7.93890 8.08839 9.05171 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008896 B = 0.003798 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.601010 B = 7370.115068 C = 9904.248900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.069 0.931 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.099 3.901 7 N -0.602 5.602 8 C 0.500 3.500 9 O -0.565 6.565 10 C -0.055 4.055 11 C -0.206 4.206 12 C 0.024 3.976 13 N -0.506 5.506 14 C 0.009 3.991 15 S 0.147 5.853 16 C 0.164 3.836 17 H 0.078 0.922 18 C -0.089 4.089 19 C 0.151 3.849 20 N -0.759 5.759 21 C -0.336 4.336 22 H 0.068 0.932 23 C -0.109 4.109 24 N -0.975 5.975 25 Si 1.138 2.862 26 H -0.268 1.268 27 H -0.288 1.288 28 H -0.288 1.288 29 H 0.021 0.979 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.179 0.821 41 H 0.223 0.777 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.024 0.976 45 H 0.010 0.990 46 H 0.355 0.645 47 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -23.684 -17.411 30.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.087 0.913 4 C -0.147 4.147 5 C -0.172 4.172 6 C -0.022 4.022 7 N -0.335 5.335 8 C 0.288 3.712 9 O -0.444 6.444 10 C -0.097 4.097 11 C -0.328 4.328 12 C -0.127 4.127 13 N -0.220 5.220 14 C -0.288 4.288 15 S 0.400 5.600 16 C 0.060 3.940 17 H 0.096 0.904 18 C -0.127 4.127 19 C 0.025 3.975 20 N -0.403 5.403 21 C -0.467 4.467 22 H 0.086 0.914 23 C -0.299 4.299 24 N -0.624 5.624 25 Si 0.962 3.038 26 H -0.192 1.192 27 H -0.215 1.215 28 H -0.215 1.215 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.196 0.804 41 H 0.239 0.761 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.028 0.972 46 H 0.186 0.814 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.492 -22.197 -15.520 27.852 hybrid contribution -0.781 -0.752 -0.812 1.355 sum 5.711 -22.949 -16.332 28.740 Atomic orbital electron populations 1.21785 0.95719 1.01541 1.00483 1.21532 0.95975 0.99526 0.95160 0.91251 1.21541 1.01093 0.96151 0.95905 1.21977 1.01409 0.95316 0.98454 1.22173 1.02029 0.95613 0.82409 1.48179 1.55876 1.10463 1.19012 1.21129 0.77466 0.90616 0.81952 1.90895 1.51990 1.65020 1.36491 1.20247 1.02951 0.91395 0.95068 1.25609 0.97063 1.09771 1.00315 1.21895 0.93555 1.01899 0.95377 1.66300 1.38224 1.14930 1.02502 1.28832 0.91489 1.03725 1.04740 1.83842 1.11782 1.59058 1.05339 1.21070 0.98248 0.80473 0.94220 0.90387 1.21942 1.00649 0.92581 0.97529 1.20956 0.94003 0.93246 0.89328 1.42655 1.54311 1.08722 1.34606 1.20505 1.24790 0.88068 1.13364 0.91358 1.27447 0.97127 1.10604 0.94745 1.70921 1.40426 1.08595 1.42420 0.82517 0.76104 0.69182 0.76040 1.19231 1.21493 1.21510 0.95995 0.91934 0.92019 0.90649 0.90852 0.87703 0.91712 0.89338 0.86718 0.83565 0.84624 0.80385 0.76060 0.92951 0.92676 0.95817 0.97161 0.81382 0.95048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.20 71.98 0.59 -3.07 16 2 C -0.10 -2.40 2.31 -10.72 -0.02 -2.42 16 3 H 0.07 1.86 6.66 -2.39 -0.02 1.84 16 4 C -0.11 -1.54 5.43 30.62 0.17 -1.38 16 5 C -0.13 -1.24 5.74 30.67 0.18 -1.06 16 6 C 0.10 0.91 6.33 86.36 0.55 1.46 16 7 N -0.60 -12.09 2.41 -795.03 -1.92 -14.01 16 8 C 0.50 12.25 7.60 87.66 0.67 12.91 16 9 O -0.57 -20.88 11.44 -3.03 -0.03 -20.92 16 10 C -0.05 -0.81 4.64 29.10 0.14 -0.68 16 11 C -0.21 -4.42 5.09 24.64 0.13 -4.30 16 12 C 0.02 0.59 11.25 83.66 0.94 1.53 16 13 N -0.51 -13.91 10.54 -203.74 -2.15 -16.06 16 14 C 0.01 0.19 12.23 130.65 1.60 1.79 16 15 S 0.15 3.02 23.22 -56.49 -1.31 1.71 16 16 C 0.16 4.37 2.72 44.97 0.12 4.49 16 17 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 18 C -0.09 -3.49 2.77 30.60 0.08 -3.40 16 19 C 0.15 6.98 6.06 86.38 0.52 7.50 16 20 N -0.76 -44.24 5.60 -343.44 -1.92 -46.16 16 21 C -0.34 -20.83 9.99 84.03 0.84 -19.99 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 23 C -0.11 -6.85 5.50 84.86 0.47 -6.38 16 24 N -0.98 -66.59 13.70 21.65 0.30 -66.29 16 25 Si 1.14 55.39 29.92 68.60 2.05 57.44 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 29 H 0.02 0.76 6.34 -2.39 -0.02 0.74 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 1.48 5.97 -2.39 -0.01 1.47 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.06 0.74 6.33 -2.39 -0.02 0.72 16 36 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.11 0.37 5.96 -2.39 -0.01 0.35 16 38 H 0.15 1.14 7.46 -2.39 -0.02 1.12 16 39 H 0.14 1.16 8.12 -2.39 -0.02 1.14 16 40 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.05 2.34 6.45 -2.39 -0.02 2.32 16 43 H 0.05 2.44 5.21 -2.39 -0.01 2.43 16 44 H 0.02 1.07 6.33 -2.39 -0.02 1.06 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.36 22.15 6.50 -92.71 -0.60 21.54 16 47 H 0.24 16.71 6.77 -92.71 -0.63 16.08 16 Total: -1.00 -88.05 373.06 2.50 -85.55 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.53 Total: 31.74 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 6.96 Total: -13.00 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -5.69 Total: -142.52 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.03 Total: -20.92 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 2.05 Total: 57.44 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.31 Total: 1.71 kcal Total: -88.05 2.50 -85.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264511228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.053 kcal (2) G-P(sol) polarization free energy of solvation -88.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds