Wall clock time and date at job start Tue Mar 31 2020 19:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46837 * 2 1 4 4 N 1.46502 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99996 * 275.31189 * 4 3 2 6 6 H 1.08000 * 120.00163 * 37.57602 * 5 4 3 7 7 C 1.38816 * 119.99548 * 217.57458 * 5 4 3 8 8 N 1.31616 * 120.00083 * 21.42862 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 201.42248 * 7 5 4 10 10 H 1.48508 * 109.47092 * 90.00303 * 9 7 5 11 11 H 1.48500 * 109.47616 * 210.00060 * 9 7 5 12 12 H 1.48503 * 109.47387 * 330.00837 * 9 7 5 13 13 C 1.46503 * 119.99634 * 95.30687 * 4 3 2 14 14 C 1.53006 * 109.47213 * 270.00031 * 13 4 3 15 15 N 1.46496 * 109.46750 * 180.02562 * 14 13 4 16 16 C 1.34778 * 119.99507 * 179.97438 * 15 14 13 17 17 O 1.21682 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.46685 * 119.99937 * 179.97438 * 16 15 14 19 19 C 1.35664 * 126.12950 * 0.02562 * 18 16 15 20 20 N 1.30948 * 114.18928 * 179.72598 * 19 18 16 21 21 C 1.29427 * 117.36324 * 0.51562 * 20 19 18 22 22 C 1.50701 * 124.80409 * 179.75958 * 21 20 19 23 23 C 1.53008 * 109.46620 * 89.70177 * 22 21 20 24 24 C 1.52998 * 117.49817 * 243.62243 * 23 22 21 25 25 C 1.53000 * 60.00065 * 252.51180 * 24 23 22 26 26 S 1.70952 * 110.39189 * 359.50193 * 21 20 19 27 27 H 1.08994 * 109.47174 * 299.99703 * 1 2 3 28 28 H 1.08997 * 109.47188 * 60.00617 * 1 2 3 29 29 H 1.09007 * 109.46868 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46983 * 239.99539 * 2 1 3 31 31 H 1.09006 * 109.46855 * 119.99881 * 2 1 3 32 32 H 1.09004 * 109.47606 * 59.99751 * 3 2 1 33 33 H 1.08996 * 109.47246 * 299.99589 * 3 2 1 34 34 H 0.97008 * 120.00134 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46631 * 150.00169 * 13 4 3 36 36 H 1.08998 * 109.47553 * 30.00517 * 13 4 3 37 37 H 1.09000 * 109.46553 * 60.00277 * 14 13 4 38 38 H 1.09000 * 109.46854 * 300.00318 * 14 13 4 39 39 H 0.96997 * 120.00272 * 0.02562 * 15 14 13 40 40 H 1.07998 * 122.90670 * 0.02562 * 19 18 16 41 41 H 1.08994 * 109.47108 * 209.69936 * 22 21 20 42 42 H 1.09000 * 109.47344 * 329.70612 * 22 21 20 43 43 H 1.09000 * 115.54808 * 29.33514 * 23 22 21 44 44 H 1.08995 * 117.49774 * 0.02562 * 24 23 22 45 45 H 1.09001 * 117.49382 * 145.02515 * 24 23 22 46 46 H 1.08999 * 117.50203 * 252.51124 * 25 24 23 47 47 H 1.08999 * 117.51544 * 107.48079 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3330 1.1817 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0515 1.3740 8 7 5.6019 3.1240 0.6502 9 14 6.5968 1.4962 2.6603 10 1 7.5670 0.5573 2.0418 11 1 7.3219 2.6776 3.1928 12 1 5.8838 0.8119 3.7688 13 6 4.2379 1.5597 -1.2625 14 6 4.4932 0.1642 -1.8354 15 7 5.2267 0.2814 -3.0981 16 6 5.5645 -0.8269 -3.7865 17 8 5.2598 -1.9249 -3.3595 18 6 6.2984 -0.7096 -5.0512 19 6 6.6985 0.4455 -5.6396 20 7 7.3444 0.2780 -6.7663 21 6 7.5121 -0.9366 -7.1810 22 6 8.2234 -1.3207 -8.4528 23 6 9.7132 -1.5171 -8.1644 24 6 10.6970 -0.5691 -8.8531 25 6 10.5930 -2.0262 -9.3080 26 16 6.8187 -2.0436 -6.0782 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4211 3.6259 0.7843 35 1 5.1903 2.0594 -1.0848 36 1 3.6492 2.1415 -1.9716 37 1 3.5409 -0.3354 -2.0130 38 1 5.0820 -0.4176 -1.1262 39 1 5.4699 1.1566 -3.4383 40 1 6.5053 1.4187 -5.2132 41 1 7.8025 -2.2493 -8.8382 42 1 8.0977 -0.5301 -9.1925 43 1 9.9569 -1.8499 -7.1555 44 1 10.2829 0.1947 -9.5113 45 1 11.5882 -0.2779 -8.2972 46 1 11.4157 -2.6936 -9.0513 47 1 10.1104 -2.2216 -10.2656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267316343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:17 Heat of formation + Delta-G solvation = 38.375640 kcal Electronic energy + Delta-G solvation = -25948.232231 eV Core-core repulsion = 22258.883982 eV Total energy + Delta-G solvation = -3689.348249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.20216 -39.01487 -37.76992 -36.50870 -34.33730 -32.92710 -32.20503 -30.83744 -29.39968 -27.59162 -25.58738 -24.85024 -23.54395 -22.73493 -21.87521 -21.20797 -20.90789 -20.24349 -19.49866 -18.27336 -17.34690 -16.57700 -15.87937 -15.50791 -15.35350 -15.10719 -14.78234 -14.69495 -14.34748 -14.06812 -13.81379 -13.76022 -13.53363 -13.06740 -12.83848 -12.82052 -12.63650 -11.95661 -11.87989 -11.70004 -11.59010 -11.54307 -11.21238 -10.96191 -10.81384 -10.77698 -10.48570 -10.39845 -10.39024 -10.25857 -10.08217 -9.92366 -9.72884 -9.58066 -9.55567 -9.09005 -8.63595 -8.49510 -6.66232 -5.86990 -3.45960 0.13417 1.01489 1.54526 2.37420 3.31592 3.33384 3.38287 3.41502 3.43147 3.52046 3.75469 4.35184 4.43618 4.49237 4.54345 4.74001 4.86384 5.08132 5.15164 5.21884 5.24537 5.24766 5.30160 5.44933 5.54464 5.65190 5.74011 5.74668 5.81545 5.85125 5.99279 6.07179 6.16680 6.26262 6.39016 6.49922 6.59899 6.63481 6.75193 6.94789 6.96229 7.15879 7.45078 7.48222 7.75548 7.77767 8.38225 8.44946 9.10849 9.72678 10.30407 11.13039 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.002444 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.685605 B =11451.865716 C =12726.256542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.137 3.863 14 C 0.098 3.902 15 N -0.704 5.704 16 C 0.585 3.415 17 O -0.542 6.542 18 C -0.284 4.284 19 C 0.088 3.912 20 N -0.472 5.472 21 C 0.039 3.961 22 C -0.013 4.013 23 C -0.152 4.152 24 C -0.172 4.172 25 C -0.176 4.176 26 S 0.222 5.778 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.398 0.602 40 H 0.183 0.817 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 -7.176 -19.570 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.009 3.991 14 C -0.027 4.027 15 N -0.355 5.355 16 C 0.369 3.631 17 O -0.421 6.421 18 C -0.409 4.409 19 C -0.070 4.070 20 N -0.186 5.186 21 C -0.236 4.236 22 C -0.054 4.054 23 C -0.172 4.172 24 C -0.209 4.209 25 C -0.213 4.213 26 S 0.479 5.521 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.200 0.800 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.566 -8.497 -19.491 21.747 hybrid contribution 0.687 1.059 0.965 1.589 sum 5.253 -7.438 -18.526 20.642 Atomic orbital electron populations 1.21721 0.97315 1.00416 1.01006 1.22190 0.93844 1.00925 1.01586 1.20945 0.84981 0.92986 0.98975 1.43597 0.99456 1.84752 1.02009 1.19033 1.05682 1.20449 0.93917 0.91989 1.25188 1.00824 0.94513 0.98139 1.69991 1.25619 1.14724 1.42523 0.86389 0.81632 0.77894 0.81483 1.21218 1.21682 1.20132 1.21075 1.00468 0.91015 0.86549 1.22586 0.94841 1.03156 0.82129 1.45930 1.57187 1.07873 1.24482 1.16760 0.79090 0.85225 0.82064 1.90830 1.55519 1.26122 1.69595 1.25971 1.13298 0.97308 1.04312 1.22217 0.95245 0.99008 0.90545 1.66106 1.16384 1.21965 1.14146 1.27365 1.02039 0.91996 1.02165 1.19862 0.91930 1.02710 0.90886 1.22200 0.90919 1.05848 0.98223 1.23050 1.01278 0.93139 1.03451 1.23013 1.02315 0.97494 0.98504 1.84038 1.46826 1.09221 1.11969 0.93185 0.93471 0.93805 0.92945 0.92328 0.93518 0.94716 0.93479 0.88297 0.95161 0.92629 0.91415 0.76797 0.80039 0.88981 0.88415 0.87540 0.88388 0.88702 0.88535 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.64 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.02 5.72 -4.04 -0.02 2.99 16 4 N -0.58 -13.74 2.43 -173.23 -0.42 -14.16 16 5 C -0.26 -6.89 9.45 -15.06 -0.14 -7.04 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -24.40 11.47 55.49 0.64 -23.76 16 9 Si 0.90 21.28 29.60 -169.99 -5.03 16.25 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.14 2.97 5.45 -4.04 -0.02 2.94 16 14 C 0.10 1.96 6.00 -4.04 -0.02 1.93 16 15 N -0.70 -11.83 5.54 -61.62 -0.34 -12.17 16 16 C 0.58 10.19 7.79 -12.85 -0.10 10.09 16 17 O -0.54 -11.33 16.96 5.20 0.09 -11.24 16 18 C -0.28 -4.05 6.48 -37.09 -0.24 -4.29 16 19 C 0.09 1.11 10.93 -18.85 -0.21 0.90 16 20 N -0.47 -5.89 10.51 -11.50 -0.12 -6.01 16 21 C 0.04 0.42 6.59 -13.29 -0.09 0.33 16 22 C -0.01 -0.10 6.08 -27.88 -0.17 -0.27 16 23 C -0.15 -1.12 5.72 -90.62 -0.52 -1.64 16 24 C -0.17 -1.17 10.18 -26.73 -0.27 -1.45 16 25 C -0.18 -1.01 10.25 -26.73 -0.27 -1.29 16 26 S 0.22 2.61 23.01 -107.50 -2.47 0.13 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.97 6.64 -51.93 -0.34 0.63 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.10 2.41 5.52 -51.93 -0.29 2.13 16 36 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 37 H 0.06 1.13 6.64 -51.93 -0.34 0.78 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.40 5.60 7.18 -40.82 -0.29 5.30 16 40 H 0.18 1.89 7.15 -52.49 -0.38 1.52 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.68 7.88 -51.93 -0.41 0.27 16 43 H 0.11 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.10 0.63 8.03 -51.93 -0.42 0.21 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -31.02 402.97 -11.04 -42.05 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.48 Total: 3.92 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.96 Total: -1.09 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.25 Total: -56.10 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.47 Total: 0.13 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.02 -11.04 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267316343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.429 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds