Wall clock time and date at job start Tue Mar 31 2020 19:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46837 * 2 1 4 4 N 1.46502 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99996 * 275.31189 * 4 3 2 6 6 H 1.08000 * 120.00163 * 37.57602 * 5 4 3 7 7 C 1.38816 * 119.99548 * 217.57458 * 5 4 3 8 8 N 1.31616 * 120.00083 * 21.42862 * 7 5 4 9 9 Si 1.86797 * 119.99908 * 201.42248 * 7 5 4 10 10 H 1.48508 * 109.47092 * 90.00303 * 9 7 5 11 11 H 1.48500 * 109.47616 * 210.00060 * 9 7 5 12 12 H 1.48503 * 109.47387 * 330.00837 * 9 7 5 13 13 C 1.46503 * 119.99634 * 95.30687 * 4 3 2 14 14 C 1.53006 * 109.47213 * 270.00031 * 13 4 3 15 15 N 1.46496 * 109.46750 * 180.02562 * 14 13 4 16 16 C 1.34778 * 119.99507 * 179.97438 * 15 14 13 17 17 O 1.21682 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.46685 * 119.99937 * 179.97438 * 16 15 14 19 19 C 1.35664 * 126.12950 * 0.02562 * 18 16 15 20 20 N 1.30948 * 114.18928 * 179.72598 * 19 18 16 21 21 C 1.29427 * 117.36324 * 0.51562 * 20 19 18 22 22 C 1.50701 * 124.80409 * 179.75958 * 21 20 19 23 23 C 1.53008 * 109.46620 * 89.70177 * 22 21 20 24 24 C 1.52998 * 117.49817 * 243.62243 * 23 22 21 25 25 C 1.53000 * 60.00065 * 252.51180 * 24 23 22 26 26 S 1.70952 * 110.39189 * 359.50193 * 21 20 19 27 27 H 1.08994 * 109.47174 * 299.99703 * 1 2 3 28 28 H 1.08997 * 109.47188 * 60.00617 * 1 2 3 29 29 H 1.09007 * 109.46868 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46983 * 239.99539 * 2 1 3 31 31 H 1.09006 * 109.46855 * 119.99881 * 2 1 3 32 32 H 1.09004 * 109.47606 * 59.99751 * 3 2 1 33 33 H 1.08996 * 109.47246 * 299.99589 * 3 2 1 34 34 H 0.97008 * 120.00134 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46631 * 150.00169 * 13 4 3 36 36 H 1.08998 * 109.47553 * 30.00517 * 13 4 3 37 37 H 1.09000 * 109.46553 * 60.00277 * 14 13 4 38 38 H 1.09000 * 109.46854 * 300.00318 * 14 13 4 39 39 H 0.96997 * 120.00272 * 0.02562 * 15 14 13 40 40 H 1.07998 * 122.90670 * 0.02562 * 19 18 16 41 41 H 1.08994 * 109.47108 * 209.69936 * 22 21 20 42 42 H 1.09000 * 109.47344 * 329.70612 * 22 21 20 43 43 H 1.09000 * 115.54808 * 29.33514 * 23 22 21 44 44 H 1.08995 * 117.49774 * 0.02562 * 24 23 22 45 45 H 1.09001 * 117.49382 * 145.02515 * 24 23 22 46 46 H 1.08999 * 117.50203 * 252.51124 * 25 24 23 47 47 H 1.08999 * 117.51544 * 107.48079 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3330 1.1817 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0515 1.3740 8 7 5.6019 3.1240 0.6502 9 14 6.5968 1.4962 2.6603 10 1 7.5670 0.5573 2.0418 11 1 7.3219 2.6776 3.1928 12 1 5.8838 0.8119 3.7688 13 6 4.2379 1.5597 -1.2625 14 6 4.4932 0.1642 -1.8354 15 7 5.2267 0.2814 -3.0981 16 6 5.5645 -0.8269 -3.7865 17 8 5.2598 -1.9249 -3.3595 18 6 6.2984 -0.7096 -5.0512 19 6 6.6985 0.4455 -5.6396 20 7 7.3444 0.2780 -6.7663 21 6 7.5121 -0.9366 -7.1810 22 6 8.2234 -1.3207 -8.4528 23 6 9.7132 -1.5171 -8.1644 24 6 10.6970 -0.5691 -8.8531 25 6 10.5930 -2.0262 -9.3080 26 16 6.8187 -2.0436 -6.0782 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4211 3.6259 0.7843 35 1 5.1903 2.0594 -1.0848 36 1 3.6492 2.1415 -1.9716 37 1 3.5409 -0.3354 -2.0130 38 1 5.0820 -0.4176 -1.1262 39 1 5.4699 1.1566 -3.4383 40 1 6.5053 1.4187 -5.2132 41 1 7.8025 -2.2493 -8.8382 42 1 8.0977 -0.5301 -9.1925 43 1 9.9569 -1.8499 -7.1555 44 1 10.2829 0.1947 -9.5113 45 1 11.5882 -0.2779 -8.2972 46 1 11.4157 -2.6936 -9.0513 47 1 10.1104 -2.2216 -10.2656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267316343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:16 Heat of formation + Delta-G solvation = 20.757164 kcal Electronic energy + Delta-G solvation = -25948.996225 eV Core-core repulsion = 22258.883982 eV Total energy + Delta-G solvation = -3690.112243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29770 -40.28020 -38.37073 -38.23510 -35.86013 -34.61957 -33.22560 -32.49915 -30.58251 -28.97563 -27.34776 -25.81270 -25.12288 -23.21386 -23.11931 -22.58919 -21.88073 -21.72415 -20.73479 -19.26308 -18.76571 -18.19134 -17.07306 -16.85716 -16.59708 -16.45507 -16.04494 -15.82004 -15.65758 -15.58064 -15.08715 -14.77665 -14.66840 -14.41493 -14.30823 -14.21666 -13.60559 -13.35195 -13.10159 -12.95005 -12.67814 -12.64639 -12.54869 -12.53221 -12.31921 -12.23239 -12.04325 -11.88081 -11.70273 -11.61838 -11.33022 -11.26426 -10.89494 -10.67284 -10.61736 -10.54747 -10.19762 -9.93625 -8.60852 -7.87315 -5.50161 -0.86645 0.05037 0.59329 1.32506 1.42311 1.46770 1.53080 2.05149 2.13576 2.48899 2.84836 2.97877 3.20123 3.60584 3.74699 3.82260 3.84810 4.02533 4.09442 4.16020 4.21233 4.31398 4.36390 4.48325 4.51556 4.63493 4.67374 4.70893 4.73535 4.84840 4.84946 4.96077 4.99076 5.07932 5.13047 5.21675 5.25430 5.27019 5.29563 5.30332 5.43532 5.62151 5.64113 5.71945 6.36729 6.45314 6.50662 7.02604 7.14136 7.80952 8.33128 9.08323 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.002444 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.685605 B =11451.865716 C =12726.256542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.268 4.268 6 H 0.052 0.948 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.272 1.272 13 C 0.144 3.856 14 C 0.121 3.879 15 N -0.698 5.698 16 C 0.588 3.412 17 O -0.584 6.584 18 C -0.323 4.323 19 C 0.107 3.893 20 N -0.493 5.493 21 C 0.062 3.938 22 C -0.014 4.014 23 C -0.165 4.165 24 C -0.181 4.181 25 C -0.159 4.159 26 S 0.231 5.769 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.412 0.588 40 H 0.200 0.800 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -7.519 -21.718 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.399 4.399 6 H 0.070 0.930 7 C -0.226 4.226 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.196 1.196 13 C 0.017 3.983 14 C -0.005 4.005 15 N -0.349 5.349 16 C 0.375 3.625 17 O -0.466 6.466 18 C -0.447 4.447 19 C -0.052 4.052 20 N -0.207 5.207 21 C -0.212 4.212 22 C -0.054 4.054 23 C -0.185 4.185 24 C -0.218 4.218 25 C -0.196 4.196 26 S 0.490 5.510 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.249 0.751 40 H 0.216 0.784 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.669 -8.835 -21.657 23.851 hybrid contribution 0.688 1.155 1.511 2.023 sum 5.357 -7.680 -20.146 22.216 Atomic orbital electron populations 1.21654 0.94261 1.01769 1.02004 1.22022 0.96431 0.98789 1.00280 1.21056 0.83257 0.94522 0.99153 1.43827 1.00878 1.85008 1.01897 1.19148 1.06202 1.19847 0.94669 0.93031 1.25740 1.02102 0.94737 1.00010 1.70076 1.25856 1.15460 1.43824 0.85562 0.79649 0.77260 0.79757 1.21744 1.21529 1.19635 1.20939 0.99394 0.91665 0.86322 1.22048 0.94363 1.01390 0.82732 1.45713 1.56930 1.08824 1.23445 1.17077 0.78389 0.84372 0.82709 1.90798 1.57337 1.27550 1.70915 1.25618 1.15849 0.99109 1.04144 1.22524 0.93402 0.99270 0.90043 1.66235 1.17456 1.22693 1.14340 1.28028 0.99719 0.91261 1.02207 1.20099 0.91748 1.04239 0.89350 1.22153 0.90901 1.07078 0.98384 1.23124 1.01032 0.94022 1.03653 1.23103 1.01631 0.96584 0.98308 1.83987 1.46658 1.08706 1.11615 0.92577 0.92087 0.92304 0.93605 0.94278 0.94576 0.93151 0.93691 0.90711 0.93446 0.92857 0.94825 0.75118 0.78355 0.86549 0.87323 0.88779 0.87948 0.89107 0.87984 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.14 -4.86 6.23 30.59 0.19 -4.67 16 3 C 0.15 5.92 5.72 86.38 0.49 6.42 16 4 N -0.60 -28.66 2.43 -701.98 -1.71 -30.37 16 5 C -0.27 -14.44 9.45 84.03 0.79 -13.65 16 6 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 7 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 8 N -0.91 -50.68 11.47 21.65 0.25 -50.43 16 9 Si 0.95 44.40 29.60 68.60 2.03 46.44 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.14 6.33 5.45 86.38 0.47 6.80 16 14 C 0.12 4.94 6.00 86.38 0.52 5.46 16 15 N -0.70 -23.66 5.54 -467.08 -2.59 -26.25 16 16 C 0.59 20.77 7.79 86.45 0.67 21.44 16 17 O -0.58 -25.06 16.96 -4.29 -0.07 -25.14 16 18 C -0.32 -9.07 6.48 23.88 0.15 -8.91 16 19 C 0.11 2.56 10.93 84.23 0.92 3.49 16 20 N -0.49 -11.45 10.51 -190.30 -2.00 -13.45 16 21 C 0.06 1.20 6.59 88.46 0.58 1.79 16 22 C -0.01 -0.17 6.08 29.85 0.18 0.01 16 23 C -0.17 -2.09 5.72 -10.79 -0.06 -2.15 16 24 C -0.18 -2.13 10.18 30.59 0.31 -1.81 16 25 C -0.16 -1.40 10.25 30.59 0.31 -1.09 16 26 S 0.23 5.23 23.01 -56.49 -1.30 3.93 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.05 1.69 6.64 -2.39 -0.02 1.68 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.04 1.53 8.08 -2.38 -0.02 1.51 16 33 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 34 H 0.25 13.70 8.31 -92.70 -0.77 12.92 16 35 H 0.08 3.72 5.52 -2.38 -0.01 3.71 16 36 H 0.05 1.89 7.86 -2.39 -0.02 1.87 16 37 H 0.05 2.20 6.64 -2.39 -0.02 2.18 16 38 H 0.03 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.41 11.47 7.18 -92.71 -0.67 10.80 16 40 H 0.20 3.84 7.15 -2.91 -0.02 3.82 16 41 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 1.18 7.88 -2.39 -0.02 1.16 16 43 H 0.09 1.43 8.07 -2.39 -0.02 1.42 16 44 H 0.10 1.10 8.03 -2.39 -0.02 1.08 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -67.61 402.97 1.60 -66.01 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.31 Total: 20.34 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.68 Total: 8.92 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.05 Total: -120.50 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.07 Total: -25.14 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.30 Total: 3.93 kcal Total: -67.61 1.60 -66.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267316343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.769 kcal (2) G-P(sol) polarization free energy of solvation -67.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds