Wall clock time and date at job start Tue Mar 31 2020 19:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 N 1.46493 * 109.47104 * 181.69582 * 3 2 1 5 5 C 1.34777 * 120.00087 * 84.66368 * 4 3 2 6 6 O 1.21276 * 120.00089 * 175.13306 * 5 4 3 7 7 C 1.50701 * 119.99637 * 355.13211 * 5 4 3 8 8 C 1.50698 * 109.46897 * 180.02562 * 7 5 4 9 9 C 1.33639 * 122.75185 * 124.73301 * 8 7 5 10 10 S 1.76198 * 107.92815 * 180.27054 * 9 8 7 11 11 C 1.70979 * 90.28229 * 359.97438 * 10 9 8 12 12 C 1.50701 * 124.91833 * 179.97438 * 11 10 9 13 13 N 1.29031 * 110.16446 * 0.02562 * 11 10 9 14 14 C 1.46497 * 120.00230 * 264.65923 * 4 3 2 15 15 H 1.09000 * 110.89092 * 180.31002 * 14 4 3 16 16 C 1.55155 * 111.00552 * 56.42610 * 14 4 3 17 17 C 1.54327 * 102.94262 * 277.43026 * 16 14 4 18 18 N 1.47025 * 107.27102 * 337.80399 * 17 16 14 19 19 C 1.36930 * 125.64707 * 178.89584 * 18 17 16 20 20 H 1.07997 * 119.99910 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00191 * 0.02562 * 19 18 17 22 22 N 1.31618 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47340 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46718 * 120.00074 * 23 21 19 26 26 H 1.48496 * 109.46931 * 239.99764 * 23 21 19 27 27 C 1.47427 * 108.70177 * 358.94155 * 18 17 16 28 28 H 1.08995 * 109.47483 * 59.99573 * 1 2 3 29 29 H 1.09006 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47140 * 299.99647 * 1 2 3 31 31 H 1.08994 * 109.46680 * 240.00057 * 2 1 3 32 32 H 1.09007 * 109.47327 * 120.00073 * 2 1 3 33 33 H 1.09003 * 109.46767 * 61.69590 * 3 2 1 34 34 H 1.09001 * 109.46871 * 301.70179 * 3 2 1 35 35 H 1.09005 * 109.47079 * 60.00443 * 7 5 4 36 36 H 1.08997 * 109.47281 * 300.00312 * 7 5 4 37 37 H 1.08001 * 126.03477 * 0.25008 * 9 8 7 38 38 H 1.08997 * 109.47283 * 270.00143 * 12 11 10 39 39 H 1.09004 * 109.46828 * 30.00296 * 12 11 10 40 40 H 1.09001 * 109.47061 * 149.99647 * 12 11 10 41 41 H 1.09004 * 110.71671 * 35.78925 * 16 14 4 42 42 H 1.09001 * 110.72683 * 158.89006 * 16 14 4 43 43 H 1.09000 * 109.88523 * 97.22081 * 17 16 14 44 44 H 1.09003 * 109.88286 * 218.38778 * 17 16 14 45 45 H 0.96993 * 120.00239 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.36369 * 265.29088 * 27 18 17 47 47 H 1.08998 * 110.36655 * 142.96885 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5044 1.4427 -0.0409 5 6 4.1456 1.3456 -1.2224 6 8 5.3543 1.4344 -1.2654 7 6 3.3604 1.1268 -2.4900 8 6 4.3066 1.0543 -3.6606 9 6 4.3354 0.0179 -4.5038 10 16 5.5807 0.3340 -5.7095 11 6 5.9384 1.8288 -4.9604 12 6 6.9914 2.7991 -5.4304 13 7 5.1770 2.0053 -3.9338 14 6 4.2719 1.5484 1.2025 15 1 5.3429 1.5396 1.0000 16 6 3.8839 0.4191 2.1933 17 6 2.6092 0.9717 2.8652 18 7 2.6323 2.4335 2.7094 19 6 1.6666 3.2984 3.1502 20 1 1.7767 4.3600 2.9858 21 6 0.5460 2.8105 3.8084 22 7 0.4119 1.5167 4.0092 23 14 -0.7711 3.9905 4.4103 24 1 -0.3853 5.3819 4.0633 25 1 -2.0656 3.6599 3.7620 26 1 -0.9099 3.8677 5.8837 27 6 3.8670 2.8138 1.9991 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7017 1.9474 0.9048 34 1 1.6520 1.9650 -0.8743 35 1 2.6658 1.9543 -2.6345 36 1 2.8029 0.1932 -2.4154 37 1 3.7066 -0.8588 -4.4547 38 1 7.9405 2.5676 -4.9471 39 1 7.1046 2.7168 -6.5115 40 1 6.6906 3.8146 -5.1729 41 1 3.6679 -0.5058 1.6584 42 1 4.6736 0.2626 2.9282 43 1 1.7252 0.5609 2.3775 44 1 2.6057 0.7117 3.9238 45 1 -0.3713 1.1758 4.4688 46 1 4.6479 3.0796 2.7116 47 1 3.6734 3.6439 1.3198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267548537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:46 Heat of formation + Delta-G solvation = 41.320995 kcal Electronic energy + Delta-G solvation = -28235.719898 eV Core-core repulsion = 24546.499369 eV Total energy + Delta-G solvation = -3689.220529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40916 -39.41667 -37.37886 -34.90115 -33.23463 -32.76781 -31.70079 -29.88134 -29.13368 -27.98817 -27.26220 -25.54125 -24.36576 -23.17875 -21.33955 -20.82284 -20.05819 -19.70059 -18.59795 -17.51417 -17.05939 -16.96905 -15.80499 -15.31114 -14.91958 -14.73650 -14.71695 -14.37287 -13.96285 -13.77785 -13.53665 -13.31397 -13.23566 -12.85170 -12.56084 -12.41246 -12.27677 -12.00006 -11.94998 -11.88345 -11.56210 -11.38085 -11.21939 -11.02916 -10.95800 -10.87747 -10.53989 -10.26562 -10.12515 -10.02511 -9.88756 -9.66637 -9.61809 -9.44939 -9.29015 -8.72643 -8.67031 -8.11082 -6.82473 -5.76240 -3.09955 0.64999 1.28840 1.63380 2.73298 3.01448 3.36035 3.43638 3.44719 3.50206 3.97650 4.45882 4.73254 4.89553 5.01393 5.13577 5.17984 5.28489 5.31182 5.37148 5.44125 5.49441 5.51829 5.57617 5.66110 5.69536 5.75325 5.75776 5.92426 5.96253 6.09252 6.16315 6.24720 6.30633 6.39524 6.51748 6.57655 6.65753 6.69414 6.75038 6.88005 7.22255 7.54298 7.59685 7.77297 7.80121 7.94713 8.20143 8.61163 9.17443 9.76624 10.42543 11.34328 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002954 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.779860 B = 9477.514173 C = 9790.558831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.084 3.916 4 N -0.586 5.586 5 C 0.518 3.482 6 O -0.538 6.538 7 C -0.069 4.069 8 C 0.097 3.903 9 C -0.260 4.260 10 S 0.096 5.904 11 C 0.052 3.948 12 C -0.076 4.076 13 N -0.444 5.444 14 C 0.126 3.874 15 H 0.097 0.903 16 C -0.158 4.158 17 C 0.168 3.832 18 N -0.602 5.602 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.908 3.092 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.124 3.876 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.139 0.861 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.176 0.824 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.029 0.971 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -4.426 -18.239 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.039 4.039 4 N -0.317 5.317 5 C 0.304 3.696 6 O -0.415 6.415 7 C -0.111 4.111 8 C -0.035 4.035 9 C -0.399 4.399 10 S 0.350 5.650 11 C -0.227 4.227 12 C -0.136 4.136 13 N -0.158 5.158 14 C 0.022 3.978 15 H 0.115 0.885 16 C -0.197 4.197 17 C 0.044 3.956 18 N -0.329 5.329 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.002 4.002 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.193 0.807 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.420 -4.421 -18.706 20.604 hybrid contribution -1.473 0.442 1.205 1.954 sum 5.947 -3.978 -17.501 18.908 Atomic orbital electron populations 1.21664 0.95236 1.01183 1.02439 1.22053 0.96389 0.97538 1.01680 1.22240 0.78241 0.97182 1.06197 1.47781 1.07307 1.71364 1.05294 1.20173 0.88035 0.76830 0.84513 1.90669 1.14198 1.50216 1.86418 1.20366 0.96360 1.05172 0.89193 1.19665 0.96687 0.89921 0.97271 1.26712 1.06477 1.05315 1.01350 1.83790 1.31811 1.18416 1.30970 1.27036 1.01701 0.98636 0.95320 1.20427 0.94923 0.97364 1.00909 1.66010 1.05269 1.30179 1.14327 1.22184 0.95679 0.96898 0.83089 0.88494 1.23302 1.00889 0.97543 0.97999 1.21388 0.92595 0.83251 0.98406 1.44606 1.19181 1.02741 1.66337 1.19082 0.96948 0.89075 1.30637 0.90468 1.24751 0.98448 0.96074 1.00800 1.69967 1.29172 1.10508 1.46828 0.86109 0.81750 0.79990 0.78307 1.20590 1.21764 1.21856 1.21910 0.90154 0.94605 0.93575 0.93553 0.93307 0.90966 0.93630 0.90549 0.84295 0.92354 0.87357 0.87315 0.80651 0.89576 0.90318 0.89253 0.91828 0.91616 0.91970 0.94196 0.93820 0.95302 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.14 -2.09 5.31 -26.73 -0.14 -2.23 16 3 C 0.08 1.41 4.16 -4.05 -0.02 1.40 16 4 N -0.59 -10.22 2.53 -163.68 -0.41 -10.63 16 5 C 0.52 8.97 7.59 -10.98 -0.08 8.89 16 6 O -0.54 -11.06 14.83 5.56 0.08 -10.98 16 7 C -0.07 -0.93 4.86 -29.04 -0.14 -1.07 16 8 C 0.10 1.37 5.63 -84.23 -0.47 0.90 16 9 C -0.26 -2.98 11.07 29.12 0.32 -2.66 16 10 S 0.10 0.97 23.18 -107.50 -2.49 -1.52 16 11 C 0.05 0.64 7.39 -13.45 -0.10 0.54 16 12 C -0.08 -0.65 10.46 36.01 0.38 -0.27 16 13 N -0.44 -6.84 9.68 -8.06 -0.08 -6.92 16 14 C 0.13 2.36 3.67 -65.78 -0.24 2.12 16 15 H 0.10 1.85 7.02 -51.93 -0.36 1.48 16 16 C -0.16 -2.95 5.99 -24.90 -0.15 -3.09 16 17 C 0.17 3.77 4.15 -3.06 -0.01 3.76 16 18 N -0.60 -14.26 1.91 -170.06 -0.33 -14.59 16 19 C -0.23 -5.98 9.90 -15.06 -0.15 -6.13 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -24.87 10.31 55.49 0.57 -24.30 16 23 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 C 0.12 2.59 6.54 -2.53 -0.02 2.57 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.59 6.32 -51.93 -0.33 0.26 16 32 H 0.08 1.29 4.72 -51.93 -0.25 1.05 16 33 H 0.14 2.91 4.31 -51.93 -0.22 2.68 16 34 H 0.06 0.88 6.71 -51.93 -0.35 0.53 16 35 H 0.11 1.36 7.29 -51.93 -0.38 0.99 16 36 H 0.11 1.22 6.24 -51.93 -0.32 0.89 16 37 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.11 6.77 -51.93 -0.35 0.76 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.45 4.44 -51.93 -0.23 1.22 16 44 H 0.04 1.03 7.51 -51.93 -0.39 0.64 16 45 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -31.00 374.26 -9.55 -40.55 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.96 Total: 3.89 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.55 Total: 2.72 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.24 Total: -56.44 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.00 -9.55 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267548537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.872 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds