Wall clock time and date at job start Tue Mar 31 2020 19:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 N 1.46493 * 109.47104 * 181.69582 * 3 2 1 5 5 C 1.34777 * 120.00087 * 84.66368 * 4 3 2 6 6 O 1.21276 * 120.00089 * 175.13306 * 5 4 3 7 7 C 1.50701 * 119.99637 * 355.13211 * 5 4 3 8 8 C 1.50698 * 109.46897 * 180.02562 * 7 5 4 9 9 C 1.33639 * 122.75185 * 124.73301 * 8 7 5 10 10 S 1.76198 * 107.92815 * 180.27054 * 9 8 7 11 11 C 1.70979 * 90.28229 * 359.97438 * 10 9 8 12 12 C 1.50701 * 124.91833 * 179.97438 * 11 10 9 13 13 N 1.29031 * 110.16446 * 0.02562 * 11 10 9 14 14 C 1.46497 * 120.00230 * 264.65923 * 4 3 2 15 15 H 1.09000 * 110.89092 * 180.31002 * 14 4 3 16 16 C 1.55155 * 111.00552 * 56.42610 * 14 4 3 17 17 C 1.54327 * 102.94262 * 277.43026 * 16 14 4 18 18 N 1.47025 * 107.27102 * 337.80399 * 17 16 14 19 19 C 1.36930 * 125.64707 * 178.89584 * 18 17 16 20 20 H 1.07997 * 119.99910 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00191 * 0.02562 * 19 18 17 22 22 N 1.31618 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47340 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46718 * 120.00074 * 23 21 19 26 26 H 1.48496 * 109.46931 * 239.99764 * 23 21 19 27 27 C 1.47427 * 108.70177 * 358.94155 * 18 17 16 28 28 H 1.08995 * 109.47483 * 59.99573 * 1 2 3 29 29 H 1.09006 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47140 * 299.99647 * 1 2 3 31 31 H 1.08994 * 109.46680 * 240.00057 * 2 1 3 32 32 H 1.09007 * 109.47327 * 120.00073 * 2 1 3 33 33 H 1.09003 * 109.46767 * 61.69590 * 3 2 1 34 34 H 1.09001 * 109.46871 * 301.70179 * 3 2 1 35 35 H 1.09005 * 109.47079 * 60.00443 * 7 5 4 36 36 H 1.08997 * 109.47281 * 300.00312 * 7 5 4 37 37 H 1.08001 * 126.03477 * 0.25008 * 9 8 7 38 38 H 1.08997 * 109.47283 * 270.00143 * 12 11 10 39 39 H 1.09004 * 109.46828 * 30.00296 * 12 11 10 40 40 H 1.09001 * 109.47061 * 149.99647 * 12 11 10 41 41 H 1.09004 * 110.71671 * 35.78925 * 16 14 4 42 42 H 1.09001 * 110.72683 * 158.89006 * 16 14 4 43 43 H 1.09000 * 109.88523 * 97.22081 * 17 16 14 44 44 H 1.09003 * 109.88286 * 218.38778 * 17 16 14 45 45 H 0.96993 * 120.00239 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.36369 * 265.29088 * 27 18 17 47 47 H 1.08998 * 110.36655 * 142.96885 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5044 1.4427 -0.0409 5 6 4.1456 1.3456 -1.2224 6 8 5.3543 1.4344 -1.2654 7 6 3.3604 1.1268 -2.4900 8 6 4.3066 1.0543 -3.6606 9 6 4.3354 0.0179 -4.5038 10 16 5.5807 0.3340 -5.7095 11 6 5.9384 1.8288 -4.9604 12 6 6.9914 2.7991 -5.4304 13 7 5.1770 2.0053 -3.9338 14 6 4.2719 1.5484 1.2025 15 1 5.3429 1.5396 1.0000 16 6 3.8839 0.4191 2.1933 17 6 2.6092 0.9717 2.8652 18 7 2.6323 2.4335 2.7094 19 6 1.6666 3.2984 3.1502 20 1 1.7767 4.3600 2.9858 21 6 0.5460 2.8105 3.8084 22 7 0.4119 1.5167 4.0092 23 14 -0.7711 3.9905 4.4103 24 1 -0.3853 5.3819 4.0633 25 1 -2.0656 3.6599 3.7620 26 1 -0.9099 3.8677 5.8837 27 6 3.8670 2.8138 1.9991 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7017 1.9474 0.9048 34 1 1.6520 1.9650 -0.8743 35 1 2.6658 1.9543 -2.6345 36 1 2.8029 0.1932 -2.4154 37 1 3.7066 -0.8588 -4.4547 38 1 7.9405 2.5676 -4.9471 39 1 7.1046 2.7168 -6.5115 40 1 6.6906 3.8146 -5.1729 41 1 3.6679 -0.5058 1.6584 42 1 4.6736 0.2626 2.9282 43 1 1.7252 0.5609 2.3775 44 1 2.6057 0.7117 3.9238 45 1 -0.3713 1.1758 4.4688 46 1 4.6479 3.0796 2.7116 47 1 3.6734 3.6439 1.3198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267548537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:45 Heat of formation + Delta-G solvation = 24.112622 kcal Electronic energy + Delta-G solvation = -28236.466109 eV Core-core repulsion = 24546.499369 eV Total energy + Delta-G solvation = -3689.966740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62046 -40.58794 -38.91159 -36.39570 -34.66031 -33.90195 -33.24825 -31.29363 -30.49421 -29.17950 -28.58056 -27.01557 -26.13491 -24.14891 -22.57532 -22.23283 -21.85433 -20.61342 -19.96585 -18.88286 -18.53278 -18.36775 -17.13943 -16.68077 -16.35726 -16.06722 -15.79432 -15.73551 -15.55937 -15.08526 -14.61829 -14.47752 -14.36722 -14.02274 -13.88267 -13.78558 -13.50855 -13.47111 -13.07818 -12.96952 -12.91524 -12.85489 -12.78766 -12.55478 -12.40881 -12.30364 -12.00706 -11.95793 -11.83181 -11.75886 -11.48970 -11.33381 -10.72460 -10.64371 -10.48678 -10.27600 -9.61069 -9.56841 -8.74720 -7.78788 -5.13281 -0.19619 0.49441 0.78501 1.48329 1.50725 1.58923 1.68301 1.75342 2.20755 2.52314 3.16480 3.40117 3.60866 3.70768 3.89291 3.95040 4.07376 4.09781 4.13133 4.29691 4.34669 4.38234 4.46892 4.48789 4.55854 4.66751 4.67383 4.69924 4.75139 4.82705 4.88765 4.96518 5.00041 5.02915 5.04636 5.14839 5.24612 5.36643 5.43401 5.48674 5.53663 5.73102 5.79104 5.90059 6.25065 6.58308 6.91975 7.16546 7.26379 7.80481 8.45831 9.29966 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002954 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.779860 B = 9477.514173 C = 9790.558831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.089 3.911 4 N -0.587 5.587 5 C 0.516 3.484 6 O -0.573 6.573 7 C -0.060 4.060 8 C 0.064 3.936 9 C -0.259 4.259 10 S 0.152 5.848 11 C 0.030 3.970 12 C -0.077 4.077 13 N -0.492 5.492 14 C 0.136 3.864 15 H 0.098 0.902 16 C -0.143 4.143 17 C 0.180 3.820 18 N -0.612 5.612 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.274 1.274 25 H -0.289 1.289 26 H -0.298 1.298 27 C 0.125 3.875 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.204 0.796 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.000 1.000 45 H 0.246 0.754 46 H 0.030 0.970 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -5.426 -20.833 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.033 4.033 4 N -0.318 5.318 5 C 0.305 3.695 6 O -0.452 6.452 7 C -0.102 4.102 8 C -0.068 4.068 9 C -0.398 4.398 10 S 0.406 5.594 11 C -0.248 4.248 12 C -0.137 4.137 13 N -0.207 5.207 14 C 0.031 3.969 15 H 0.115 0.885 16 C -0.182 4.182 17 C 0.056 3.944 18 N -0.338 5.338 19 C -0.368 4.368 20 H 0.092 0.908 21 C -0.243 4.243 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.225 1.225 27 C -0.001 4.001 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.221 0.779 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.019 0.981 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.432 -5.411 -21.325 23.222 hybrid contribution -1.410 0.761 1.943 2.519 sum 6.022 -4.650 -19.381 20.821 Atomic orbital electron populations 1.21590 0.94834 1.01928 1.01463 1.21960 0.96589 0.96207 1.02093 1.22120 0.77782 0.98318 1.05103 1.47824 1.07468 1.71406 1.05063 1.20833 0.87872 0.75585 0.85215 1.90649 1.15944 1.51711 1.86912 1.20372 0.96072 1.06798 0.86971 1.19789 0.97663 0.90984 0.98373 1.27120 1.06576 1.05246 1.00830 1.83549 1.30255 1.16292 1.29284 1.27576 1.01842 1.00328 0.95092 1.20566 0.94078 0.96346 1.02692 1.66010 1.06741 1.31852 1.16139 1.21966 0.95835 0.95451 0.83647 0.88452 1.23162 0.99126 0.97915 0.97993 1.21154 0.94262 0.82835 0.96169 1.44715 1.19596 1.03109 1.66428 1.19284 0.97693 0.89372 1.30416 0.90847 1.25379 1.00141 0.97389 1.01350 1.70136 1.29283 1.11682 1.47339 0.85202 0.79474 0.78670 0.77102 1.19846 1.21624 1.22519 1.21958 0.89105 0.95559 0.93510 0.91357 0.91719 0.95003 0.90513 0.92635 0.88294 0.90298 0.86579 0.84530 0.77915 0.89193 0.87457 0.89895 0.90222 0.90593 0.92938 0.98150 0.94419 0.95194 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.17 16 2 C -0.13 -3.70 5.31 30.59 0.16 -3.54 16 3 C 0.09 2.92 4.16 86.38 0.36 3.28 16 4 N -0.59 -19.95 2.53 -790.15 -2.00 -21.95 16 5 C 0.52 17.23 7.59 87.66 0.67 17.90 16 6 O -0.57 -23.27 14.83 -3.02 -0.04 -23.32 16 7 C -0.06 -1.50 4.86 29.10 0.14 -1.36 16 8 C 0.06 1.68 5.63 41.52 0.23 1.92 16 9 C -0.26 -5.14 11.07 66.78 0.74 -4.40 16 10 S 0.15 2.63 23.18 -56.49 -1.31 1.32 16 11 C 0.03 0.68 7.39 88.52 0.65 1.33 16 12 C -0.08 -1.20 10.46 71.24 0.75 -0.46 16 13 N -0.49 -14.71 9.68 -179.40 -1.74 -16.45 16 14 C 0.14 5.07 3.67 46.39 0.17 5.24 16 15 H 0.10 3.68 7.02 -2.39 -0.02 3.66 16 16 C -0.14 -5.29 5.99 31.78 0.19 -5.10 16 17 C 0.18 8.32 4.15 86.73 0.36 8.68 16 18 N -0.61 -29.75 1.91 -691.96 -1.32 -31.08 16 19 C -0.24 -12.75 9.90 84.03 0.83 -11.91 16 20 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 21 C -0.05 -2.59 5.49 84.86 0.47 -2.13 16 22 N -0.94 -52.21 10.31 21.65 0.22 -51.99 16 23 Si 0.97 44.18 29.55 68.60 2.03 46.20 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 27 C 0.12 5.28 6.54 86.86 0.57 5.85 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 1.71 6.32 -2.39 -0.02 1.70 16 32 H 0.06 1.82 4.72 -2.38 -0.01 1.81 16 33 H 0.10 4.19 4.31 -2.39 -0.01 4.18 16 34 H 0.08 2.23 6.71 -2.39 -0.02 2.22 16 35 H 0.12 2.67 7.29 -2.38 -0.02 2.65 16 36 H 0.14 2.52 6.24 -2.39 -0.01 2.51 16 37 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 2.70 6.77 -2.38 -0.02 2.69 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.05 2.53 4.44 -2.39 -0.01 2.52 16 44 H 0.00 0.01 7.51 -2.39 -0.02 0.00 16 45 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 46 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.41 374.26 3.83 -65.59 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.98 Total: 19.54 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 7.00 Total: 12.12 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -4.83 Total: -121.46 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.32 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.31 Total: 1.32 kcal Total: -69.41 3.83 -65.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267548537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.698 kcal (2) G-P(sol) polarization free energy of solvation -69.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds