Wall clock time and date at job start Tue Mar 31 2020 19:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21554 * 119.99857 * 359.97438 * 7 6 5 9 9 C 1.47855 * 120.00218 * 179.97438 * 7 6 5 10 10 C 1.39592 * 120.13007 * 359.72382 * 9 7 6 11 11 C 1.37952 * 119.90119 * 179.77093 * 10 9 7 12 12 C 1.38336 * 120.17194 * 0.50244 * 11 10 9 13 13 C 1.38548 * 120.27336 * 359.74347 * 12 11 10 14 14 F 1.35095 * 119.96004 * 180.02562 * 13 12 11 15 15 C 1.38218 * 120.08977 * 0.02562 * 13 12 11 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99636 * 179.72731 * 18 17 16 21 21 C 1.37096 * 119.99474 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00424 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99604 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47068 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47354 * 119.99560 * 25 23 21 28 28 H 1.48505 * 109.47091 * 239.99582 * 25 23 21 29 29 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 30 30 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 31 31 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.08000 * 120.05069 * 0.02562 * 10 9 7 38 38 H 1.07997 * 119.91085 * 180.22788 * 11 10 9 39 39 H 1.08004 * 119.86305 * 179.76795 * 12 11 10 40 40 H 1.07998 * 120.08592 * 180.02562 * 15 13 12 41 41 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 42 42 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 43 43 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 44 44 H 0.96996 * 120.00120 * 0.02562 * 20 18 17 45 45 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1681 2.1451 -0.2114 9 6 5.8880 4.4483 0.0676 10 6 4.9926 5.5046 0.2438 11 6 5.4659 6.7951 0.3605 12 6 6.8246 7.0462 0.2928 13 6 7.7194 6.0038 0.1130 14 9 9.0450 6.2561 0.0483 15 6 7.2576 4.7060 -0.0005 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2587 1.7275 4.8691 21 6 1.8017 2.3162 6.0199 22 1 1.0696 3.1084 5.9673 23 6 2.2812 1.8942 7.2538 24 7 3.1724 0.9305 7.3178 25 14 1.6591 2.6966 8.8218 26 1 0.6676 3.7480 8.4801 27 1 1.0167 1.6706 9.6819 28 1 2.7990 3.3097 9.5500 29 1 -0.3633 0.5933 -0.8391 30 1 -0.3633 -1.0234 -0.0944 31 1 -0.3633 0.4300 0.9333 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 3.9312 5.3113 0.2929 38 1 4.7735 7.6120 0.5005 39 1 7.1894 8.0589 0.3810 40 1 7.9552 3.8934 -0.1403 41 1 1.8236 3.0952 1.2081 42 1 3.3737 1.6315 2.3296 43 1 2.0702 0.4237 2.4306 44 1 2.9165 1.0162 4.9164 45 1 3.5069 0.6356 8.1793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267793850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:06 Heat of formation + Delta-G solvation = -92.260366 kcal Electronic energy + Delta-G solvation = -28777.857766 eV Core-core repulsion = 24516.631538 eV Total energy + Delta-G solvation = -4261.226227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.19266 -40.53043 -38.98315 -38.22898 -37.25142 -34.29187 -33.92126 -32.02502 -31.71197 -31.20494 -30.91677 -28.57875 -26.61935 -24.76748 -24.19971 -23.12644 -22.80561 -20.83736 -20.29414 -19.15697 -18.65005 -17.93314 -16.92563 -16.86332 -16.56488 -16.39925 -15.94145 -15.72802 -15.53355 -15.31129 -14.55341 -14.43336 -14.24995 -14.14875 -14.01648 -13.76630 -13.51486 -13.46675 -13.29082 -12.79564 -12.49010 -12.34005 -12.20367 -11.95551 -11.69542 -11.67927 -11.48783 -11.33237 -11.07041 -10.90765 -10.61769 -10.35814 -10.23748 -10.20315 -9.54254 -9.53236 -9.29871 -9.11991 -8.53965 -8.13164 -7.97686 -6.42871 -3.83932 0.36912 0.80402 2.51635 2.80452 3.15117 3.25890 3.32586 3.41963 3.87376 3.89208 4.05396 4.25586 4.30640 4.38085 4.55712 4.65813 4.67470 4.82365 4.92906 5.07071 5.16399 5.24157 5.29731 5.31932 5.47754 5.52445 5.60441 5.68108 5.72234 5.76525 5.80440 5.86000 5.88101 5.94934 6.05302 6.14290 6.20638 6.27989 6.42546 6.51433 7.07812 7.18284 7.48472 7.53898 7.93303 8.04593 8.59331 9.16446 9.52879 10.03748 10.74787 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.003375 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.399068 B = 8294.758462 C =10813.065696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.090 0.910 5 C 0.079 3.921 6 N -0.721 5.721 7 C 0.560 3.440 8 O -0.531 6.531 9 C -0.105 4.105 10 C -0.094 4.094 11 C -0.094 4.094 12 C -0.129 4.129 13 C 0.092 3.908 14 F -0.136 7.136 15 C -0.096 4.096 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.343 0.657 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 6.005 -17.956 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.035 4.035 4 H 0.108 0.892 5 C -0.046 4.046 6 N -0.374 5.374 7 C 0.347 3.653 8 O -0.408 6.408 9 C -0.108 4.108 10 C -0.113 4.113 11 C -0.112 4.112 12 C -0.148 4.148 13 C 0.072 3.928 14 F -0.114 7.114 15 C -0.116 4.116 16 N -0.283 5.283 17 C -0.090 4.090 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.235 0.765 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.838 5.475 -17.860 19.071 hybrid contribution 1.115 0.604 0.928 1.571 sum 4.953 6.079 -16.932 18.660 Atomic orbital electron populations 1.21621 0.94565 1.00649 1.03073 1.21506 0.97384 0.94186 1.02082 1.22006 0.90328 0.97462 0.93689 0.89226 1.22272 0.96669 0.82657 1.03010 1.45852 1.07100 1.10261 1.74186 1.18104 0.82326 0.88168 0.76673 1.90795 1.55721 1.45606 1.48703 1.19748 0.93507 0.93428 1.04105 1.21430 0.99837 0.92349 0.97688 1.21011 0.94723 0.97113 0.98375 1.21392 0.93489 0.99207 1.00739 1.17546 0.77938 0.93726 1.03564 1.91527 1.31192 1.94869 1.93851 1.21225 0.95730 0.95930 0.98672 1.60194 1.60737 1.07281 1.00114 1.21791 0.96369 1.00152 0.90669 1.19776 0.86226 0.86945 0.84402 1.90515 1.35871 1.33683 1.86749 1.41875 1.38892 1.34509 1.04673 1.19735 1.22667 1.17640 0.82863 0.87877 1.25264 0.96493 0.96656 0.99489 1.69624 1.29854 1.28139 1.26530 0.85818 0.78600 0.79011 0.81018 1.19213 1.20717 1.20778 0.93201 0.93484 0.91009 0.91750 0.91364 0.90521 0.90829 0.76474 0.84758 0.83992 0.84147 0.83346 0.83749 0.93533 0.89221 0.77521 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.73 37.16 0.36 -1.17 16 2 C -0.11 -1.15 5.31 -26.73 -0.14 -1.29 16 3 C 0.08 0.79 2.71 -67.72 -0.18 0.60 16 4 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 5 C 0.08 0.86 4.47 -4.04 -0.02 0.84 16 6 N -0.72 -7.78 5.26 -61.25 -0.32 -8.10 16 7 C 0.56 7.29 7.77 -12.33 -0.10 7.20 16 8 O -0.53 -8.68 16.35 5.32 0.09 -8.60 16 9 C -0.10 -1.18 5.87 -104.97 -0.62 -1.80 16 10 C -0.09 -0.84 9.54 -39.18 -0.37 -1.22 16 11 C -0.09 -0.73 10.03 -39.65 -0.40 -1.13 16 12 C -0.13 -1.09 10.02 -39.43 -0.40 -1.48 16 13 C 0.09 0.96 7.29 -39.47 -0.29 0.67 16 14 F -0.14 -1.51 17.26 2.25 0.04 -1.47 16 15 C -0.10 -1.10 9.57 -39.11 -0.37 -1.47 16 16 N -0.65 -8.97 5.41 -107.99 -0.58 -9.55 16 17 C 0.04 0.70 5.30 -4.97 -0.03 0.68 16 18 C 0.44 10.01 7.83 -10.98 -0.09 9.92 16 19 O -0.58 -15.11 15.85 5.55 0.09 -15.02 16 20 N -0.56 -14.06 5.29 -10.97 -0.06 -14.12 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 25 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.76 6.28 -51.93 -0.33 0.44 16 34 H 0.08 0.97 6.71 -51.93 -0.35 0.62 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.56 5.27 -40.82 -0.21 3.35 16 37 H 0.13 0.93 6.40 -52.49 -0.34 0.60 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.15 1.74 7.65 -52.49 -0.40 1.34 16 41 H 0.34 4.64 7.29 -39.29 -0.29 4.36 16 42 H 0.05 0.75 6.49 -51.93 -0.34 0.41 16 43 H 0.09 1.41 6.22 -51.93 -0.32 1.08 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -33.03 380.35 -7.97 -41.00 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -5.78 Total: 15.56 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.88 Total: 2.45 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.24 Total: -55.55 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.17 Total: -23.62 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.03 -7.97 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267793850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.258 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds