Wall clock time and date at job start Tue Mar 31 2020 19:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21353 * 120.00003 * 0.02562 * 7 6 5 9 9 C 1.49449 * 120.00045 * 179.97438 * 7 6 5 10 10 O 1.21353 * 119.99952 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00045 * 180.02562 * 9 7 6 12 12 C 1.46510 * 119.99857 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.46719 * 179.97438 * 12 11 9 14 14 C 1.38248 * 119.97604 * 269.72372 * 13 12 11 15 15 C 1.38198 * 120.02086 * 179.73117 * 14 13 12 16 16 C 1.38455 * 119.97718 * 0.56789 * 15 14 13 17 17 F 1.35109 * 120.02372 * 179.68452 * 16 15 14 18 18 C 1.38450 * 119.95046 * 359.70397 * 16 15 14 19 19 C 1.38207 * 119.97602 * 0.02562 * 18 16 15 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 31 31 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 0.97003 * 120.00281 * 0.02562 * 11 9 7 38 38 H 1.08991 * 109.46821 * 299.99781 * 12 11 9 39 39 H 1.08992 * 109.46820 * 60.00226 * 12 11 9 40 40 H 1.07994 * 119.98539 * 359.97438 * 14 13 12 41 41 H 1.08003 * 120.00776 * 180.25295 * 15 14 13 42 42 H 1.08008 * 120.01615 * 179.97438 * 18 16 15 43 43 H 1.07996 * 119.98793 * 179.97438 * 19 18 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1637 2.1479 -0.2593 9 6 5.8938 4.4632 0.0346 10 8 5.1156 5.3784 0.2066 11 7 7.2164 4.7095 -0.0468 12 6 7.7146 6.0821 0.0730 13 6 9.2164 6.0838 -0.0515 14 6 10.0032 5.9513 1.0775 15 6 11.3805 5.9472 0.9638 16 6 11.9725 6.0878 -0.2799 17 9 13.3189 6.0903 -0.3914 18 6 11.1836 6.2261 -1.4092 19 6 9.8063 6.2243 -1.2939 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.5658 5.5007 2.2897 27 1 -2.6061 3.3542 1.8525 28 1 -2.0861 4.0083 4.1289 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 7.8384 3.9780 -0.1846 38 1 7.2834 6.6953 -0.7181 39 1 7.4303 6.4883 1.0436 40 1 9.5413 5.8470 2.0481 41 1 11.9950 5.8396 1.8455 42 1 11.6442 6.3362 -2.3799 43 1 9.1907 6.3326 -2.1746 44 1 2.2720 2.1231 1.9978 45 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267822541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:43 Heat of formation + Delta-G solvation = -85.216056 kcal Electronic energy + Delta-G solvation = -27915.252459 eV Core-core repulsion = 23654.331695 eV Total energy + Delta-G solvation = -4260.920763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.32460 -40.61225 -39.62931 -38.41583 -36.91047 -35.34056 -33.88581 -32.60519 -31.63837 -31.46300 -29.68933 -28.18920 -26.80164 -24.42522 -23.55475 -23.21880 -22.28441 -21.72685 -20.41880 -20.04664 -18.61780 -18.08869 -17.44805 -16.91156 -16.82320 -16.11192 -16.01148 -15.88044 -15.48375 -15.21591 -14.97484 -14.53473 -14.31424 -14.13851 -14.01106 -13.69442 -13.63085 -13.51746 -13.22665 -12.89201 -12.74039 -12.58307 -12.08394 -12.08000 -11.70489 -11.56718 -11.49130 -11.01145 -10.80048 -10.59054 -10.38987 -10.12560 -9.92649 -9.61934 -9.60916 -9.41778 -9.21675 -9.09492 -8.97729 -8.92337 -7.10994 -6.11764 -3.13822 0.53150 0.74245 1.52579 2.42536 3.11248 3.32494 3.50928 3.55060 3.68549 3.78116 3.83267 4.14426 4.22036 4.42326 4.61595 4.65032 4.72793 4.76867 5.16641 5.22608 5.27793 5.30861 5.42974 5.50879 5.51889 5.63299 5.71142 5.75821 5.83153 5.86642 5.96164 6.00226 6.02084 6.26250 6.35937 6.37329 6.46118 6.50137 6.63637 6.89596 6.98770 7.19779 7.50995 7.78326 7.84011 8.14911 8.72012 9.15800 10.02789 10.16553 11.35351 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.002064 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.216137 B =13561.722617 C =14581.380081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.057 0.943 5 C 0.110 3.890 6 N -0.678 5.678 7 C 0.503 3.497 8 O -0.536 6.536 9 C 0.507 3.493 10 O -0.508 6.508 11 N -0.704 5.704 12 C 0.160 3.840 13 C -0.120 4.120 14 C -0.068 4.068 15 C -0.155 4.155 16 C 0.106 3.894 17 F -0.139 7.139 18 C -0.156 4.156 19 C -0.069 4.069 20 N -0.732 5.732 21 C -0.329 4.329 22 H 0.069 0.931 23 C -0.042 4.042 24 N -0.941 5.941 25 Si 1.079 2.921 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.289 1.289 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.422 0.578 37 H 0.413 0.587 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.348 3.753 -9.941 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.057 3.943 4 H 0.075 0.925 5 C -0.014 4.014 6 N -0.331 5.331 7 C 0.282 3.718 8 O -0.414 6.414 9 C 0.287 3.713 10 O -0.382 6.382 11 N -0.359 5.359 12 C 0.038 3.962 13 C -0.120 4.120 14 C -0.086 4.086 15 C -0.174 4.174 16 C 0.086 3.914 17 F -0.118 7.118 18 C -0.175 4.175 19 C -0.087 4.087 20 N -0.376 5.376 21 C -0.460 4.460 22 H 0.087 0.913 23 C -0.240 4.240 24 N -0.585 5.585 25 Si 0.910 3.090 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.215 1.215 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.261 0.739 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.201 0.799 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.145 4.624 -9.078 20.809 hybrid contribution 1.543 -0.907 -0.840 1.977 sum 19.687 3.717 -9.918 22.355 Atomic orbital electron populations 1.21762 0.95460 0.99642 1.03471 1.22055 0.97251 0.98025 0.99997 1.20521 0.89336 0.93048 0.91369 0.92488 1.21886 0.96199 0.81596 1.01712 1.45856 1.06543 1.11811 1.68858 1.19970 0.83857 0.88843 0.79088 1.90729 1.55963 1.45636 1.49121 1.20308 0.83030 0.89868 0.78046 1.90832 1.55618 1.45708 1.46002 1.45781 1.07120 1.09956 1.73000 1.20270 0.88635 0.83404 1.03938 1.19928 0.95190 1.03277 0.93644 1.21045 0.92452 0.96126 0.99008 1.21194 0.95804 1.03794 0.96608 1.17812 0.77031 1.01781 0.94757 1.91520 1.29517 1.93798 1.96928 1.21178 0.94118 1.03966 0.98224 1.21014 0.93801 0.96469 0.97440 1.42458 1.16942 1.67031 1.11150 1.20002 0.92490 1.32507 1.01013 0.91345 1.25714 1.05737 1.00257 0.92328 1.70851 1.08404 1.47319 1.31969 0.83245 0.74327 0.75837 0.75586 1.22301 1.22149 1.21511 0.94833 0.89534 0.94049 0.93715 0.92630 0.91264 0.91055 0.73888 0.75086 0.89781 0.89684 0.84428 0.84374 0.84426 0.84537 0.79891 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.15 0.34 -2.25 16 2 C -0.13 -2.23 5.61 -26.73 -0.15 -2.38 16 3 C 0.17 3.06 2.59 -67.93 -0.18 2.88 16 4 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 1.78 5.23 -4.04 -0.02 1.76 16 6 N -0.68 -11.39 5.38 -60.73 -0.33 -11.71 16 7 C 0.50 8.07 7.89 -11.59 -0.09 7.98 16 8 O -0.54 -9.12 16.48 5.49 0.09 -9.03 16 9 C 0.51 7.45 7.89 -11.59 -0.09 7.36 16 10 O -0.51 -8.92 16.48 5.49 0.09 -8.83 16 11 N -0.70 -7.69 5.54 -61.91 -0.34 -8.04 16 12 C 0.16 1.42 5.80 -5.19 -0.03 1.39 16 13 C -0.12 -0.89 5.25 -104.61 -0.55 -1.44 16 14 C -0.07 -0.48 9.70 -39.59 -0.38 -0.86 16 15 C -0.16 -1.12 10.03 -39.52 -0.40 -1.51 16 16 C 0.11 0.85 7.30 -39.42 -0.29 0.56 16 17 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 18 C -0.16 -1.08 10.03 -39.51 -0.40 -1.48 16 19 C -0.07 -0.46 9.70 -39.59 -0.38 -0.85 16 20 N -0.73 -16.62 4.50 -53.43 -0.24 -16.86 16 21 C -0.33 -8.50 7.75 -15.06 -0.12 -8.61 16 22 H 0.07 1.75 7.32 -52.48 -0.38 1.36 16 23 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 24 N -0.94 -28.14 13.70 55.49 0.76 -27.38 16 25 Si 1.08 25.31 29.92 -169.99 -5.09 20.22 16 26 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.84 5.99 -51.93 -0.31 1.53 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.42 7.79 7.61 -40.82 -0.31 7.48 16 37 H 0.41 4.13 7.94 -40.82 -0.32 3.81 16 38 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.37 8.91 6.63 -40.82 -0.27 8.64 16 45 H 0.26 7.55 6.77 -40.82 -0.28 7.28 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -31.38 387.62 -8.16 -39.54 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -6.16 Total: 16.20 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.83 Total: 1.27 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -0.15 Total: -64.00 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.18 Total: -17.86 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.22 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.38 -8.16 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267822541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.677 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds