Wall clock time and date at job start Tue Mar 31 2020 19:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21353 * 120.00003 * 0.02562 * 7 6 5 9 9 C 1.49449 * 120.00045 * 179.97438 * 7 6 5 10 10 O 1.21353 * 119.99952 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00045 * 180.02562 * 9 7 6 12 12 C 1.46510 * 119.99857 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.46719 * 179.97438 * 12 11 9 14 14 C 1.38248 * 119.97604 * 269.72372 * 13 12 11 15 15 C 1.38198 * 120.02086 * 179.73117 * 14 13 12 16 16 C 1.38455 * 119.97718 * 0.56789 * 15 14 13 17 17 F 1.35109 * 120.02372 * 179.68452 * 16 15 14 18 18 C 1.38450 * 119.95046 * 359.70397 * 16 15 14 19 19 C 1.38207 * 119.97602 * 0.02562 * 18 16 15 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 31 31 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 0.97003 * 120.00281 * 0.02562 * 11 9 7 38 38 H 1.08991 * 109.46821 * 299.99781 * 12 11 9 39 39 H 1.08992 * 109.46820 * 60.00226 * 12 11 9 40 40 H 1.07994 * 119.98539 * 359.97438 * 14 13 12 41 41 H 1.08003 * 120.00776 * 180.25295 * 15 14 13 42 42 H 1.08008 * 120.01615 * 179.97438 * 18 16 15 43 43 H 1.07996 * 119.98793 * 179.97438 * 19 18 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1637 2.1479 -0.2593 9 6 5.8938 4.4632 0.0346 10 8 5.1156 5.3784 0.2066 11 7 7.2164 4.7095 -0.0468 12 6 7.7146 6.0821 0.0730 13 6 9.2164 6.0838 -0.0515 14 6 10.0032 5.9513 1.0775 15 6 11.3805 5.9472 0.9638 16 6 11.9725 6.0878 -0.2799 17 9 13.3189 6.0903 -0.3914 18 6 11.1836 6.2261 -1.4092 19 6 9.8063 6.2243 -1.2939 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.5658 5.5007 2.2897 27 1 -2.6061 3.3542 1.8525 28 1 -2.0861 4.0083 4.1289 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 7.8384 3.9780 -0.1846 38 1 7.2834 6.6953 -0.7181 39 1 7.4303 6.4883 1.0436 40 1 9.5413 5.8470 2.0481 41 1 11.9950 5.8396 1.8455 42 1 11.6442 6.3362 -2.3799 43 1 9.1907 6.3326 -2.1746 44 1 2.2720 2.1231 1.9978 45 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267822541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:42 Heat of formation + Delta-G solvation = -106.607630 kcal Electronic energy + Delta-G solvation = -27916.180067 eV Core-core repulsion = 23654.331695 eV Total energy + Delta-G solvation = -4261.848371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.96075 -41.77814 -40.36222 -39.58457 -38.44057 -36.36832 -35.36840 -34.30484 -32.21508 -32.17005 -31.36331 -29.71413 -27.72624 -25.83468 -24.93105 -24.09131 -23.49944 -22.46847 -21.82088 -21.29559 -19.84160 -19.36193 -18.69583 -18.00854 -17.57263 -17.12092 -17.03964 -16.77907 -16.61310 -16.47272 -16.28446 -15.70041 -15.53789 -15.37622 -15.03282 -14.72576 -14.69666 -14.61339 -14.48167 -14.20434 -13.67631 -13.46705 -13.35781 -13.22091 -12.87338 -12.70602 -12.69767 -12.60254 -12.08767 -12.02109 -11.96606 -11.82951 -11.53060 -11.18745 -10.94090 -10.78369 -10.41627 -10.26692 -10.12764 -9.73839 -9.06565 -8.26402 -5.21540 -0.07450 0.21374 0.29763 1.33959 1.61473 1.70926 1.83582 2.09522 2.42449 2.74816 2.79213 3.21283 3.41924 3.50033 3.50928 3.68970 3.73092 3.80983 3.92103 4.12438 4.25198 4.26879 4.39997 4.49261 4.55964 4.58199 4.60919 4.77423 4.91397 4.92933 5.00674 5.02448 5.04834 5.09921 5.13558 5.16755 5.25374 5.43376 5.47770 5.66936 5.74212 5.81762 5.88573 6.28856 6.59069 6.65378 6.88890 7.15860 8.05739 8.17336 9.24357 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.002064 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.216137 B =13561.722617 C =14581.380081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.166 3.834 4 H 0.056 0.944 5 C 0.118 3.882 6 N -0.684 5.684 7 C 0.504 3.496 8 O -0.545 6.545 9 C 0.509 3.491 10 O -0.542 6.542 11 N -0.683 5.683 12 C 0.160 3.840 13 C -0.122 4.122 14 C -0.071 4.071 15 C -0.159 4.159 16 C 0.089 3.911 17 F -0.148 7.148 18 C -0.157 4.157 19 C -0.067 4.067 20 N -0.740 5.740 21 C -0.303 4.303 22 H 0.072 0.928 23 C -0.107 4.107 24 N -0.981 5.981 25 Si 1.120 2.880 26 H -0.291 1.291 27 H -0.272 1.272 28 H -0.301 1.301 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.414 0.586 37 H 0.419 0.581 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.358 0.642 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.847 3.271 -11.789 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.006 4.006 6 N -0.335 5.335 7 C 0.284 3.716 8 O -0.424 6.424 9 C 0.289 3.711 10 O -0.419 6.419 11 N -0.337 5.337 12 C 0.038 3.962 13 C -0.123 4.123 14 C -0.089 4.089 15 C -0.178 4.178 16 C 0.070 3.930 17 F -0.127 7.127 18 C -0.176 4.176 19 C -0.086 4.086 20 N -0.383 5.383 21 C -0.435 4.435 22 H 0.090 0.910 23 C -0.298 4.298 24 N -0.630 5.630 25 Si 0.947 3.053 26 H -0.218 1.218 27 H -0.197 1.197 28 H -0.228 1.228 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.251 0.749 37 H 0.257 0.743 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.190 0.810 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 18.693 4.100 -10.992 22.069 hybrid contribution 1.488 -0.822 -0.373 1.740 sum 20.180 3.278 -11.365 23.392 Atomic orbital electron populations 1.21692 0.96056 1.00594 1.01726 1.21965 0.96612 0.96823 1.01359 1.20710 0.90858 0.93559 0.89111 0.92557 1.21834 0.94461 0.81477 1.02815 1.45896 1.06818 1.11687 1.69110 1.20189 0.83460 0.89449 0.78498 1.90719 1.55997 1.46094 1.49602 1.20091 0.83954 0.88822 0.78195 1.90823 1.56634 1.46227 1.48223 1.45777 1.05841 1.11259 1.70785 1.20386 0.89630 0.82019 1.04133 1.19830 0.94149 1.04101 0.94235 1.21189 0.92470 0.95845 0.99442 1.21358 0.96000 1.03478 0.96932 1.18074 0.76823 1.02541 0.95544 1.91497 1.30192 1.93965 1.97003 1.21382 0.94161 1.03341 0.98690 1.21202 0.93914 0.95713 0.97726 1.42593 1.15866 1.67350 1.12448 1.20246 0.93173 1.29810 1.00255 0.90977 1.26865 1.08209 1.02012 0.92754 1.70959 1.08612 1.50051 1.33333 0.82691 0.71786 0.75626 0.75182 1.21786 1.19740 1.22773 0.92667 0.93483 0.93370 0.90106 0.93400 0.91702 0.88617 0.74865 0.74317 0.89126 0.89863 0.83487 0.83183 0.82859 0.82885 0.81011 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.18 71.98 0.66 -4.15 16 2 C -0.13 -3.99 5.61 30.59 0.17 -3.82 16 3 C 0.17 5.83 2.59 44.99 0.12 5.95 16 4 H 0.06 2.01 8.08 -2.38 -0.02 1.99 16 5 C 0.12 3.63 5.23 86.38 0.45 4.09 16 6 N -0.68 -22.58 5.38 -464.41 -2.50 -25.08 16 7 C 0.50 15.76 7.89 87.27 0.69 16.45 16 8 O -0.55 -17.79 16.48 -3.26 -0.05 -17.84 16 9 C 0.51 14.68 7.89 87.27 0.69 15.37 16 10 O -0.54 -19.07 16.48 -3.26 -0.05 -19.12 16 11 N -0.68 -14.10 5.54 -468.14 -2.59 -16.70 16 12 C 0.16 2.63 5.80 85.63 0.50 3.13 16 13 C -0.12 -1.62 5.25 -19.86 -0.10 -1.73 16 14 C -0.07 -0.91 9.70 22.26 0.22 -0.69 16 15 C -0.16 -2.10 10.03 22.31 0.22 -1.88 16 16 C 0.09 1.33 7.30 22.37 0.16 1.50 16 17 F -0.15 -2.55 17.27 44.97 0.78 -1.77 16 18 C -0.16 -1.92 10.03 22.31 0.22 -1.69 16 19 C -0.07 -0.77 9.70 22.26 0.22 -0.56 16 20 N -0.74 -33.67 4.50 -322.94 -1.45 -35.13 16 21 C -0.30 -15.65 7.75 84.03 0.65 -14.99 16 22 H 0.07 3.63 7.32 -2.91 -0.02 3.60 16 23 C -0.11 -6.00 5.50 84.86 0.47 -5.53 16 24 N -0.98 -60.22 13.70 21.65 0.30 -59.92 16 25 Si 1.12 51.43 29.92 68.60 2.05 53.48 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.95 5.99 -2.38 -0.01 1.93 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.41 15.35 7.61 -92.71 -0.71 14.64 16 37 H 0.42 7.73 7.94 -92.71 -0.74 6.99 16 38 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 44 H 0.36 17.72 6.63 -92.71 -0.61 17.10 16 45 H 0.24 14.90 6.77 -92.71 -0.63 14.27 16 Total: -1.00 -67.92 387.62 0.93 -66.99 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.87 Total: 43.65 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.33 Total: 11.44 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -6.25 Total: -136.82 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.11 Total: -36.96 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -67.92 0.93 -66.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267822541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.618 kcal (2) G-P(sol) polarization free energy of solvation -67.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds