Wall clock time and date at job start Tue Mar 31 2020 19:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 H 1.08999 * 109.47588 * 305.00403 * 3 2 1 5 5 C 1.53001 * 109.47318 * 185.00192 * 3 2 1 6 6 N 1.46499 * 109.47634 * 185.00369 * 5 3 2 7 7 C 1.34772 * 120.00211 * 180.02562 * 6 5 3 8 8 O 1.21611 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.47399 * 119.99992 * 180.02562 * 7 6 5 10 10 C 1.39756 * 120.17363 * 5.31593 * 9 7 6 11 11 C 1.37687 * 119.94842 * 179.97438 * 10 9 7 12 12 C 1.38859 * 120.30094 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.82472 * 180.02562 * 12 11 10 14 14 C 1.38316 * 120.35007 * 359.74359 * 12 11 10 15 15 C 1.38722 * 120.04575 * 0.51008 * 14 12 11 16 16 N 1.39294 * 120.14991 * 179.77126 * 15 14 12 17 17 C 1.34775 * 120.00252 * 25.22259 * 16 15 14 18 18 C 1.50698 * 120.00033 * 185.59742 * 17 16 15 19 19 O 1.21277 * 120.00162 * 5.59399 * 17 16 15 20 20 N 1.46501 * 109.47177 * 65.00584 * 3 2 1 21 21 C 1.36935 * 119.99865 * 274.99841 * 20 3 2 22 22 H 1.07998 * 120.00222 * 359.97438 * 21 20 3 23 23 C 1.38812 * 120.00078 * 179.97438 * 21 20 3 24 24 N 1.31616 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00194 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46945 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47304 * 120.00323 * 25 23 21 28 28 H 1.48504 * 109.47347 * 240.00689 * 25 23 21 29 29 H 1.08996 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46845 * 299.99749 * 1 2 3 31 31 H 1.09000 * 109.47598 * 59.99595 * 1 2 3 32 32 H 1.09006 * 109.46597 * 240.00539 * 2 1 3 33 33 H 1.08997 * 109.47257 * 120.00046 * 2 1 3 34 34 H 1.09000 * 109.47042 * 64.99599 * 5 3 2 35 35 H 1.09000 * 109.46938 * 305.00497 * 5 3 2 36 36 H 0.96996 * 119.99425 * 359.97438 * 6 5 3 37 37 H 1.07995 * 120.02595 * 0.02562 * 10 9 7 38 38 H 1.07997 * 119.84964 * 180.02562 * 11 10 9 39 39 H 1.08005 * 119.97458 * 180.28453 * 14 12 11 40 40 H 0.97006 * 120.00081 * 204.94927 * 16 15 14 41 41 H 1.08994 * 109.47299 * 60.00270 * 18 17 16 42 42 H 1.09008 * 109.46897 * 180.02562 * 18 17 16 43 43 H 1.09004 * 109.47397 * 299.99389 * 18 17 16 44 44 H 0.96998 * 119.99936 * 94.99620 * 20 3 2 45 45 H 0.97002 * 120.00192 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1258 6 7 4.0631 2.8168 -0.0059 7 6 5.3856 3.0631 -0.0868 8 8 6.1655 2.1459 -0.2589 9 6 5.8869 4.4439 0.0343 10 6 5.0081 5.4857 0.3433 11 6 5.4815 6.7737 0.4559 12 6 6.8300 7.0438 0.2642 13 9 7.2842 8.3111 0.3775 14 6 7.7117 6.0213 -0.0363 15 6 7.2495 4.7191 -0.1584 16 7 8.1348 3.6885 -0.4657 17 6 9.4413 3.8079 -0.1573 18 6 10.4199 2.7513 -0.6011 19 8 9.8295 4.7657 0.4773 20 7 1.6525 2.0974 1.2519 21 6 0.4157 2.6734 1.3690 22 1 -0.2739 2.6452 0.5383 23 6 0.0483 3.2935 2.5553 24 7 0.8890 3.3283 3.5674 25 14 -1.6386 4.0799 2.7148 26 1 -2.3880 3.9058 1.4445 27 1 -2.3848 3.4304 3.8222 28 1 -1.4843 5.5282 3.0044 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0377 -1.0961 35 1 3.9954 0.8311 0.6658 36 1 3.4410 3.5483 0.1309 37 1 3.9587 5.2805 0.4945 38 1 4.8010 7.5775 0.6952 39 1 8.7601 6.2376 -0.1797 40 1 7.8102 2.8831 -0.8981 41 1 10.4114 2.6821 -1.6888 42 1 11.4209 3.0175 -0.2614 43 1 10.1354 1.7899 -0.1735 44 1 2.2721 2.1230 1.9978 45 1 0.6324 3.7620 4.3963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269413168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:39 Heat of formation + Delta-G solvation = -99.945793 kcal Electronic energy + Delta-G solvation = -29186.401942 eV Core-core repulsion = 24924.842450 eV Total energy + Delta-G solvation = -4261.559492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.09137 -42.08740 -40.63484 -39.10808 -38.18772 -36.11771 -35.11484 -34.14237 -32.27400 -31.92854 -31.42195 -29.82685 -29.15046 -25.80455 -24.93327 -24.48540 -23.48075 -22.03272 -21.48793 -21.29488 -19.54088 -19.23623 -18.63110 -18.33548 -17.44125 -17.08891 -16.95247 -16.77480 -16.53696 -16.34479 -16.14763 -15.87201 -15.64819 -15.14909 -14.87876 -14.61934 -14.50662 -14.33187 -14.19786 -14.03141 -13.84172 -13.55812 -13.41896 -13.08203 -12.95926 -12.79416 -12.75398 -12.68355 -12.32633 -12.04890 -11.83763 -11.72694 -11.58745 -11.30588 -11.17433 -10.93308 -10.82174 -10.20088 -9.92504 -9.32794 -8.94404 -7.84982 -5.11614 -0.50742 0.01109 1.42024 1.50872 1.54541 1.61053 1.65167 1.97792 2.15774 2.60207 2.62244 3.03339 3.49172 3.50892 3.64478 3.75615 3.91571 3.94370 3.99336 4.06271 4.26076 4.42504 4.47681 4.52158 4.60291 4.61357 4.68480 4.75285 4.81865 4.91687 5.00051 5.01036 5.05702 5.13646 5.15787 5.22155 5.25125 5.45706 5.59844 5.65814 5.70062 5.75840 6.30552 6.35383 6.51665 6.92227 7.13560 7.43933 8.15820 8.39924 9.37713 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.003243 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.265765 B = 8631.010850 C =10477.781539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.163 3.837 4 H 0.061 0.939 5 C 0.122 3.878 6 N -0.699 5.699 7 C 0.565 3.435 8 O -0.573 6.573 9 C -0.193 4.193 10 C -0.024 4.024 11 C -0.176 4.176 12 C 0.144 3.856 13 F -0.134 7.134 14 C -0.195 4.195 15 C 0.229 3.771 16 N -0.654 5.654 17 C 0.502 3.498 18 C -0.163 4.163 19 O -0.567 6.567 20 N -0.728 5.728 21 C -0.212 4.212 22 H 0.081 0.919 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.953 3.047 26 H -0.266 1.266 27 H -0.306 1.306 28 H -0.299 1.299 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.411 0.589 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.433 0.567 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.842 -0.523 -13.294 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.079 0.921 5 C -0.002 4.002 6 N -0.349 5.349 7 C 0.354 3.646 8 O -0.456 6.456 9 C -0.199 4.199 10 C -0.043 4.043 11 C -0.196 4.196 12 C 0.124 3.876 13 F -0.113 7.113 14 C -0.217 4.217 15 C 0.130 3.870 16 N -0.304 5.304 17 C 0.294 3.706 18 C -0.222 4.222 19 O -0.446 6.446 20 N -0.369 5.369 21 C -0.344 4.344 22 H 0.099 0.901 23 C -0.262 4.262 24 N -0.617 5.617 25 Si 0.785 3.215 26 H -0.190 1.190 27 H -0.234 1.234 28 H -0.227 1.227 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.249 0.751 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.279 0.721 41 H 0.137 0.863 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.521 -0.524 -13.100 18.833 hybrid contribution -1.241 0.775 1.005 1.775 sum 12.280 0.251 -12.095 17.238 Atomic orbital electron populations 1.21706 0.96168 1.00505 1.01781 1.21987 0.96476 0.97414 1.01116 1.20748 0.91034 0.93277 0.89523 0.92060 1.21661 0.94274 0.82176 1.02099 1.45838 1.06659 1.11173 1.71222 1.18025 0.82646 0.87710 0.76238 1.90489 1.55889 1.46298 1.52943 1.19733 0.93293 0.94287 1.12625 1.21244 1.00152 0.90773 0.92136 1.21249 0.93783 0.98872 1.05662 1.17784 0.92645 0.78728 0.98479 1.91510 1.89755 1.36931 1.93088 1.21206 1.01980 0.90529 1.07945 1.17476 0.88318 0.87979 0.93253 1.44176 1.07521 1.20174 1.58565 1.22061 0.82856 0.88189 0.77476 1.21977 0.97661 0.97191 1.05387 1.90677 1.79034 1.34931 1.39953 1.42608 1.15778 1.66063 1.12445 1.19512 0.92516 1.25035 0.97361 0.90132 1.25300 1.00574 1.03590 0.96732 1.69798 1.36613 1.51020 1.04295 0.85359 0.81340 0.77480 0.77312 1.19031 1.23415 1.22651 0.93039 0.93362 0.93153 0.90460 0.93662 0.89252 0.92673 0.75093 0.82778 0.81749 0.82845 0.72079 0.86271 0.87858 0.87300 0.79545 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.18 71.98 0.66 -3.85 16 2 C -0.13 -3.81 5.61 30.59 0.17 -3.63 16 3 C 0.16 5.18 2.59 44.99 0.12 5.29 16 4 H 0.06 1.91 8.08 -2.39 -0.02 1.90 16 5 C 0.12 3.46 5.23 86.38 0.45 3.91 16 6 N -0.70 -20.06 5.34 -466.40 -2.49 -22.55 16 7 C 0.56 16.54 7.74 86.66 0.67 17.21 16 8 O -0.57 -17.79 13.81 -4.07 -0.06 -17.85 16 9 C -0.19 -5.31 5.89 -19.99 -0.12 -5.43 16 10 C -0.02 -0.59 9.52 22.51 0.21 -0.38 16 11 C -0.18 -4.14 10.00 22.29 0.22 -3.92 16 12 C 0.14 3.75 7.30 22.44 0.16 3.91 16 13 F -0.13 -3.52 17.26 44.97 0.78 -2.74 16 14 C -0.20 -5.43 8.67 22.40 0.19 -5.23 16 15 C 0.23 6.33 6.43 38.58 0.25 6.58 16 16 N -0.65 -15.85 4.85 -302.99 -1.47 -17.32 16 17 C 0.50 11.61 7.73 87.66 0.68 12.29 16 18 C -0.16 -2.00 10.32 71.24 0.74 -1.26 16 19 O -0.57 -17.37 14.26 -3.02 -0.04 -17.41 16 20 N -0.73 -30.54 4.51 -322.94 -1.46 -31.99 16 21 C -0.21 -10.04 7.75 84.03 0.65 -9.39 16 22 H 0.08 3.67 7.32 -2.91 -0.02 3.65 16 23 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 24 N -0.97 -54.61 13.06 21.65 0.28 -54.33 16 25 Si 0.95 42.93 29.55 68.60 2.03 44.95 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.87 5.99 -2.39 -0.01 1.85 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.41 11.99 6.19 -92.71 -0.57 11.42 16 37 H 0.15 3.63 6.44 -2.91 -0.02 3.61 16 38 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 39 H 0.15 4.49 5.81 -2.91 -0.02 4.48 16 40 H 0.43 9.72 6.01 -92.70 -0.56 9.17 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 1.16 8.12 -2.38 -0.02 1.14 16 43 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.37 17.64 7.80 -92.71 -0.72 16.92 16 45 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -63.55 376.69 2.31 -61.24 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.79 Total: 45.04 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.53 Total: 12.96 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -5.13 Total: -126.19 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.10 Total: -35.26 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -63.55 2.31 -61.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269413168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.703 kcal (2) G-P(sol) polarization free energy of solvation -63.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds