Wall clock time and date at job start Tue Mar 31 2020 19:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47441 * 2 1 4 4 H 1.08996 * 109.47131 * 54.99471 * 3 2 1 5 5 C 1.53004 * 109.47119 * 174.99742 * 3 2 1 6 6 N 1.46499 * 109.46752 * 174.99754 * 5 3 2 7 7 C 1.34775 * 119.99888 * 180.02562 * 6 5 3 8 8 O 1.21611 * 119.99953 * 359.97438 * 7 6 5 9 9 C 1.47404 * 120.00173 * 180.02562 * 7 6 5 10 10 C 1.39752 * 120.17328 * 5.31939 * 9 7 6 11 11 C 1.37685 * 119.94973 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.29964 * 359.97438 * 11 10 9 13 13 F 1.35097 * 119.82336 * 180.02562 * 12 11 10 14 14 C 1.38312 * 120.35015 * 359.76788 * 12 11 10 15 15 C 1.38726 * 120.04682 * 0.51012 * 14 12 11 16 16 N 1.39292 * 120.14970 * 179.74221 * 15 14 12 17 17 C 1.34779 * 119.99902 * 25.22604 * 16 15 14 18 18 C 1.50706 * 119.99598 * 185.59072 * 17 16 15 19 19 O 1.21268 * 120.00196 * 5.58857 * 17 16 15 20 20 N 1.46501 * 109.46718 * 294.99567 * 3 2 1 21 21 C 1.36935 * 119.99779 * 85.00170 * 20 3 2 22 22 H 1.07995 * 120.00517 * 0.02562 * 21 20 3 23 23 C 1.38812 * 119.99841 * 179.97438 * 21 20 3 24 24 N 1.31617 * 120.00388 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99972 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47164 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46853 * 120.00250 * 25 23 21 28 28 H 1.48502 * 109.47491 * 240.00182 * 25 23 21 29 29 H 1.09010 * 109.46737 * 59.99973 * 1 2 3 30 30 H 1.08994 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47243 * 300.00531 * 1 2 3 32 32 H 1.09004 * 109.47055 * 239.99647 * 2 1 3 33 33 H 1.09007 * 109.47154 * 119.99723 * 2 1 3 34 34 H 1.08996 * 109.47074 * 55.00302 * 5 3 2 35 35 H 1.08998 * 109.46818 * 294.99819 * 5 3 2 36 36 H 0.96998 * 120.00592 * 359.97438 * 6 5 3 37 37 H 1.08003 * 120.02466 * 359.97438 * 10 9 7 38 38 H 1.07992 * 119.84908 * 179.97438 * 11 10 9 39 39 H 1.08005 * 119.97725 * 180.25626 * 14 12 11 40 40 H 0.97001 * 119.99857 * 204.94270 * 16 15 14 41 41 H 1.09004 * 109.46769 * 60.00299 * 18 17 16 42 42 H 1.08999 * 109.46869 * 179.97438 * 18 17 16 43 43 H 1.08988 * 109.47303 * 299.99983 * 18 17 16 44 44 H 0.96998 * 120.00302 * 264.99751 * 20 3 2 45 45 H 0.96999 * 120.00747 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5649 1.4442 0.1258 6 7 4.0631 2.8167 0.0060 7 6 5.3858 3.0628 0.0858 8 8 6.1656 2.1456 0.2579 9 6 5.8871 4.4438 -0.0342 10 6 4.9899 5.5118 -0.1194 11 6 5.4632 6.8000 -0.2308 12 6 6.8299 7.0442 -0.2585 13 9 7.2837 8.3120 -0.3676 14 6 7.7289 5.9970 -0.1697 15 6 7.2679 4.6929 -0.0628 16 7 8.1715 3.6361 0.0214 17 6 9.4132 3.8478 0.5009 18 6 10.4304 2.7360 0.4752 19 8 9.7119 4.9326 0.9530 20 7 1.6526 2.0974 -1.2519 21 6 0.4158 2.6734 -1.3689 22 1 -0.2738 2.6453 -0.5383 23 6 0.0488 3.2944 -2.5549 24 7 0.8894 3.3291 -3.5671 25 14 -1.6386 4.0796 -2.7149 26 1 -2.3884 3.9047 -1.4450 27 1 -1.4851 5.5283 -3.0031 28 1 -2.3836 3.4305 -3.8235 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.9955 0.8311 -0.6658 35 1 3.8498 1.0376 1.0961 36 1 3.4412 3.5482 -0.1316 37 1 3.9260 5.3270 -0.0978 38 1 4.7684 7.6241 -0.2969 39 1 8.7907 6.1942 -0.1877 40 1 7.9057 2.7471 -0.2613 41 1 10.5962 2.4191 -0.5545 42 1 11.3685 3.0921 0.9009 43 1 10.0623 1.8932 1.0601 44 1 2.2721 2.1230 -1.9978 45 1 0.6331 3.7634 -4.3958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269413169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:42 Heat of formation + Delta-G solvation = -81.372584 kcal Electronic energy + Delta-G solvation = -29177.452484 eV Core-core repulsion = 24916.698387 eV Total energy + Delta-G solvation = -4260.754098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.02808 -41.04701 -39.52625 -38.00538 -36.78283 -35.03697 -33.78365 -32.48676 -31.27338 -30.95319 -29.79097 -28.92436 -27.80335 -24.32126 -23.68909 -23.21640 -22.27265 -20.95167 -20.33846 -19.99929 -18.43139 -17.82767 -17.37891 -17.11764 -16.36949 -16.05631 -15.73417 -15.51033 -15.43743 -15.28147 -14.84521 -14.62310 -14.07905 -13.91776 -13.68669 -13.39349 -13.27259 -13.12517 -12.96690 -12.94802 -12.76272 -12.65595 -12.31840 -12.17432 -11.69496 -11.52903 -11.04562 -10.95958 -10.82030 -10.70266 -10.51237 -10.26664 -10.12391 -10.06663 -9.76190 -9.61551 -9.06278 -9.03347 -8.78878 -8.28878 -7.12236 -5.89245 -3.19085 0.57107 1.04139 2.34707 2.75364 2.91955 3.32833 3.35452 3.41277 3.43312 3.68577 4.06900 4.46411 4.47562 4.63267 4.77921 4.88902 4.96834 5.08444 5.14161 5.28334 5.29305 5.36040 5.47149 5.55751 5.74856 5.80388 5.82321 5.87636 5.88463 6.00289 6.02744 6.06718 6.20339 6.33998 6.43156 6.48909 6.52828 6.70295 6.75437 6.93425 7.17644 7.25781 7.60098 7.71583 7.85839 8.27474 8.31710 9.40118 9.93837 10.29707 11.32340 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.003229 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.957137 B = 8669.335518 C =10524.009007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.699 5.699 7 C 0.565 3.435 8 O -0.562 6.562 9 C -0.183 4.183 10 C -0.026 4.026 11 C -0.181 4.181 12 C 0.147 3.853 13 F -0.133 7.133 14 C -0.187 4.187 15 C 0.239 3.761 16 N -0.655 5.655 17 C 0.510 3.490 18 C -0.172 4.172 19 O -0.529 6.529 20 N -0.722 5.722 21 C -0.240 4.240 22 H 0.074 0.926 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.412 0.588 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.161 0.839 40 H 0.430 0.570 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.187 -0.132 7.578 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.349 5.349 7 C 0.353 3.647 8 O -0.444 6.444 9 C -0.189 4.189 10 C -0.045 4.045 11 C -0.201 4.201 12 C 0.126 3.874 13 F -0.112 7.112 14 C -0.209 4.209 15 C 0.140 3.860 16 N -0.306 5.306 17 C 0.299 3.701 18 C -0.232 4.232 19 O -0.406 6.406 20 N -0.365 5.365 21 C -0.371 4.371 22 H 0.092 0.908 23 C -0.206 4.206 24 N -0.575 5.575 25 Si 0.733 3.267 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.250 0.750 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.276 0.724 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.815 -0.016 8.020 15.975 hybrid contribution -1.266 0.556 -0.735 1.566 sum 12.550 0.541 7.286 14.521 Atomic orbital electron populations 1.21769 0.95672 0.99687 1.03282 1.22065 0.97032 0.98285 1.00037 1.20580 0.89755 0.92971 0.91527 0.92755 1.21750 0.95845 0.82098 1.01363 1.45871 1.06675 1.11276 1.71123 1.17904 0.82835 0.87430 0.76498 1.90501 1.55688 1.45972 1.52259 1.19748 0.92048 0.94417 1.12730 1.21105 0.99962 0.90687 0.92771 1.21047 0.93615 0.98530 1.06893 1.17679 0.92203 0.78875 0.98624 1.91515 1.89800 1.36899 1.92955 1.21220 1.02071 0.90278 1.07291 1.17328 0.87651 0.87700 0.93368 1.44091 1.11736 1.13137 1.61641 1.21138 0.82650 0.90204 0.76124 1.21919 0.98355 0.97791 1.05096 1.90686 1.79214 1.26527 1.44161 1.42473 1.16846 1.65885 1.11247 1.19237 0.91969 1.27806 0.98057 0.90817 1.24729 0.98010 1.01479 0.96349 1.69660 1.35127 1.48758 1.03993 0.86214 0.84118 0.78909 0.77502 1.20532 1.21870 1.21918 0.89648 0.94845 0.94096 0.92497 0.93835 0.91475 0.91533 0.75009 0.83556 0.83856 0.82121 0.72401 0.88836 0.88534 0.88708 0.78087 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.18 37.16 0.34 -2.13 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.16 2.75 2.59 -67.93 -0.18 2.57 16 4 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 5 C 0.11 1.73 5.23 -4.04 -0.02 1.71 16 6 N -0.70 -10.49 5.34 -61.39 -0.33 -10.82 16 7 C 0.57 8.56 7.74 -12.53 -0.10 8.46 16 8 O -0.56 -9.07 13.81 5.27 0.07 -8.99 16 9 C -0.18 -2.57 5.89 -104.81 -0.62 -3.19 16 10 C -0.03 -0.33 9.52 -39.22 -0.37 -0.70 16 11 C -0.18 -2.20 10.00 -39.55 -0.40 -2.60 16 12 C 0.15 1.94 7.30 -39.32 -0.29 1.65 16 13 F -0.13 -1.78 17.26 2.25 0.04 -1.74 16 14 C -0.19 -2.60 8.67 -39.37 -0.34 -2.95 16 15 C 0.24 3.34 6.43 -83.50 -0.54 2.81 16 16 N -0.66 -8.22 4.85 -9.70 -0.05 -8.26 16 17 C 0.51 6.00 7.73 -10.98 -0.08 5.91 16 18 C -0.17 -1.23 10.32 36.01 0.37 -0.85 16 19 O -0.53 -7.89 14.26 5.57 0.08 -7.81 16 20 N -0.72 -15.34 4.51 -53.42 -0.24 -15.58 16 21 C -0.24 -5.76 7.75 -15.06 -0.12 -5.87 16 22 H 0.07 1.74 7.32 -52.49 -0.38 1.36 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -25.61 13.06 55.49 0.72 -24.88 16 25 Si 0.90 20.73 29.55 -169.99 -5.02 15.70 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.08 1.71 5.99 -51.92 -0.31 1.40 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.41 6.24 6.19 -40.82 -0.25 5.99 16 37 H 0.15 1.71 6.44 -52.48 -0.34 1.37 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.16 2.31 5.81 -52.48 -0.30 2.00 16 40 H 0.43 5.22 6.01 -40.82 -0.25 4.98 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.09 0.57 8.14 -51.94 -0.42 0.15 16 44 H 0.39 9.01 7.80 -40.82 -0.32 8.69 16 45 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -29.17 376.70 -7.56 -36.73 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -5.94 Total: 17.77 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.58 Total: 2.20 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.11 Total: -59.54 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.15 Total: -16.80 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.17 -7.56 -36.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269413169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.638 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds