Wall clock time and date at job start Tue Mar 31 2020 19:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46898 * 109.46991 * 47.39597 * 3 2 1 5 5 C 1.46960 * 110.99825 * 170.00064 * 4 3 2 6 6 C 1.53051 * 109.36194 * 183.18771 * 5 4 3 7 7 N 1.46961 * 109.36678 * 301.59945 * 6 5 4 8 8 C 1.46898 * 111.00136 * 183.18880 * 7 6 5 9 9 H 1.09001 * 110.88871 * 298.01764 * 8 7 6 10 10 C 1.55161 * 111.00295 * 61.94144 * 8 7 6 11 11 C 1.54330 * 103.02007 * 153.37876 * 10 8 7 12 12 N 1.47022 * 107.26839 * 338.14485 * 11 10 8 13 13 C 1.34775 * 125.65093 * 178.84857 * 12 11 10 14 14 O 1.21278 * 120.00139 * 179.68418 * 13 12 11 15 15 C 1.50700 * 119.99970 * 359.69268 * 13 12 11 16 16 S 1.80998 * 109.47278 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00048 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00046 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99900 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99672 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47375 * 270.00051 * 21 19 17 23 23 H 1.48501 * 109.47090 * 30.00148 * 21 19 17 24 24 H 1.48507 * 109.46643 * 150.00008 * 21 19 17 25 25 C 1.47423 * 108.70007 * 358.58212 * 12 11 10 26 26 C 1.46960 * 110.88106 * 59.32180 * 7 6 5 27 27 C 1.46961 * 111.00136 * 293.80075 * 4 3 2 28 28 H 4.40886 * 5.52148 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46705 * 287.39869 * 3 2 1 30 30 H 1.08998 * 109.46877 * 167.39722 * 3 2 1 31 31 H 1.08995 * 109.48670 * 63.22119 * 5 4 3 32 32 H 1.08996 * 109.48519 * 303.15083 * 5 4 3 33 33 H 1.09003 * 109.48906 * 181.63316 * 6 5 4 34 34 H 1.09006 * 109.51005 * 61.57328 * 6 5 4 35 35 H 1.08998 * 110.72240 * 271.93882 * 10 8 7 36 36 H 1.09006 * 110.72123 * 35.03437 * 10 8 7 37 37 H 1.08998 * 109.99455 * 218.66496 * 11 10 8 38 38 H 1.09004 * 109.78090 * 97.49649 * 11 10 8 39 39 H 1.08995 * 109.47441 * 59.99742 * 15 13 12 40 40 H 1.09004 * 109.46924 * 299.99565 * 15 13 12 41 41 H 0.97001 * 119.99638 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.36713 * 143.19796 * 25 12 11 43 43 H 1.09004 * 110.36569 * 265.51834 * 25 12 11 44 44 H 1.08995 * 109.48670 * 60.64760 * 26 7 6 45 45 H 1.08996 * 109.48519 * 180.71795 * 26 7 6 46 46 H 1.08998 * 109.48732 * 296.77850 * 27 4 3 47 47 H 1.09003 * 109.48697 * 56.84362 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1361 -0.9367 -1.0194 5 6 4.5855 -0.7919 -1.2146 6 6 5.0421 -1.7267 -2.3371 7 7 4.6963 -3.1119 -1.9887 8 6 5.1863 -4.0492 -3.0081 9 1 4.7223 -3.8503 -3.9742 10 6 6.7336 -3.9984 -3.1125 11 6 7.0934 -5.4059 -3.6333 12 7 5.9706 -6.2947 -3.3004 13 6 5.8884 -7.6048 -3.6058 14 8 4.9128 -8.2446 -3.2748 15 6 7.0090 -8.2747 -4.3585 16 16 6.6054 -10.0205 -4.6136 17 6 8.0422 -10.5418 -5.4902 18 1 8.8291 -9.8344 -5.7066 19 6 8.1633 -11.8620 -5.9016 20 7 9.2370 -12.2515 -6.5560 21 14 6.8027 -13.0857 -5.5266 22 1 7.0646 -13.7307 -4.2149 23 1 5.4988 -12.3766 -5.4779 24 1 6.7629 -14.1226 -6.5890 25 6 4.9522 -5.5169 -2.5714 26 6 3.2469 -3.2567 -1.7935 27 6 2.7903 -2.3218 -0.6710 28 1 -1.0499 0.0000 -0.0003 29 1 3.0094 -0.3065 0.9807 30 1 3.0089 1.0037 -0.2242 31 1 5.1043 -1.0511 -0.2918 32 1 4.8149 0.2390 -1.4841 33 1 6.1215 -1.6424 -2.4642 34 1 4.5438 -1.4503 -3.2664 35 1 7.0474 -3.2309 -3.8200 36 1 7.1807 -3.8244 -2.1336 37 1 8.0033 -5.7610 -3.1495 38 1 7.2336 -5.3747 -4.7138 39 1 7.9314 -8.1957 -3.7831 40 1 7.1405 -7.7869 -5.3244 41 1 9.3217 -13.1741 -6.8432 42 1 3.9514 -5.8421 -2.8554 43 1 5.0944 -5.6199 -1.4956 44 1 2.7281 -2.9975 -2.7163 45 1 3.0175 -4.2876 -1.5241 46 1 3.2888 -2.5984 0.2580 47 1 1.7109 -2.4062 -0.5440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273374101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:52 Heat of formation + Delta-G solvation = 44.972904 kcal Electronic energy + Delta-G solvation = -26193.522706 eV Core-core repulsion = 22504.460536 eV Total energy + Delta-G solvation = -3689.062170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39507 -39.34105 -37.53847 -35.61242 -33.24797 -32.43611 -31.60392 -31.15718 -29.69157 -28.97598 -27.18361 -25.60774 -24.59338 -24.23405 -22.80985 -20.95531 -20.19539 -19.37483 -18.58972 -17.73992 -17.26550 -16.67940 -16.04552 -15.72679 -15.45314 -15.32861 -15.16984 -14.98015 -14.76753 -14.47512 -14.12160 -13.83101 -13.59402 -13.56456 -13.24846 -12.84932 -12.82093 -12.60141 -12.54702 -12.05848 -11.93229 -11.77515 -11.67016 -11.28119 -11.21416 -11.15509 -11.00165 -10.97629 -10.76016 -10.59968 -10.57648 -9.85536 -9.53389 -8.99891 -8.95283 -8.72774 -8.57738 -8.49384 -6.91715 -6.28587 -4.00313 2.26799 2.44338 2.65032 2.94319 3.12652 3.33682 3.48108 3.51398 3.55279 3.64926 3.96511 4.08107 4.33712 4.36050 4.45580 4.64791 4.67243 4.75502 4.76721 4.86707 4.93988 5.00649 5.01285 5.06520 5.10542 5.13100 5.14854 5.21164 5.36032 5.46380 5.47141 5.52232 5.56500 5.57539 5.58847 5.67301 5.70475 5.81392 5.87744 6.02140 6.29301 6.40849 6.44770 6.65825 6.70497 7.21611 7.57261 7.94480 8.41841 8.43324 9.17651 10.80589 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.001897 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.743603 B =14754.961563 C =15516.174522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.163 3.837 4 N -0.539 5.539 5 C 0.058 3.942 6 C 0.057 3.943 7 N -0.528 5.528 8 C 0.069 3.931 9 H 0.061 0.939 10 C -0.122 4.122 11 C 0.102 3.898 12 N -0.624 5.624 13 C 0.548 3.452 14 O -0.518 6.518 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.274 1.274 25 C 0.119 3.881 26 C 0.054 3.946 27 C 0.058 3.942 28 H 0.217 0.783 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.155 28.782 12.081 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.183 4.183 3 C 0.037 3.963 4 N -0.264 5.264 5 C -0.070 4.070 6 C -0.071 4.071 7 N -0.254 5.254 8 C -0.040 4.040 9 H 0.079 0.921 10 C -0.160 4.160 11 C -0.022 4.022 12 N -0.362 5.362 13 C 0.336 3.664 14 O -0.392 6.392 15 C -0.268 4.268 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.199 1.199 25 C -0.005 4.005 26 C -0.074 4.074 27 C -0.070 4.070 28 H 0.234 0.766 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.469 27.580 12.448 32.360 hybrid contribution 0.629 0.132 -0.403 0.759 sum -10.840 27.712 12.045 32.102 Atomic orbital electron populations 1.24933 0.95942 1.00109 1.00340 1.22802 0.94168 1.00832 1.00517 1.18970 0.85264 0.97809 0.94307 1.62134 1.14293 1.05190 1.44786 1.22179 0.86565 0.99674 0.98541 1.22157 1.00921 0.87128 0.96863 1.62159 1.14027 1.04591 1.44603 1.22776 0.95765 0.92045 0.93414 0.92150 1.22697 0.94479 0.96095 1.02708 1.22021 0.90246 0.89135 1.00753 1.48375 1.20686 1.08703 1.58425 1.19982 0.88010 0.79531 0.78845 1.90705 1.32979 1.62515 1.53051 1.23249 0.99363 1.01607 1.02535 1.84790 1.30391 1.01673 1.74775 1.22309 1.04032 0.99314 1.41199 0.89381 1.24708 0.95676 0.97462 0.93424 1.69938 1.26953 1.18013 1.36762 0.86738 0.84188 0.81969 0.78985 1.19191 1.15923 1.19932 1.22073 0.92886 0.88459 0.97039 1.22207 0.87224 0.99804 0.98156 1.22193 1.00850 0.86805 0.97122 0.76597 0.92258 0.88431 0.93455 0.89923 0.89657 0.93731 0.90113 0.89413 0.90826 0.91089 0.88541 0.88535 0.91948 0.90656 0.90654 0.93662 0.89656 0.93557 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 19.25 29.55 0.57 -0.78 16 2 C -0.18 -1.41 12.40 -37.12 -0.46 -1.87 16 3 C 0.16 1.01 5.46 -6.61 -0.04 0.97 16 4 N -0.54 -3.88 4.69 -237.97 -1.12 -5.00 16 5 C 0.06 0.34 5.61 -3.76 -0.02 0.32 16 6 C 0.06 0.38 5.44 -3.76 -0.02 0.35 16 7 N -0.53 -4.24 4.61 -223.92 -1.03 -5.27 16 8 C 0.07 0.61 2.71 -65.56 -0.18 0.44 16 9 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 10 C -0.12 -0.93 5.35 -24.89 -0.13 -1.07 16 11 C 0.10 1.05 6.49 -3.06 -0.02 1.03 16 12 N -0.62 -8.78 3.33 -170.52 -0.57 -9.35 16 13 C 0.55 10.27 7.87 -10.99 -0.09 10.18 16 14 O -0.52 -11.63 16.12 5.56 0.09 -11.54 16 15 C -0.12 -2.33 5.35 36.01 0.19 -2.14 16 16 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 21 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.12 1.41 5.35 -2.53 -0.01 1.40 16 26 C 0.05 0.45 5.44 -3.76 -0.02 0.43 16 27 C 0.06 0.45 5.43 -3.76 -0.02 0.43 16 28 H 0.22 0.82 7.80 -54.10 -0.42 0.40 16 29 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 30 H 0.10 0.46 8.03 -51.93 -0.42 0.04 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.09 0.46 7.04 -51.93 -0.37 0.09 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.48 8.02 -51.93 -0.42 0.06 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 40 H 0.10 1.80 8.14 -51.91 -0.42 1.37 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.08 0.98 7.83 -51.93 -0.41 0.57 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.72 6.99 -51.93 -0.36 0.36 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.64 7.20 -51.93 -0.37 0.27 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -34.67 392.64 -10.51 -45.18 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.83 Total: -3.29 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.03 Total: -2.37 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -1.94 Total: -45.43 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.67 -10.51 -45.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273374101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.153 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds