Wall clock time and date at job start Tue Mar 31 2020 19:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46898 * 109.46991 * 47.39597 * 3 2 1 5 5 C 1.46960 * 110.99825 * 170.00064 * 4 3 2 6 6 C 1.53051 * 109.36194 * 183.18771 * 5 4 3 7 7 N 1.46961 * 109.36678 * 301.59945 * 6 5 4 8 8 C 1.46898 * 111.00136 * 183.18880 * 7 6 5 9 9 H 1.09001 * 110.88871 * 298.01764 * 8 7 6 10 10 C 1.55161 * 111.00295 * 61.94144 * 8 7 6 11 11 C 1.54330 * 103.02007 * 153.37876 * 10 8 7 12 12 N 1.47022 * 107.26839 * 338.14485 * 11 10 8 13 13 C 1.34775 * 125.65093 * 178.84857 * 12 11 10 14 14 O 1.21278 * 120.00139 * 179.68418 * 13 12 11 15 15 C 1.50700 * 119.99970 * 359.69268 * 13 12 11 16 16 S 1.80998 * 109.47278 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00048 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00046 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99900 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99672 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47375 * 270.00051 * 21 19 17 23 23 H 1.48501 * 109.47090 * 30.00148 * 21 19 17 24 24 H 1.48507 * 109.46643 * 150.00008 * 21 19 17 25 25 C 1.47423 * 108.70007 * 358.58212 * 12 11 10 26 26 C 1.46960 * 110.88106 * 59.32180 * 7 6 5 27 27 C 1.46961 * 111.00136 * 293.80075 * 4 3 2 28 28 H 4.40886 * 5.52148 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.46705 * 287.39869 * 3 2 1 30 30 H 1.08998 * 109.46877 * 167.39722 * 3 2 1 31 31 H 1.08995 * 109.48670 * 63.22119 * 5 4 3 32 32 H 1.08996 * 109.48519 * 303.15083 * 5 4 3 33 33 H 1.09003 * 109.48906 * 181.63316 * 6 5 4 34 34 H 1.09006 * 109.51005 * 61.57328 * 6 5 4 35 35 H 1.08998 * 110.72240 * 271.93882 * 10 8 7 36 36 H 1.09006 * 110.72123 * 35.03437 * 10 8 7 37 37 H 1.08998 * 109.99455 * 218.66496 * 11 10 8 38 38 H 1.09004 * 109.78090 * 97.49649 * 11 10 8 39 39 H 1.08995 * 109.47441 * 59.99742 * 15 13 12 40 40 H 1.09004 * 109.46924 * 299.99565 * 15 13 12 41 41 H 0.97001 * 119.99638 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.36713 * 143.19796 * 25 12 11 43 43 H 1.09004 * 110.36569 * 265.51834 * 25 12 11 44 44 H 1.08995 * 109.48670 * 60.64760 * 26 7 6 45 45 H 1.08996 * 109.48519 * 180.71795 * 26 7 6 46 46 H 1.08998 * 109.48732 * 296.77850 * 27 4 3 47 47 H 1.09003 * 109.48697 * 56.84362 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1361 -0.9367 -1.0194 5 6 4.5855 -0.7919 -1.2146 6 6 5.0421 -1.7267 -2.3371 7 7 4.6963 -3.1119 -1.9887 8 6 5.1863 -4.0492 -3.0081 9 1 4.7223 -3.8503 -3.9742 10 6 6.7336 -3.9984 -3.1125 11 6 7.0934 -5.4059 -3.6333 12 7 5.9706 -6.2947 -3.3004 13 6 5.8884 -7.6048 -3.6058 14 8 4.9128 -8.2446 -3.2748 15 6 7.0090 -8.2747 -4.3585 16 16 6.6054 -10.0205 -4.6136 17 6 8.0422 -10.5418 -5.4902 18 1 8.8291 -9.8344 -5.7066 19 6 8.1633 -11.8620 -5.9016 20 7 9.2370 -12.2515 -6.5560 21 14 6.8027 -13.0857 -5.5266 22 1 7.0646 -13.7307 -4.2149 23 1 5.4988 -12.3766 -5.4779 24 1 6.7629 -14.1226 -6.5890 25 6 4.9522 -5.5169 -2.5714 26 6 3.2469 -3.2567 -1.7935 27 6 2.7903 -2.3218 -0.6710 28 1 -1.0499 0.0000 -0.0003 29 1 3.0094 -0.3065 0.9807 30 1 3.0089 1.0037 -0.2242 31 1 5.1043 -1.0511 -0.2918 32 1 4.8149 0.2390 -1.4841 33 1 6.1215 -1.6424 -2.4642 34 1 4.5438 -1.4503 -3.2664 35 1 7.0474 -3.2309 -3.8200 36 1 7.1807 -3.8244 -2.1336 37 1 8.0033 -5.7610 -3.1495 38 1 7.2336 -5.3747 -4.7138 39 1 7.9314 -8.1957 -3.7831 40 1 7.1405 -7.7869 -5.3244 41 1 9.3217 -13.1741 -6.8432 42 1 3.9514 -5.8421 -2.8554 43 1 5.0944 -5.6199 -1.4956 44 1 2.7281 -2.9975 -2.7163 45 1 3.0175 -4.2876 -1.5241 46 1 3.2888 -2.5984 0.2580 47 1 1.7109 -2.4062 -0.5440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273374101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:51 Heat of formation + Delta-G solvation = 20.386253 kcal Electronic energy + Delta-G solvation = -26194.588863 eV Core-core repulsion = 22504.460536 eV Total energy + Delta-G solvation = -3690.128327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32781 -40.26605 -38.55328 -36.39339 -34.68147 -33.86183 -32.41350 -32.01422 -30.78420 -29.84870 -28.08024 -27.76630 -25.31475 -24.82692 -23.69276 -21.69140 -20.79678 -20.73006 -19.61343 -19.06134 -18.24425 -17.91667 -17.15166 -16.89882 -16.67993 -16.23031 -15.92844 -15.87444 -15.78200 -15.58658 -15.43027 -14.91854 -14.76462 -14.42252 -14.29135 -14.06102 -13.85693 -13.57424 -13.38278 -13.34157 -13.08705 -13.01755 -12.77186 -12.68701 -12.38922 -12.25081 -11.90069 -11.86102 -11.82704 -11.63032 -11.29592 -11.17874 -11.08686 -11.06344 -10.55513 -9.76823 -9.51370 -9.31704 -9.02309 -8.52292 -6.23737 0.94154 1.30700 1.43743 1.47652 1.51781 1.74653 1.92099 1.97933 2.24360 2.65641 2.82211 2.85900 3.05792 3.26813 3.52039 3.62499 3.74242 3.85428 4.02147 4.13606 4.15356 4.21203 4.26221 4.31644 4.34767 4.39159 4.45044 4.49527 4.58556 4.61809 4.63694 4.77760 4.81902 4.83877 4.89177 4.95386 5.02487 5.04273 5.12275 5.18227 5.27057 5.70128 5.85518 5.88923 6.07905 6.09100 6.10542 6.31858 6.70951 6.92792 7.01258 8.59962 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.001897 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.743603 B =14754.961563 C =15516.174522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.212 4.212 3 C 0.162 3.838 4 N -0.550 5.550 5 C 0.059 3.941 6 C 0.057 3.943 7 N -0.529 5.529 8 C 0.080 3.920 9 H 0.058 0.942 10 C -0.107 4.107 11 C 0.090 3.910 12 N -0.615 5.615 13 C 0.547 3.453 14 O -0.565 6.565 15 C -0.101 4.101 16 S -0.177 6.177 17 C -0.529 4.529 18 H 0.064 0.936 19 C 0.048 3.952 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.238 1.238 24 H -0.258 1.258 25 C 0.117 3.883 26 C 0.057 3.943 27 C 0.065 3.935 28 H 0.239 0.761 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.038 0.962 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.277 0.723 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.043 0.957 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 31.006 12.661 34.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.212 4.212 3 C 0.036 3.964 4 N -0.275 5.275 5 C -0.068 4.068 6 C -0.070 4.070 7 N -0.254 5.254 8 C -0.029 4.029 9 H 0.076 0.924 10 C -0.145 4.145 11 C -0.032 4.032 12 N -0.350 5.350 13 C 0.335 3.665 14 O -0.444 6.444 15 C -0.252 4.252 16 S 0.050 5.950 17 C -0.676 4.676 18 H 0.082 0.918 19 C -0.158 4.158 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.162 1.162 24 H -0.182 1.182 25 C -0.006 4.006 26 C -0.072 4.072 27 C -0.063 4.063 28 H 0.256 0.744 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.056 0.944 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.366 29.869 13.029 34.512 hybrid contribution 0.621 -0.366 -0.545 0.904 sum -10.745 29.502 12.484 33.788 Atomic orbital electron populations 1.25667 0.96907 0.99501 0.99701 1.23377 0.95167 1.01484 1.01187 1.19070 0.84602 0.98332 0.94382 1.62136 1.15282 1.04763 1.45292 1.22240 0.85652 1.00578 0.98330 1.22257 1.01990 0.85965 0.96809 1.62180 1.13604 1.05458 1.44185 1.22628 0.96935 0.90083 0.93292 0.92428 1.22688 0.92983 0.94940 1.03886 1.22393 0.89191 0.89854 1.01746 1.48327 1.22240 1.07583 1.56877 1.19681 0.86968 0.80950 0.78857 1.90684 1.34409 1.64077 1.55224 1.23190 1.00535 0.97455 1.03983 1.84736 1.29137 1.06836 1.74306 1.22433 1.04579 0.99221 1.41387 0.91821 1.25533 0.97766 0.99207 0.93297 1.70009 1.28590 1.18908 1.37751 0.85891 0.81258 0.80001 0.79369 1.18673 1.16241 1.18187 1.22181 0.91506 0.90209 0.96702 1.22148 0.87549 0.99552 0.97925 1.22064 1.00332 0.87330 0.96586 0.74413 0.91664 0.86872 0.93347 0.88037 0.87778 0.94378 0.87294 0.88508 0.89913 0.90111 0.87031 0.87010 0.91329 0.92313 0.90727 0.94660 0.90480 0.93874 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 19.25 74.32 1.43 -1.15 16 2 C -0.21 -3.09 12.40 31.13 0.39 -2.70 16 3 C 0.16 1.77 5.46 84.50 0.46 2.24 16 4 N -0.55 -7.07 4.69 -906.81 -4.25 -11.32 16 5 C 0.06 0.55 5.61 86.31 0.48 1.03 16 6 C 0.06 0.59 5.44 86.31 0.47 1.06 16 7 N -0.53 -7.46 4.61 -862.34 -3.97 -11.44 16 8 C 0.08 1.25 2.71 46.31 0.13 1.38 16 9 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 10 C -0.11 -1.25 5.35 31.79 0.17 -1.08 16 11 C 0.09 1.61 6.49 86.73 0.56 2.17 16 12 N -0.62 -16.49 3.33 -811.79 -2.70 -19.19 16 13 C 0.55 20.26 7.87 87.66 0.69 20.95 16 14 O -0.57 -25.67 16.12 -3.02 -0.05 -25.72 16 15 C -0.10 -3.95 5.35 71.24 0.38 -3.57 16 16 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 17 C -0.53 -30.98 10.04 67.96 0.68 -30.30 16 18 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 19 C 0.05 2.81 5.50 84.86 0.47 3.27 16 20 N -0.91 -55.69 13.97 21.65 0.30 -55.38 16 21 Si 0.91 45.31 27.74 68.60 1.90 47.22 16 22 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 25 C 0.12 2.68 5.35 86.85 0.46 3.14 16 26 C 0.06 0.90 5.44 86.31 0.47 1.37 16 27 C 0.07 0.95 5.43 86.31 0.47 1.42 16 28 H 0.24 1.49 7.80 -4.42 -0.03 1.46 16 29 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.11 0.84 8.03 -2.39 -0.02 0.82 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.57 8.07 -2.39 -0.02 0.55 16 33 H 0.10 0.70 7.04 -2.39 -0.02 0.68 16 34 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.11 0.77 8.02 -2.39 -0.02 0.75 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 40 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 41 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.06 1.55 7.83 -2.39 -0.02 1.53 16 43 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 1.32 6.99 -2.39 -0.02 1.31 16 46 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.07 1.16 7.20 -2.39 -0.02 1.15 16 Total: -1.00 -75.94 392.64 -1.21 -77.15 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.90 Total: 9.64 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 7.71 Total: -0.78 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -10.62 Total: -97.33 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.22 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -75.94 -1.21 -77.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273374101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.532 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds