Wall clock time and date at job start Tue Mar 31 2020 19:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00232 * 2 1 4 4 N 1.46499 * 109.47138 * 125.00168 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.28062 * 4 3 2 6 6 S 1.71198 * 120.00158 * 359.72214 * 5 4 3 7 7 N 1.34775 * 119.99585 * 179.72218 * 5 4 3 8 8 C 1.47134 * 125.60973 * 0.02750 * 7 5 4 9 9 C 1.54584 * 107.33031 * 180.93753 * 8 7 5 10 10 C 1.53707 * 102.78394 * 20.87869 * 9 8 7 11 11 C 1.53219 * 111.52719 * 86.21457 * 10 9 8 12 12 C 1.54800 * 101.38559 * 98.87870 * 11 10 9 13 13 N 1.46925 * 105.54186 * 24.17034 * 12 11 10 14 14 C 1.46503 * 124.37627 * 163.24930 * 13 12 11 15 15 C 1.53001 * 109.46881 * 90.00325 * 14 13 12 16 16 C 1.50704 * 109.47088 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00021 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00022 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47435 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47383 * 120.00090 * 20 18 16 23 23 H 1.48502 * 109.46899 * 239.99811 * 20 18 16 24 24 C 1.34893 * 111.24712 * 343.25423 * 13 12 11 25 25 O 1.21276 * 125.22186 * 181.26294 * 24 13 12 26 26 C 1.47713 * 125.60742 * 179.71245 * 7 5 4 27 27 H 1.07999 * 119.99920 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99772 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00318 * 180.02562 * 2 1 3 30 30 H 1.09009 * 109.46601 * 5.00071 * 3 2 1 31 31 H 1.08998 * 109.47035 * 245.00579 * 3 2 1 32 32 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.87274 * 300.36442 * 8 7 5 34 34 H 1.08999 * 109.87841 * 61.49811 * 8 7 5 35 35 H 1.08998 * 110.75529 * 139.20561 * 9 8 7 36 36 H 1.09006 * 110.74831 * 262.56021 * 9 8 7 37 37 H 1.08994 * 111.03825 * 216.90892 * 11 10 9 38 38 H 1.08996 * 111.03923 * 340.80973 * 11 10 9 39 39 H 1.09006 * 110.22808 * 143.18960 * 12 11 10 40 40 H 1.08997 * 110.23394 * 265.06840 * 12 11 10 41 41 H 1.08994 * 109.47343 * 209.99967 * 14 13 12 42 42 H 1.08997 * 109.47346 * 330.00193 * 14 13 12 43 43 H 1.09001 * 109.47210 * 300.00068 * 15 14 13 44 44 H 1.08997 * 109.47239 * 59.99801 * 15 14 13 45 45 H 0.96998 * 120.00401 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.39356 * 276.20420 * 26 7 5 47 47 H 1.08998 * 110.38581 * 38.58809 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7747 2.4111 1.3363 6 16 3.6845 3.7478 0.2705 7 7 4.6265 2.4380 2.3804 8 6 4.8046 1.3626 3.3687 9 6 5.8622 1.8444 4.3880 10 6 5.8295 3.3715 4.2159 11 6 4.7449 4.0124 5.0879 12 6 5.5754 4.4990 6.3002 13 7 6.9466 4.6617 5.7983 14 6 7.9926 5.4261 6.4823 15 6 8.7587 4.5042 7.4331 16 6 9.8351 5.2903 8.1363 17 1 9.9601 6.3424 7.9263 18 6 10.6598 4.6668 9.0485 19 7 10.5074 3.3859 9.3046 20 14 11.9936 5.6414 9.9206 21 1 11.9577 7.0523 9.4591 22 1 11.7631 5.5936 11.3868 23 1 13.3208 5.0527 9.6087 24 6 7.1179 4.0164 4.6261 25 8 8.1557 3.9657 4.0007 26 6 5.5396 3.5492 2.7171 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.0446 0.5746 1.7355 33 1 3.8609 1.1676 3.8783 34 1 5.1538 0.4572 2.8723 35 1 5.5774 1.5638 5.4020 36 1 6.8469 1.4488 4.1389 37 1 4.2743 4.8506 4.5741 38 1 4.0015 3.2757 5.3923 39 1 5.1907 5.4525 6.6623 40 1 5.5501 3.7558 7.0972 41 1 8.6805 5.8405 5.7454 42 1 7.5373 6.2370 7.0507 43 1 8.0708 4.0897 8.1701 44 1 9.2141 3.6933 6.8647 45 1 11.0873 2.9472 9.9466 46 1 6.4598 3.4735 2.1378 47 1 5.0537 4.5080 2.5360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275738560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:03 Heat of formation + Delta-G solvation = 8.312786 kcal Electronic energy + Delta-G solvation = -26803.886746 eV Core-core repulsion = 23113.234874 eV Total energy + Delta-G solvation = -3690.651872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36042 -39.36898 -37.50372 -36.13601 -34.76230 -33.58760 -32.41281 -31.00349 -29.54755 -28.42645 -27.01835 -25.23979 -24.68701 -23.95160 -22.08719 -21.63702 -20.60530 -20.48589 -19.00396 -18.30421 -17.43198 -16.69878 -16.55538 -16.00830 -15.86705 -15.64163 -15.25239 -14.81216 -14.55234 -14.32902 -14.11686 -13.95234 -13.57075 -13.52676 -13.26544 -13.01960 -12.76223 -12.59342 -12.33759 -12.14739 -11.93922 -11.75324 -11.58655 -11.38039 -11.22828 -11.15826 -11.01022 -10.93640 -10.70610 -10.21744 -10.07888 -9.92138 -9.51254 -9.22247 -9.18113 -8.42809 -8.13560 -7.95286 -7.62406 -6.07937 -4.11233 1.21230 1.36181 1.78500 2.35369 2.75688 2.99769 3.27503 3.34311 3.37550 3.43411 3.92079 4.09526 4.18306 4.21157 4.41423 4.50381 4.52868 4.57809 4.73553 4.94814 5.02161 5.03174 5.07701 5.24287 5.27043 5.28813 5.43578 5.48787 5.50415 5.55313 5.61289 5.65801 5.75035 5.90666 5.93982 5.97157 5.99668 6.13660 6.39558 6.40489 6.72763 6.87404 6.94929 7.38013 7.59391 7.75408 7.91133 8.27054 8.50462 8.95490 9.53332 11.03524 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.002120 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.977863 B =13206.666289 C =13523.423457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.185 4.185 3 C 0.154 3.846 4 N -0.685 5.685 5 C 0.582 3.418 6 S -0.652 6.652 7 N -0.572 5.572 8 C 0.084 3.916 9 C -0.104 4.104 10 C -0.114 4.114 11 C -0.118 4.118 12 C 0.102 3.898 13 N -0.607 5.607 14 C 0.127 3.873 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.532 3.468 25 O -0.520 6.520 26 C 0.140 3.860 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.397 0.603 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.096 0.904 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.918 -9.283 -12.321 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.204 4.204 3 C 0.031 3.969 4 N -0.316 5.316 5 C 0.223 3.777 6 S -0.525 6.525 7 N -0.282 5.282 8 C -0.041 4.041 9 C -0.143 4.143 10 C -0.119 4.119 11 C -0.156 4.156 12 C -0.022 4.022 13 N -0.340 5.340 14 C 0.008 3.992 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.317 3.683 25 O -0.396 6.396 26 C 0.018 3.982 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.233 0.767 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.343 -8.535 -13.247 26.530 hybrid contribution 0.805 -0.828 1.525 1.913 sum -20.538 -9.363 -11.722 25.433 Atomic orbital electron populations 1.24043 0.95688 1.02721 0.96924 1.23010 0.96352 0.97924 1.03083 1.20753 0.91345 0.96068 0.88695 1.44947 1.39173 1.16620 1.30831 1.21751 0.80387 0.90065 0.85457 1.93560 1.84717 1.27656 1.46540 1.47578 1.36781 1.19789 1.24015 1.22491 1.00431 0.90783 0.90440 1.22403 0.99941 0.92234 0.99704 1.21606 0.96974 0.97201 0.96094 1.22543 0.96250 1.01179 0.95623 1.22117 0.81712 1.02130 0.96214 1.48646 1.12198 1.51224 1.21907 1.21863 0.87608 0.94155 0.95609 1.19413 0.94680 0.95100 0.93420 1.21126 1.15783 0.96014 1.23153 0.92354 1.25001 0.97561 0.94919 0.96820 1.69975 1.39070 1.09597 1.34575 0.86485 0.81704 0.80270 0.79251 1.19613 1.20995 1.20936 1.19655 0.88290 0.78926 0.81443 1.90738 1.30665 1.60783 1.57381 1.22299 0.93471 0.90174 0.92275 0.87825 0.87678 0.86702 0.89162 0.88764 0.76654 0.90270 0.90176 0.88325 0.88822 0.89462 0.89409 0.90215 0.90864 0.90932 0.91395 0.96472 0.96084 0.92981 0.88558 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 14.32 29.01 0.42 -0.18 16 2 C -0.19 -0.81 9.63 -36.02 -0.35 -1.16 16 3 C 0.15 1.04 5.57 -5.19 -0.03 1.01 16 4 N -0.68 -4.93 5.51 -63.21 -0.35 -5.28 16 5 C 0.58 6.25 7.88 -86.92 -0.68 5.56 16 6 S -0.65 -9.99 28.04 -107.50 -3.01 -13.01 16 7 N -0.57 -5.54 3.34 -172.81 -0.58 -6.12 16 8 C 0.08 0.56 6.09 -2.86 -0.02 0.55 16 9 C -0.10 -0.96 5.82 -25.53 -0.15 -1.11 16 10 C -0.11 -1.32 0.68 -155.25 -0.11 -1.42 16 11 C -0.12 -1.09 6.18 -25.67 -0.16 -1.25 16 12 C 0.10 1.21 7.37 -2.86 -0.02 1.18 16 13 N -0.61 -10.15 2.95 -172.57 -0.51 -10.65 16 14 C 0.13 2.57 5.88 -4.04 -0.02 2.55 16 15 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 16 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 20 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.53 9.00 6.91 -11.37 -0.08 8.93 16 25 O -0.52 -11.05 17.23 5.56 0.10 -10.95 16 26 C 0.14 1.67 5.61 -3.02 -0.02 1.65 16 27 H 0.10 0.39 7.84 -52.49 -0.41 -0.03 16 28 H 0.10 0.28 8.06 -52.48 -0.42 -0.15 16 29 H 0.12 0.39 8.06 -52.49 -0.42 -0.03 16 30 H 0.09 0.70 7.64 -51.92 -0.40 0.30 16 31 H 0.09 0.76 8.00 -51.93 -0.42 0.34 16 32 H 0.40 1.86 7.45 -40.82 -0.30 1.56 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.78 7.97 -51.93 -0.41 0.36 16 36 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 37 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 38 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.56 7.96 -51.93 -0.41 1.14 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.10 1.35 7.76 -51.93 -0.40 0.95 16 47 H 0.11 1.36 7.16 -51.93 -0.37 0.99 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -36.06 397.57 -12.12 -48.18 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.70 Total: -2.06 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.77 Total: 3.24 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.70 Total: -47.76 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.10 Total: -10.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -9.99 SS G_CDS: -3.01 Total: -13.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.06 -12.12 -48.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275738560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.493 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds