Wall clock time and date at job start Tue Mar 31 2020 19:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00232 * 2 1 4 4 N 1.46499 * 109.47138 * 125.00168 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.28062 * 4 3 2 6 6 S 1.71198 * 120.00158 * 359.72214 * 5 4 3 7 7 N 1.34775 * 119.99585 * 179.72218 * 5 4 3 8 8 C 1.47134 * 125.60973 * 0.02750 * 7 5 4 9 9 C 1.54584 * 107.33031 * 180.93753 * 8 7 5 10 10 C 1.53707 * 102.78394 * 20.87869 * 9 8 7 11 11 C 1.53219 * 111.52719 * 86.21457 * 10 9 8 12 12 C 1.54800 * 101.38559 * 98.87870 * 11 10 9 13 13 N 1.46925 * 105.54186 * 24.17034 * 12 11 10 14 14 C 1.46503 * 124.37627 * 163.24930 * 13 12 11 15 15 C 1.53001 * 109.46881 * 90.00325 * 14 13 12 16 16 C 1.50704 * 109.47088 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00021 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00022 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47435 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47383 * 120.00090 * 20 18 16 23 23 H 1.48502 * 109.46899 * 239.99811 * 20 18 16 24 24 C 1.34893 * 111.24712 * 343.25423 * 13 12 11 25 25 O 1.21276 * 125.22186 * 181.26294 * 24 13 12 26 26 C 1.47713 * 125.60742 * 179.71245 * 7 5 4 27 27 H 1.07999 * 119.99920 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99772 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00318 * 180.02562 * 2 1 3 30 30 H 1.09009 * 109.46601 * 5.00071 * 3 2 1 31 31 H 1.08998 * 109.47035 * 245.00579 * 3 2 1 32 32 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.87274 * 300.36442 * 8 7 5 34 34 H 1.08999 * 109.87841 * 61.49811 * 8 7 5 35 35 H 1.08998 * 110.75529 * 139.20561 * 9 8 7 36 36 H 1.09006 * 110.74831 * 262.56021 * 9 8 7 37 37 H 1.08994 * 111.03825 * 216.90892 * 11 10 9 38 38 H 1.08996 * 111.03923 * 340.80973 * 11 10 9 39 39 H 1.09006 * 110.22808 * 143.18960 * 12 11 10 40 40 H 1.08997 * 110.23394 * 265.06840 * 12 11 10 41 41 H 1.08994 * 109.47343 * 209.99967 * 14 13 12 42 42 H 1.08997 * 109.47346 * 330.00193 * 14 13 12 43 43 H 1.09001 * 109.47210 * 300.00068 * 15 14 13 44 44 H 1.08997 * 109.47239 * 59.99801 * 15 14 13 45 45 H 0.96998 * 120.00401 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.39356 * 276.20420 * 26 7 5 47 47 H 1.08998 * 110.38581 * 38.58809 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7747 2.4111 1.3363 6 16 3.6845 3.7478 0.2705 7 7 4.6265 2.4380 2.3804 8 6 4.8046 1.3626 3.3687 9 6 5.8622 1.8444 4.3880 10 6 5.8295 3.3715 4.2159 11 6 4.7449 4.0124 5.0879 12 6 5.5754 4.4990 6.3002 13 7 6.9466 4.6617 5.7983 14 6 7.9926 5.4261 6.4823 15 6 8.7587 4.5042 7.4331 16 6 9.8351 5.2903 8.1363 17 1 9.9601 6.3424 7.9263 18 6 10.6598 4.6668 9.0485 19 7 10.5074 3.3859 9.3046 20 14 11.9936 5.6414 9.9206 21 1 11.9577 7.0523 9.4591 22 1 11.7631 5.5936 11.3868 23 1 13.3208 5.0527 9.6087 24 6 7.1179 4.0164 4.6261 25 8 8.1557 3.9657 4.0007 26 6 5.5396 3.5492 2.7171 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.0446 0.5746 1.7355 33 1 3.8609 1.1676 3.8783 34 1 5.1538 0.4572 2.8723 35 1 5.5774 1.5638 5.4020 36 1 6.8469 1.4488 4.1389 37 1 4.2743 4.8506 4.5741 38 1 4.0015 3.2757 5.3923 39 1 5.1907 5.4525 6.6623 40 1 5.5501 3.7558 7.0972 41 1 8.6805 5.8405 5.7454 42 1 7.5373 6.2370 7.0507 43 1 8.0708 4.0897 8.1701 44 1 9.2141 3.6933 6.8647 45 1 11.0873 2.9472 9.9466 46 1 6.4598 3.4735 2.1378 47 1 5.0537 4.5080 2.5360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275738560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:02 Heat of formation + Delta-G solvation = -14.892345 kcal Electronic energy + Delta-G solvation = -26804.892996 eV Core-core repulsion = 23113.234874 eV Total energy + Delta-G solvation = -3691.658122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40721 -40.35121 -38.35805 -37.50143 -35.91384 -34.96798 -33.63904 -32.11348 -30.77720 -29.60366 -27.79378 -26.88932 -25.55372 -24.97333 -23.61622 -22.51551 -21.77490 -21.03314 -20.17799 -19.11262 -18.69496 -18.26891 -17.41355 -17.22029 -16.84905 -16.65428 -16.47733 -16.20384 -15.77558 -15.23664 -15.04114 -14.78476 -14.62352 -14.55787 -14.42587 -14.21472 -14.16212 -13.80653 -13.41353 -13.16789 -13.08956 -12.89739 -12.87315 -12.53698 -12.33648 -12.23406 -12.12624 -12.04781 -11.99484 -11.86868 -11.67726 -11.39165 -10.81851 -10.60343 -10.57512 -9.92029 -9.59466 -9.06481 -8.80594 -8.24705 -6.36406 0.32804 0.68740 1.09980 1.38649 1.40185 1.41631 1.52528 1.54969 2.11922 2.35909 2.41181 3.01725 3.09363 3.19582 3.33710 3.66916 3.78822 3.85412 3.99179 4.11267 4.14235 4.26965 4.31482 4.36333 4.51291 4.55539 4.57854 4.60252 4.65326 4.71587 4.78866 4.81180 4.85282 4.88186 4.97372 5.01068 5.10917 5.32597 5.41443 5.46250 5.53984 5.58341 5.64526 5.74529 5.81462 6.15059 6.23598 6.29422 6.78800 7.13222 7.33272 8.87430 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.002120 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.977863 B =13206.666289 C =13523.423457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.188 4.188 3 C 0.156 3.844 4 N -0.658 5.658 5 C 0.604 3.396 6 S -0.752 6.752 7 N -0.564 5.564 8 C 0.087 3.913 9 C -0.104 4.104 10 C -0.103 4.103 11 C -0.101 4.101 12 C 0.094 3.906 13 N -0.615 5.615 14 C 0.141 3.859 15 C 0.025 3.975 16 C -0.544 4.544 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.283 1.283 24 C 0.518 3.482 25 O -0.578 6.578 26 C 0.148 3.852 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.417 0.583 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.005 0.995 44 H -0.024 1.024 45 H 0.264 0.736 46 H 0.066 0.934 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.519 -10.737 -10.871 28.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.207 4.207 3 C 0.033 3.967 4 N -0.288 5.288 5 C 0.241 3.759 6 S -0.625 6.625 7 N -0.272 5.272 8 C -0.036 4.036 9 C -0.143 4.143 10 C -0.107 4.107 11 C -0.138 4.138 12 C -0.028 4.028 13 N -0.346 5.346 14 C 0.019 3.981 15 C -0.013 4.013 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.792 3.208 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.209 1.209 24 C 0.305 3.695 25 O -0.457 6.457 26 C 0.024 3.976 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.257 0.743 33 H 0.140 0.860 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.023 0.977 44 H -0.006 1.006 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.009 -10.035 -11.769 28.559 hybrid contribution 1.613 -0.472 1.098 2.007 sum -22.396 -10.507 -10.671 26.941 Atomic orbital electron populations 1.24229 0.95558 1.03491 0.95314 1.22905 0.96389 0.96966 1.04401 1.20754 0.90880 0.97378 0.87703 1.44894 1.37461 1.15703 1.30749 1.21082 0.80817 0.89504 0.84541 1.93780 1.87094 1.31688 1.49950 1.47460 1.35674 1.19991 1.24121 1.22766 1.01644 0.89929 0.89273 1.22467 0.99898 0.89981 1.01906 1.21483 0.94573 0.98741 0.95945 1.22599 0.95557 1.02181 0.93456 1.22469 0.79126 1.03679 0.97482 1.48735 1.13524 1.50491 1.21859 1.21405 0.88365 0.93888 0.94418 1.19207 0.94374 0.94429 0.93316 1.21586 1.16644 0.96626 1.23428 0.91722 1.25964 1.00052 0.95965 0.97663 1.70097 1.40284 1.11310 1.35341 0.85362 0.78164 0.79049 0.78255 1.18468 1.19854 1.20859 1.20623 0.89485 0.78353 0.81044 1.90692 1.33416 1.62679 1.58963 1.21985 0.92627 0.90669 0.92279 0.88065 0.85953 0.85112 0.90251 0.90371 0.74317 0.85953 0.87959 0.85950 0.91258 0.88794 0.85301 0.88300 0.90112 0.93065 0.88952 0.97651 1.00597 0.92700 0.91581 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 14.32 67.78 0.97 0.26 16 2 C -0.19 -1.12 9.63 25.65 0.25 -0.87 16 3 C 0.16 1.86 5.57 85.63 0.48 2.34 16 4 N -0.66 -7.69 5.51 -353.90 -1.95 -9.64 16 5 C 0.60 12.08 7.88 179.05 1.41 13.49 16 6 S -0.75 -23.83 28.04 -56.49 -1.58 -25.42 16 7 N -0.56 -9.78 3.34 -700.64 -2.34 -12.11 16 8 C 0.09 0.81 6.09 86.80 0.53 1.34 16 9 C -0.10 -1.67 5.82 31.37 0.18 -1.49 16 10 C -0.10 -2.26 0.68 -52.66 -0.04 -2.30 16 11 C -0.10 -1.53 6.18 31.28 0.19 -1.33 16 12 C 0.09 2.01 7.37 86.91 0.64 2.65 16 13 N -0.61 -20.69 2.95 -818.21 -2.41 -23.10 16 14 C 0.14 5.83 5.88 86.38 0.51 6.34 16 15 C 0.02 1.30 5.30 29.85 0.16 1.46 16 16 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 17 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 18 C 0.00 0.10 5.46 84.65 0.46 0.56 16 19 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 20 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 C 0.52 18.15 6.91 87.36 0.60 18.75 16 25 O -0.58 -26.42 17.23 -3.02 -0.05 -26.47 16 26 C 0.15 3.54 5.61 86.38 0.48 4.02 16 27 H 0.10 0.54 7.84 -2.91 -0.02 0.52 16 28 H 0.12 0.21 8.06 -2.91 -0.02 0.19 16 29 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 30 H 0.08 1.18 7.64 -2.38 -0.02 1.16 16 31 H 0.08 1.24 8.00 -2.39 -0.02 1.23 16 32 H 0.42 2.01 7.45 -92.71 -0.69 1.32 16 33 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 1.43 7.97 -2.39 -0.02 1.41 16 36 H 0.07 1.49 8.07 -2.38 -0.02 1.47 16 37 H 0.09 1.39 7.71 -2.39 -0.02 1.37 16 38 H 0.13 1.00 7.85 -2.39 -0.02 0.98 16 39 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 2.31 7.96 -2.39 -0.02 2.30 16 42 H 0.09 3.34 8.14 -2.39 -0.02 3.33 16 43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 44 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 45 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.07 2.00 7.76 -2.39 -0.02 1.98 16 47 H 0.10 2.52 7.16 -2.39 -0.02 2.50 16 Total: -1.00 -86.28 397.57 1.30 -84.98 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.26 Total: 6.83 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 7.06 Total: 14.71 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -6.42 Total: -100.70 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -23.83 SS G_CDS: -1.58 Total: -25.42 kcal Total: -86.28 1.30 -84.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275738560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.086 kcal (2) G-P(sol) polarization free energy of solvation -86.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds