Wall clock time and date at job start Tue Mar 31 2020 19:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00179 * 2 1 4 4 N 1.46501 * 109.47177 * 124.99892 * 3 2 1 5 5 C 1.34774 * 119.99758 * 180.02562 * 4 3 2 6 6 S 1.71201 * 120.00049 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99714 * 180.02562 * 5 4 3 8 8 C 1.47652 * 125.81283 * 351.94475 * 7 5 4 9 9 C 1.54979 * 104.95068 * 155.96507 * 8 7 5 10 10 C 1.55616 * 101.53961 * 36.59677 * 9 8 7 11 11 C 1.46230 * 125.81128 * 171.97606 * 7 5 4 12 12 C 1.53897 * 110.88590 * 302.26367 * 11 7 5 13 13 C 1.54639 * 101.59061 * 96.54054 * 12 11 7 14 14 N 1.46845 * 105.50772 * 24.77472 * 13 12 11 15 15 C 1.46496 * 124.37162 * 163.09837 * 14 13 12 16 16 C 1.52999 * 109.46748 * 90.00285 * 15 14 13 17 17 C 1.50701 * 109.47203 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99954 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00349 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99610 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00066 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47447 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47288 * 119.99887 * 21 19 17 24 24 H 1.48499 * 109.47301 * 239.99268 * 21 19 17 25 25 C 1.34659 * 111.26109 * 343.12468 * 14 13 12 26 26 O 1.21280 * 125.07492 * 180.85500 * 25 14 13 27 27 H 1.08003 * 119.99846 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99692 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99692 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.46862 * 4.99608 * 3 2 1 31 31 H 1.09000 * 109.46634 * 244.99879 * 3 2 1 32 32 H 0.97003 * 119.99750 * 0.02562 * 4 3 2 33 33 H 1.08992 * 110.36508 * 274.86326 * 8 7 5 34 34 H 1.09004 * 110.36418 * 37.07045 * 8 7 5 35 35 H 1.08999 * 110.99107 * 154.74823 * 9 8 7 36 36 H 1.08999 * 110.98691 * 278.56438 * 9 8 7 37 37 H 1.08997 * 110.74882 * 206.81885 * 10 9 8 38 38 H 1.08995 * 110.74669 * 83.44724 * 10 9 8 39 39 H 1.08997 * 111.00370 * 214.61389 * 12 11 7 40 40 H 1.08999 * 111.00257 * 338.46236 * 12 11 7 41 41 H 1.08995 * 110.24128 * 143.79004 * 13 12 11 42 42 H 1.09003 * 110.23849 * 265.76721 * 13 12 11 43 43 H 1.08990 * 109.47576 * 210.00279 * 15 14 13 44 44 H 1.08999 * 109.47220 * 330.00735 * 15 14 13 45 45 H 1.09006 * 109.47306 * 300.00294 * 16 15 14 46 46 H 1.08997 * 109.47404 * 60.00334 * 16 15 14 47 47 H 0.97008 * 119.99939 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3334 6 16 3.6882 3.7456 0.2674 7 7 4.6345 2.4334 2.3740 8 6 4.7023 1.4361 3.4607 9 6 6.1488 1.5381 4.0074 10 6 6.4165 3.0670 3.8961 11 6 5.6540 3.4525 2.6195 12 6 6.6236 3.5565 1.4289 13 6 6.0199 4.7409 0.6390 14 7 5.2752 5.5325 1.6265 15 6 4.8382 6.9152 1.4185 16 6 3.4430 6.9200 0.7906 17 6 2.9936 8.3424 0.5760 18 1 3.6385 9.1610 0.8594 19 6 1.7588 8.5986 0.0187 20 7 0.9733 7.6017 -0.3260 21 14 1.2016 10.3617 -0.2466 22 1 2.2603 11.2914 0.2221 23 1 0.9477 10.5883 -1.6921 24 1 -0.0467 10.6069 0.5195 25 6 5.0464 4.8236 2.7483 26 8 4.4408 5.2292 3.7176 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 3.0451 0.5744 1.7352 33 1 3.9832 1.6782 4.2431 34 1 4.5142 0.4360 3.0699 35 1 6.1987 1.2055 5.0442 36 1 6.8425 0.9738 3.3841 37 1 7.4824 3.2653 3.7842 38 1 6.0131 3.5936 4.7610 39 1 7.6340 3.7869 1.7668 40 1 6.6111 2.6433 0.8339 41 1 6.8136 5.3417 0.1950 42 1 5.3463 4.3735 -0.1352 43 1 4.8075 7.4346 2.3761 44 1 5.5378 7.4211 0.7530 45 1 3.4737 6.4006 -0.1672 46 1 2.7434 6.4141 1.4560 47 1 0.1046 7.7820 -0.7184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275739581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:05 Heat of formation + Delta-G solvation = 15.185321 kcal Electronic energy + Delta-G solvation = -28503.613521 eV Core-core repulsion = 24813.259665 eV Total energy + Delta-G solvation = -3690.353857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40351 -39.91878 -38.19982 -37.29886 -35.53503 -35.05749 -33.46219 -32.66863 -30.72584 -29.00293 -27.60150 -26.91005 -25.65982 -24.27518 -23.54940 -22.31750 -22.10150 -21.18270 -20.14252 -18.89539 -18.66508 -18.43108 -17.14086 -17.03358 -16.88626 -16.62725 -16.38992 -15.89427 -15.63222 -15.22306 -14.95872 -14.74044 -14.60091 -14.34537 -14.25047 -14.19622 -13.87039 -13.59807 -13.45518 -13.10219 -12.88526 -12.85863 -12.71529 -12.48380 -12.19034 -12.17518 -12.06931 -11.98120 -11.81336 -11.63295 -11.41824 -11.25938 -10.90366 -10.57342 -10.53902 -9.82532 -9.55011 -8.36354 -8.15459 -7.91193 -6.30530 0.34485 0.77663 1.16933 1.31668 1.35225 1.38010 1.51187 2.01072 2.32252 2.42758 2.49970 3.14747 3.26875 3.32494 3.50884 3.73727 3.77376 4.00575 4.08537 4.13506 4.30677 4.37401 4.41114 4.48334 4.53841 4.61170 4.66508 4.71341 4.78832 4.87906 4.91029 4.95812 5.02618 5.04078 5.06737 5.24583 5.46149 5.48804 5.53285 5.58038 5.65990 5.69240 5.73222 5.78054 6.00477 6.25908 6.37243 6.54117 6.88171 7.34745 7.38559 8.95467 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010033 B = 0.004665 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.109972 B = 6000.608819 C = 8035.269613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.178 4.178 3 C 0.156 3.844 4 N -0.661 5.661 5 C 0.559 3.441 6 S -0.672 6.672 7 N -0.556 5.556 8 C 0.073 3.927 9 C -0.106 4.106 10 C -0.114 4.114 11 C 0.144 3.856 12 C -0.109 4.109 13 C 0.072 3.928 14 N -0.571 5.571 15 C 0.143 3.857 16 C 0.054 3.946 17 C -0.551 4.551 18 H 0.062 0.938 19 C -0.001 4.001 20 N -0.927 5.927 21 Si 0.971 3.029 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.280 1.280 25 C 0.501 3.499 26 O -0.597 6.597 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.147 0.853 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.068 0.932 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.001 0.999 46 H -0.037 1.037 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.037 -25.288 6.112 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C 0.033 3.967 4 N -0.293 5.293 5 C 0.200 3.800 6 S -0.539 6.539 7 N -0.267 5.267 8 C -0.051 4.051 9 C -0.143 4.143 10 C -0.152 4.152 11 C 0.055 3.945 12 C -0.147 4.147 13 C -0.052 4.052 14 N -0.299 5.299 15 C 0.021 3.979 16 C 0.016 3.984 17 C -0.590 4.590 18 H 0.080 0.920 19 C -0.199 4.199 20 N -0.567 5.567 21 Si 0.794 3.206 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.206 1.206 25 C 0.286 3.714 26 O -0.479 6.479 27 H 0.150 0.850 28 H 0.103 0.897 29 H 0.164 0.836 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.251 0.749 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.019 0.981 46 H -0.019 1.019 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.379 -24.239 5.714 27.811 hybrid contribution -1.390 0.619 0.274 1.546 sum 10.990 -23.620 5.988 26.731 Atomic orbital electron populations 1.24230 0.95932 1.03144 0.96100 1.22935 0.96124 0.96867 1.03694 1.20650 0.90878 0.96984 0.88178 1.44824 1.37964 1.15729 1.30775 1.21896 0.81684 0.89797 0.86641 1.94420 1.81943 1.25580 1.51989 1.47163 1.32256 1.25751 1.21554 1.23141 1.01109 0.92324 0.88504 1.22888 0.93167 0.93789 1.04474 1.22742 1.01427 0.98258 0.92785 1.21337 0.88166 0.84767 1.00262 1.22914 0.98450 0.99080 0.94272 1.23244 0.94818 0.92767 0.94370 1.48231 1.53247 1.12900 1.15527 1.21270 0.96855 0.80614 0.99173 1.18870 0.91133 0.94364 0.94073 1.21730 1.02634 0.93397 1.41224 0.91972 1.26063 0.96644 1.02131 0.95045 1.70243 1.10195 1.33279 1.42951 0.85327 0.78279 0.78961 0.77997 1.18160 1.19894 1.20574 1.21170 0.79816 0.88306 0.82074 1.90599 1.45145 1.76095 1.36019 0.84973 0.89724 0.83576 0.93041 0.89783 0.74898 0.91073 0.86603 0.86366 0.87131 0.85650 0.91347 0.85668 0.87912 0.91029 0.87357 0.93477 0.90319 0.98118 1.01886 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 14.32 67.78 0.97 -1.47 16 2 C -0.18 -2.74 9.63 25.65 0.25 -2.50 16 3 C 0.16 3.82 5.57 85.63 0.48 4.30 16 4 N -0.66 -14.90 5.51 -353.91 -1.95 -16.85 16 5 C 0.56 17.35 7.54 179.05 1.35 18.71 16 6 S -0.67 -30.24 18.98 -56.49 -1.07 -31.31 16 7 N -0.56 -13.92 2.85 -658.13 -1.88 -15.80 16 8 C 0.07 0.99 6.75 86.84 0.59 1.58 16 9 C -0.11 -0.85 7.11 32.17 0.23 -0.62 16 10 C -0.11 -1.93 6.06 31.70 0.19 -1.73 16 11 C 0.14 3.87 0.85 3.36 0.00 3.87 16 12 C -0.11 -2.42 5.99 31.46 0.19 -2.23 16 13 C 0.07 2.47 6.18 86.87 0.54 3.01 16 14 N -0.57 -24.92 1.94 -818.16 -1.59 -26.51 16 15 C 0.14 7.36 5.88 86.38 0.51 7.87 16 16 C 0.05 3.41 4.30 29.85 0.13 3.53 16 17 C -0.55 -35.70 9.11 25.60 0.23 -35.47 16 18 H 0.06 3.80 7.74 -2.91 -0.02 3.78 16 19 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 20 N -0.93 -63.47 13.29 21.45 0.28 -63.19 16 21 Si 0.97 48.86 29.54 68.60 2.03 50.88 16 22 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 25 C 0.50 21.16 6.04 87.62 0.53 21.69 16 26 O -0.60 -30.95 17.07 -3.03 -0.05 -31.00 16 27 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 28 H 0.08 1.68 7.84 -2.91 -0.02 1.66 16 29 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.05 1.71 7.64 -2.39 -0.02 1.69 16 31 H 0.08 2.24 7.99 -2.39 -0.02 2.22 16 32 H 0.41 5.76 6.85 -92.71 -0.64 5.12 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.12 0.71 7.05 -2.38 -0.02 0.69 16 35 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.13 1.34 7.39 -2.39 -0.02 1.32 16 38 H 0.07 1.54 7.51 -2.39 -0.02 1.53 16 39 H 0.13 1.83 7.45 -2.39 -0.02 1.81 16 40 H 0.10 1.96 8.07 -2.39 -0.02 1.94 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.11 4.44 4.05 -23.60 -0.10 4.34 16 43 H 0.05 2.51 7.94 -2.39 -0.02 2.49 16 44 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 45 H 0.00 0.04 7.10 -2.38 -0.02 0.02 16 46 H -0.04 -2.77 8.14 -2.39 -0.02 -2.79 16 47 H 0.26 16.57 8.31 -92.70 -0.77 15.80 16 Total: -1.00 -100.60 379.20 2.66 -97.94 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.25 Total: 14.89 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.64 Total: 20.94 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.13 Total: -122.34 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.05 Total: -31.00 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.88 kcal Atomic # 16 Polarization: -30.24 SS G_CDS: -1.07 Total: -31.31 kcal Total: -100.60 2.66 -97.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275739581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.123 kcal (2) G-P(sol) polarization free energy of solvation -100.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds