Wall clock time and date at job start Tue Mar 31 2020 21:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47513 * 2 1 4 4 O 1.21279 * 119.99605 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00343 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00130 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47117 * 179.97438 * 6 5 3 8 8 C 1.38227 * 120.01020 * 105.00362 * 7 6 5 9 9 C 1.38219 * 120.02402 * 180.30126 * 8 7 6 10 10 C 1.38271 * 120.05287 * 359.44048 * 9 8 7 11 11 C 1.50698 * 119.99018 * 180.27975 * 10 9 8 12 12 N 1.46897 * 109.47305 * 270.27762 * 11 10 9 13 13 C 1.46893 * 111.00145 * 179.97438 * 12 11 10 14 14 C 1.50708 * 109.47272 * 180.02562 * 13 12 11 15 15 O 1.21294 * 119.99718 * 0.02562 * 14 13 12 16 16 N 1.34769 * 119.99850 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99863 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99960 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00353 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99598 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47102 * 89.99970 * 21 19 17 23 23 H 1.48505 * 109.47255 * 210.00150 * 21 19 17 24 24 H 1.48503 * 109.47458 * 329.99894 * 21 19 17 25 25 C 1.38173 * 120.02098 * 0.55595 * 10 9 8 26 26 C 1.38435 * 120.01579 * 285.02327 * 7 6 5 27 27 F 1.35097 * 120.02386 * 359.97438 * 26 7 6 28 28 H 1.09002 * 109.46874 * 300.00015 * 1 2 3 29 29 H 1.09001 * 109.47307 * 59.99593 * 1 2 3 30 30 H 1.08996 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46874 * 239.99985 * 2 1 3 32 32 H 1.09001 * 109.47307 * 120.00407 * 2 1 3 33 33 H 0.96998 * 120.00312 * 359.97438 * 5 3 2 34 34 H 1.09002 * 109.47174 * 59.99957 * 6 5 3 35 35 H 1.09001 * 109.47268 * 300.00220 * 6 5 3 36 36 H 1.08002 * 119.98464 * 0.02562 * 8 7 6 37 37 H 1.08000 * 119.97200 * 179.72235 * 9 8 7 38 38 H 1.09004 * 109.46551 * 30.27818 * 11 10 9 39 39 H 1.09000 * 109.47350 * 150.27737 * 11 10 9 40 40 H 1.00906 * 110.99703 * 56.04346 * 12 11 10 41 41 H 1.09002 * 109.47023 * 299.99765 * 13 12 11 42 42 H 1.09004 * 109.47520 * 59.99927 * 13 12 11 43 43 H 0.96998 * 120.00821 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99329 * 180.02562 * 20 19 17 45 45 H 1.08004 * 120.01046 * 179.74457 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8458 3.0483 0.0000 7 6 5.3528 3.0482 -0.0001 8 6 6.0441 3.3586 -1.1562 9 6 7.4262 3.3525 -1.1582 10 6 8.1191 3.0474 -0.0012 11 6 9.6261 3.0474 -0.0034 12 7 10.1153 1.7099 -0.3635 13 6 11.5837 1.6722 -0.3764 14 6 12.0474 0.2877 -0.7497 15 8 11.2346 -0.5819 -0.9826 16 7 13.3653 0.0159 -0.8248 17 6 13.7872 -1.2434 -1.1649 18 1 13.0634 -2.0178 -1.3722 19 6 15.1459 -1.5236 -1.2429 20 7 16.0265 -0.5813 -0.9911 21 14 15.7207 -3.2396 -1.7055 22 1 15.8704 -3.3307 -3.1801 23 1 17.0280 -3.5154 -1.0572 24 1 14.7206 -4.2371 -1.2470 25 6 7.4302 2.7369 1.1556 26 6 6.0454 2.7370 1.1575 27 9 5.3708 2.4336 2.2879 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9878 0.9298 -0.0005 34 1 3.4829 3.5616 0.8905 35 1 3.4820 3.5627 -0.8894 36 1 5.5039 3.6015 -2.0593 37 1 7.9655 3.5908 -2.0631 38 1 9.9883 3.7746 -0.7302 39 1 9.9909 3.3127 0.9888 40 1 9.7384 1.4140 -1.2515 41 1 11.9591 2.3898 -1.1060 42 1 11.9625 1.9282 0.6131 43 1 14.0154 0.7114 -0.6390 44 1 16.9750 -0.7768 -1.0459 45 1 7.9716 2.4946 2.0582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279703462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:29 Heat of formation + Delta-G solvation = -104.291341 kcal Electronic energy + Delta-G solvation = -27321.984859 eV Core-core repulsion = 23060.236929 eV Total energy + Delta-G solvation = -4261.747930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.13217 -40.18646 -39.47591 -38.29136 -36.10793 -34.89115 -33.88583 -33.16342 -31.89311 -31.23819 -30.80131 -28.48015 -26.42755 -24.91434 -23.93811 -23.20253 -22.99689 -21.21840 -20.62995 -19.34899 -17.98503 -17.74236 -17.25040 -17.02628 -16.51469 -16.16320 -15.93957 -15.80501 -15.51569 -15.27469 -14.68905 -14.51625 -14.27433 -14.18887 -14.07788 -13.74255 -13.65225 -13.51666 -13.07621 -12.88024 -12.65806 -12.39916 -12.28023 -12.08448 -11.93844 -11.84328 -11.57068 -11.54625 -11.50124 -11.17325 -11.06970 -10.42312 -10.26128 -10.23822 -9.54889 -9.44728 -9.20626 -8.93999 -8.54451 -8.15152 -8.00411 -6.45570 -3.86506 0.72049 0.94300 2.35161 2.84717 3.15024 3.24108 3.29718 3.34458 3.85958 3.91435 4.09076 4.14812 4.36024 4.38925 4.43996 4.64842 4.73529 4.74663 4.80334 4.99256 5.05476 5.15463 5.20545 5.23344 5.28985 5.32461 5.43234 5.48063 5.59235 5.60890 5.70981 5.74223 5.85452 5.86422 5.90209 5.97471 6.06748 6.19765 6.25134 6.58573 7.05567 7.15138 7.51574 7.52318 7.90410 8.02055 8.56796 9.13906 9.49804 10.00966 10.72048 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.001796 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.439222 B =15588.253981 C =16690.975684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.512 3.488 4 O -0.544 6.544 5 N -0.727 5.727 6 C 0.166 3.834 7 C -0.151 4.151 8 C -0.072 4.072 9 C -0.123 4.123 10 C -0.037 4.037 11 C 0.093 3.907 12 N -0.663 5.663 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.130 4.130 26 C 0.113 3.887 27 F -0.136 7.136 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.404 0.596 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.351 0.649 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 9.451 1.639 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.299 3.701 4 O -0.421 6.421 5 N -0.380 5.380 6 C 0.043 3.957 7 C -0.152 4.152 8 C -0.091 4.091 9 C -0.142 4.142 10 C -0.037 4.037 11 C -0.036 4.036 12 N -0.296 5.296 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.150 4.150 26 C 0.093 3.907 27 F -0.114 7.114 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.238 0.762 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.171 0.829 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.266 9.266 2.170 24.214 hybrid contribution 1.416 -0.289 -0.660 1.589 sum -20.849 8.977 1.510 22.750 Atomic orbital electron populations 1.21526 0.92934 1.01662 1.03306 1.21648 0.98716 0.93552 1.04630 1.20842 0.81796 0.92045 0.75399 1.90701 1.55272 1.46636 1.49454 1.46126 1.07378 1.08589 1.75872 1.20035 0.88400 0.83897 1.03374 1.19844 0.95432 1.06448 0.93504 1.20910 0.94023 0.97456 0.96698 1.21162 0.94003 1.00899 0.98146 1.19732 0.95850 0.95692 0.92474 1.20972 0.89478 0.91059 1.02111 1.60128 1.07272 1.22883 1.39288 1.21703 0.88053 0.96776 1.01724 1.19766 0.83407 0.89396 0.84916 1.90529 1.53215 1.48049 1.54953 1.41856 1.04996 1.12559 1.60497 1.19706 0.91632 0.88301 1.43345 0.87903 1.25267 0.95603 0.99621 0.97427 1.69611 1.02183 1.33228 1.49204 0.85851 0.78038 0.81821 0.78543 1.20417 1.20897 1.19390 1.21069 0.91724 1.01821 1.00339 1.17534 0.90031 1.00904 0.82228 1.91512 1.80293 1.90511 1.49091 0.92011 0.92008 0.91991 0.88741 0.88741 0.76162 0.90442 0.90155 0.84830 0.85108 0.93912 0.89752 0.82913 0.93663 0.89407 0.77438 0.91844 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.15 -0.95 6.42 -27.88 -0.18 -1.13 16 3 C 0.51 4.98 7.83 -10.99 -0.09 4.89 16 4 O -0.54 -7.31 15.98 5.56 0.09 -7.22 16 5 N -0.73 -6.20 5.55 -61.47 -0.34 -6.54 16 6 C 0.17 1.48 5.49 -5.19 -0.03 1.45 16 7 C -0.15 -1.36 5.25 -104.55 -0.55 -1.90 16 8 C -0.07 -0.58 9.67 -39.59 -0.38 -0.97 16 9 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 10 C -0.04 -0.38 5.39 -104.63 -0.56 -0.94 16 11 C 0.09 1.01 5.81 -4.98 -0.03 0.98 16 12 N -0.66 -9.90 6.12 -116.34 -0.71 -10.61 16 13 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 14 C 0.44 10.06 7.82 -10.98 -0.09 9.97 16 15 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 16 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 21 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 C -0.13 -1.38 9.68 -39.52 -0.38 -1.76 16 26 C 0.11 1.17 7.25 -39.42 -0.29 0.89 16 27 F -0.14 -1.54 16.76 2.25 0.04 -1.50 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 2.89 8.46 -40.82 -0.35 2.55 16 34 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.08 0.68 7.95 -51.93 -0.41 0.26 16 36 H 0.13 0.80 8.00 -52.49 -0.42 0.38 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.35 5.46 8.42 -39.29 -0.33 5.13 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 393.72 15.07 5.93 5.93 Total: -1.00 -33.28 393.72 -8.55 -41.83 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -6.40 Total: 12.83 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -2.89 Total: 2.30 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.39 Total: -54.49 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.18 Total: -22.62 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.28 -8.55 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279703462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.462 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds