Wall clock time and date at job start Tue Mar 31 2020 21:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47513 * 2 1 4 4 O 1.21279 * 119.99605 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00343 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00130 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47117 * 179.97438 * 6 5 3 8 8 C 1.38227 * 120.01020 * 105.00362 * 7 6 5 9 9 C 1.38219 * 120.02402 * 180.30126 * 8 7 6 10 10 C 1.38271 * 120.05287 * 359.44048 * 9 8 7 11 11 C 1.50698 * 119.99018 * 180.27975 * 10 9 8 12 12 N 1.46897 * 109.47305 * 270.27762 * 11 10 9 13 13 C 1.46893 * 111.00145 * 179.97438 * 12 11 10 14 14 C 1.50708 * 109.47272 * 180.02562 * 13 12 11 15 15 O 1.21294 * 119.99718 * 0.02562 * 14 13 12 16 16 N 1.34769 * 119.99850 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99863 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99960 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00353 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99598 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47102 * 89.99970 * 21 19 17 23 23 H 1.48505 * 109.47255 * 210.00150 * 21 19 17 24 24 H 1.48503 * 109.47458 * 329.99894 * 21 19 17 25 25 C 1.38173 * 120.02098 * 0.55595 * 10 9 8 26 26 C 1.38435 * 120.01579 * 285.02327 * 7 6 5 27 27 F 1.35097 * 120.02386 * 359.97438 * 26 7 6 28 28 H 1.09002 * 109.46874 * 300.00015 * 1 2 3 29 29 H 1.09001 * 109.47307 * 59.99593 * 1 2 3 30 30 H 1.08996 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46874 * 239.99985 * 2 1 3 32 32 H 1.09001 * 109.47307 * 120.00407 * 2 1 3 33 33 H 0.96998 * 120.00312 * 359.97438 * 5 3 2 34 34 H 1.09002 * 109.47174 * 59.99957 * 6 5 3 35 35 H 1.09001 * 109.47268 * 300.00220 * 6 5 3 36 36 H 1.08002 * 119.98464 * 0.02562 * 8 7 6 37 37 H 1.08000 * 119.97200 * 179.72235 * 9 8 7 38 38 H 1.09004 * 109.46551 * 30.27818 * 11 10 9 39 39 H 1.09000 * 109.47350 * 150.27737 * 11 10 9 40 40 H 1.00906 * 110.99703 * 56.04346 * 12 11 10 41 41 H 1.09002 * 109.47023 * 299.99765 * 13 12 11 42 42 H 1.09004 * 109.47520 * 59.99927 * 13 12 11 43 43 H 0.96998 * 120.00821 * 359.97438 * 16 14 13 44 44 H 0.97001 * 119.99329 * 180.02562 * 20 19 17 45 45 H 1.08004 * 120.01046 * 179.74457 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8458 3.0483 0.0000 7 6 5.3528 3.0482 -0.0001 8 6 6.0441 3.3586 -1.1562 9 6 7.4262 3.3525 -1.1582 10 6 8.1191 3.0474 -0.0012 11 6 9.6261 3.0474 -0.0034 12 7 10.1153 1.7099 -0.3635 13 6 11.5837 1.6722 -0.3764 14 6 12.0474 0.2877 -0.7497 15 8 11.2346 -0.5819 -0.9826 16 7 13.3653 0.0159 -0.8248 17 6 13.7872 -1.2434 -1.1649 18 1 13.0634 -2.0178 -1.3722 19 6 15.1459 -1.5236 -1.2429 20 7 16.0265 -0.5813 -0.9911 21 14 15.7207 -3.2396 -1.7055 22 1 15.8704 -3.3307 -3.1801 23 1 17.0280 -3.5154 -1.0572 24 1 14.7206 -4.2371 -1.2470 25 6 7.4302 2.7369 1.1556 26 6 6.0454 2.7370 1.1575 27 9 5.3708 2.4336 2.2879 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9878 0.9298 -0.0005 34 1 3.4829 3.5616 0.8905 35 1 3.4820 3.5627 -0.8894 36 1 5.5039 3.6015 -2.0593 37 1 7.9655 3.5908 -2.0631 38 1 9.9883 3.7746 -0.7302 39 1 9.9909 3.3127 0.9888 40 1 9.7384 1.4140 -1.2515 41 1 11.9591 2.3898 -1.1060 42 1 11.9625 1.9282 0.6131 43 1 14.0154 0.7114 -0.6390 44 1 16.9750 -0.7768 -1.0459 45 1 7.9716 2.4946 2.0582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279703462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:28 Heat of formation + Delta-G solvation = -128.390938 kcal Electronic energy + Delta-G solvation = -27323.029895 eV Core-core repulsion = 23060.236929 eV Total energy + Delta-G solvation = -4262.792967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.96502 -40.94988 -40.34580 -39.97052 -37.12518 -36.04940 -35.60333 -33.80450 -33.27553 -32.66908 -31.54213 -29.52903 -27.69148 -26.21294 -24.97571 -24.01717 -23.84121 -21.99605 -21.35058 -21.09432 -19.91254 -18.54041 -18.19033 -17.81993 -17.55751 -17.26784 -16.91141 -16.62773 -16.57581 -16.39151 -16.13110 -16.00421 -15.33730 -15.17833 -14.89812 -14.89282 -14.70754 -14.61538 -14.13521 -13.80399 -13.63453 -13.49296 -13.21540 -13.13947 -13.00215 -12.88516 -12.74948 -12.65076 -12.52846 -12.40799 -12.12152 -12.04377 -11.94330 -11.49652 -11.04555 -10.34826 -10.20874 -10.00499 -9.94926 -9.70863 -9.29976 -8.45916 -5.94391 -0.02800 0.21378 1.38708 1.42912 1.55267 1.60779 2.06868 2.13970 2.30327 2.60206 3.04993 3.19237 3.21993 3.42308 3.60693 3.66624 3.80849 3.86751 4.09031 4.21469 4.25407 4.26229 4.34110 4.45384 4.49029 4.51753 4.56929 4.59099 4.70524 4.75423 4.87901 4.99190 5.03606 5.05115 5.11989 5.23984 5.30575 5.39041 5.41992 5.50041 5.82751 5.88690 6.08806 6.37986 6.46301 6.61239 7.13846 7.18399 7.57853 8.13137 8.71284 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.001796 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.439222 B =15588.253981 C =16690.975684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.507 3.493 4 O -0.587 6.587 5 N -0.721 5.721 6 C 0.167 3.833 7 C -0.144 4.144 8 C -0.067 4.067 9 C -0.120 4.120 10 C -0.047 4.047 11 C 0.097 3.903 12 N -0.679 5.679 13 C 0.065 3.935 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.141 4.141 26 C 0.097 3.903 27 F -0.146 7.146 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.412 0.588 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.346 0.654 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.002 9.657 0.818 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.296 3.704 4 O -0.467 6.467 5 N -0.373 5.373 6 C 0.044 3.956 7 C -0.146 4.146 8 C -0.085 4.085 9 C -0.138 4.138 10 C -0.048 4.048 11 C -0.031 4.031 12 N -0.312 5.312 13 C -0.067 4.067 14 C 0.225 3.775 15 O -0.511 6.511 16 N -0.210 5.210 17 C -0.464 4.464 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.160 4.160 26 C 0.077 3.923 27 F -0.125 7.125 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.248 0.752 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.165 0.835 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.945 9.493 1.362 23.949 hybrid contribution 1.263 -0.307 -0.396 1.359 sum -20.682 9.186 0.965 22.651 Atomic orbital electron populations 1.21530 0.93352 1.02605 1.01936 1.21712 0.98295 0.91562 1.06473 1.21457 0.81654 0.92980 0.74343 1.90680 1.56286 1.48167 1.51597 1.46116 1.07353 1.08747 1.75065 1.19991 0.88394 0.84160 1.03045 1.19875 0.95294 1.05978 0.93419 1.21190 0.93962 0.96285 0.97107 1.21417 0.94349 0.99794 0.98263 1.19744 0.95598 0.96543 0.92870 1.21012 0.89792 0.89321 1.03006 1.60098 1.06137 1.25823 1.39149 1.21554 0.89301 0.92618 1.03240 1.20915 0.82341 0.91556 0.82734 1.90497 1.54095 1.50249 1.56241 1.41928 1.05981 1.11934 1.61190 1.19659 0.91941 0.89270 1.45486 0.90356 1.26015 0.95198 1.03190 0.96825 1.69667 1.02545 1.34637 1.49165 0.84945 0.77630 0.77324 0.78553 1.19601 1.19642 1.19869 1.21132 0.91913 1.02336 1.00667 1.17689 0.90162 1.01982 0.82425 1.91483 1.80469 1.90768 1.49743 0.93558 0.93252 0.89812 0.86532 0.87004 0.75233 0.91886 0.89431 0.82337 0.83175 0.91710 0.89075 0.83501 0.90935 0.87590 0.76907 0.91330 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.20 71.98 0.66 -1.12 16 2 C -0.14 -1.63 6.42 29.85 0.19 -1.44 16 3 C 0.51 9.60 7.83 87.66 0.69 10.29 16 4 O -0.59 -16.03 15.98 -3.03 -0.05 -16.08 16 5 N -0.72 -11.70 5.55 -466.79 -2.59 -14.29 16 6 C 0.17 2.87 5.49 85.63 0.47 3.34 16 7 C -0.14 -2.42 5.25 -19.82 -0.10 -2.52 16 8 C -0.07 -0.92 9.67 22.26 0.22 -0.71 16 9 C -0.12 -1.80 9.70 22.27 0.22 -1.58 16 10 C -0.05 -0.87 5.39 -19.87 -0.11 -0.98 16 11 C 0.10 1.86 5.81 85.56 0.50 2.36 16 12 N -0.68 -19.13 6.12 -521.98 -3.19 -22.32 16 13 C 0.06 2.02 6.17 85.56 0.53 2.55 16 14 C 0.44 19.93 7.82 87.66 0.69 20.61 16 15 O -0.62 -33.62 15.78 -3.07 -0.05 -33.67 16 16 N -0.57 -28.50 5.29 -306.98 -1.62 -30.12 16 17 C -0.33 -18.62 9.68 84.04 0.81 -17.80 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 20 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 21 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 C -0.14 -2.89 9.68 22.31 0.22 -2.67 16 26 C 0.10 1.97 7.25 22.37 0.16 2.13 16 27 F -0.15 -3.33 16.76 44.97 0.75 -2.58 16 28 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.41 5.39 8.46 -92.71 -0.78 4.61 16 34 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 35 H 0.09 1.38 7.95 -2.39 -0.02 1.36 16 36 H 0.16 1.39 8.00 -2.91 -0.02 1.37 16 37 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.06 1.00 8.09 -2.38 -0.02 0.98 16 39 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 40 H 0.35 10.28 8.42 -89.69 -0.76 9.53 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 43 H 0.40 18.64 7.90 -92.71 -0.73 17.90 16 44 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 45 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -73.25 393.72 -0.06 -73.31 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -1.23 Total: 37.61 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.60 Total: 12.26 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -7.12 Total: -115.08 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.10 Total: -49.75 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.75 Total: -2.58 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.25 -0.06 -73.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279703462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.080 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds