Wall clock time and date at job start Tue Mar 31 2020 21:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47060 * 2 1 4 4 O 1.21286 * 119.99639 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00174 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99800 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.46817 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00620 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99786 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00061 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.38221 * 120.01073 * 260.01872 * 11 10 9 13 13 C 1.38220 * 120.02576 * 179.72487 * 12 11 10 14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11 15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12 16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12 26 26 C 1.38441 * 120.01389 * 80.00236 * 11 10 9 27 27 F 1.35100 * 120.02602 * 359.97438 * 26 11 10 28 28 H 1.09004 * 109.47521 * 60.00204 * 1 2 3 29 29 H 1.09005 * 109.46669 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47476 * 299.99417 * 1 2 3 31 31 H 1.09000 * 109.47476 * 240.00583 * 2 1 3 32 32 H 1.08996 * 109.47749 * 120.00100 * 2 1 3 33 33 H 0.96992 * 119.99753 * 0.02562 * 5 3 2 34 34 H 1.08991 * 109.47396 * 60.00304 * 6 5 3 35 35 H 1.09002 * 109.47289 * 299.99896 * 6 5 3 36 36 H 0.97003 * 120.00316 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47450 * 60.00120 * 10 9 7 38 38 H 1.09004 * 109.47141 * 299.99581 * 10 9 7 39 39 H 1.07997 * 119.98840 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.98077 * 180.25523 * 13 12 11 41 41 H 1.09004 * 109.47210 * 149.71995 * 15 14 13 42 42 H 1.08994 * 109.47121 * 29.71965 * 15 14 13 43 43 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 44 44 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.01636 * 180.23671 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 6 5.3526 3.0485 0.0010 8 8 5.9591 1.9983 0.0009 9 7 6.0264 4.2158 0.0019 10 6 7.4913 4.2159 0.0024 11 6 7.9936 5.6367 0.0041 12 6 8.4199 6.2207 -1.1739 13 6 8.8753 7.5257 -1.1737 14 6 8.9149 8.2451 0.0066 15 6 9.4165 9.6661 0.0061 16 7 10.8617 9.6739 0.2458 17 6 11.5432 10.8611 0.2831 18 1 11.0145 11.7919 0.1404 19 6 12.9135 10.8681 0.5045 20 7 13.5579 9.7336 0.6779 21 14 13.8430 12.4876 0.5562 22 1 13.8661 13.0009 1.9495 23 1 15.2348 12.2748 0.0840 24 1 13.1672 13.4745 -0.3238 25 6 8.4892 7.6634 1.1854 26 6 8.0278 6.3577 1.1855 27 9 7.6105 5.7882 2.3373 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9876 0.9300 0.0005 34 1 3.4820 3.5620 0.8910 35 1 3.4825 3.5625 -0.8889 36 1 5.5414 5.0558 0.0024 37 1 7.8550 3.7027 -0.8878 38 1 7.8545 3.7015 0.8922 39 1 8.3935 5.6584 -2.0956 40 1 9.2044 7.9826 -2.0952 41 1 8.9147 10.2289 0.7933 42 1 9.2058 10.1254 -0.9597 43 1 11.3367 8.8378 0.3736 44 1 14.5154 9.7385 0.8330 45 1 8.5166 8.2267 2.1065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279703577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:37 Heat of formation + Delta-G solvation = -91.902135 kcal Electronic energy + Delta-G solvation = -27251.934364 eV Core-core repulsion = 22990.723671 eV Total energy + Delta-G solvation = -4261.210693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.89349 -40.61911 -39.70200 -39.10059 -35.84632 -34.84583 -34.48382 -33.23214 -32.30951 -30.63332 -30.42372 -28.83182 -26.88113 -24.76937 -24.01416 -22.88282 -22.50239 -21.03881 -20.84669 -20.76626 -18.34198 -17.56021 -17.10810 -16.74788 -16.72589 -16.55035 -16.37962 -15.84168 -15.58261 -15.50751 -15.10875 -14.70567 -14.32609 -14.17757 -14.08317 -13.56444 -13.52886 -13.40449 -13.28584 -13.24949 -12.74148 -12.65092 -12.34399 -12.17859 -12.10875 -11.90695 -11.59948 -11.49304 -11.13203 -10.87197 -10.72550 -10.46513 -10.32826 -10.14290 -9.85745 -9.64882 -9.46991 -8.98709 -8.87800 -8.59142 -7.04252 -5.84285 -3.15214 1.03362 1.26405 2.11844 2.23749 2.43482 3.06466 3.39128 3.44053 3.46045 3.64015 4.18254 4.22797 4.32124 4.41285 4.54740 4.64140 4.64197 4.69391 4.86015 4.89619 5.01486 5.11360 5.12351 5.37871 5.38437 5.42075 5.48025 5.50161 5.50449 5.76667 5.86441 5.88246 5.93225 6.00396 6.04724 6.09103 6.29791 6.32468 6.44440 6.84784 6.93040 7.01114 7.05305 7.61727 7.69361 7.78495 8.32787 9.44790 9.98367 10.33856 11.37947 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.038012 B = 0.001593 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.424566 B =17574.149330 C =17690.514715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.542 6.542 5 N -0.721 5.721 6 C 0.099 3.901 7 C 0.510 3.490 8 O -0.539 6.539 9 N -0.717 5.717 10 C 0.169 3.831 11 C -0.161 4.161 12 C -0.074 4.074 13 C -0.115 4.115 14 C -0.034 4.034 15 C 0.183 3.817 16 N -0.726 5.726 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.139 4.139 26 C 0.111 3.889 27 F -0.139 7.139 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.413 0.587 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.406 0.594 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 -17.961 -3.203 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.419 6.419 5 N -0.377 5.377 6 C -0.028 4.028 7 C 0.295 3.705 8 O -0.417 6.417 9 N -0.369 5.369 10 C 0.046 3.954 11 C -0.162 4.162 12 C -0.093 4.093 13 C -0.134 4.134 14 C -0.035 4.035 15 C 0.056 3.944 16 N -0.371 5.371 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.159 4.159 26 C 0.092 3.908 27 F -0.118 7.118 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.241 0.759 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.220 -17.893 -3.164 28.703 hybrid contribution 1.015 0.673 0.375 1.274 sum -21.205 -17.220 -2.789 27.458 Atomic orbital electron populations 1.21539 0.92806 1.01739 1.03434 1.21622 0.98733 0.93243 1.04686 1.20860 0.81466 0.92234 0.75438 1.90722 1.55277 1.46560 1.49293 1.45778 1.07773 1.08128 1.75998 1.21049 0.90843 0.85863 1.05089 1.20497 0.89719 0.84072 0.76173 1.90710 1.69909 1.31143 1.49899 1.45998 1.07465 1.08610 1.74781 1.20078 0.78872 0.92782 1.03660 1.19686 1.07271 0.96186 0.93103 1.20910 0.96889 0.94913 0.96573 1.21222 0.99382 0.93989 0.98779 1.20276 0.93697 0.97703 0.91853 1.19743 0.87239 0.88376 0.99000 1.42313 1.00750 1.07068 1.86981 1.19226 0.90367 0.86028 1.42087 0.90954 1.24769 0.96526 0.96987 1.02365 1.69673 1.08437 1.24311 1.55383 0.86161 0.79296 0.82818 0.77707 1.21611 1.21688 1.20660 1.21147 1.01144 0.93497 1.00084 1.17530 0.99933 0.92128 0.81249 1.91488 1.87812 1.84835 1.47633 0.91931 0.91937 0.91915 0.88680 0.88667 0.74950 0.88177 0.88194 0.75948 0.89870 0.90170 0.85077 0.84883 0.95023 0.94827 0.78003 0.93369 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.20 37.16 0.34 -0.43 16 2 C -0.14 -0.73 6.42 -27.88 -0.18 -0.91 16 3 C 0.51 4.32 7.83 -10.98 -0.09 4.24 16 4 O -0.54 -6.54 15.98 5.55 0.09 -6.45 16 5 N -0.72 -5.47 5.53 -61.47 -0.34 -5.81 16 6 C 0.10 0.73 6.15 -5.20 -0.03 0.70 16 7 C 0.51 4.65 7.90 -10.98 -0.09 4.56 16 8 O -0.54 -6.54 15.67 5.56 0.09 -6.45 16 9 N -0.72 -6.05 5.55 -61.47 -0.34 -6.39 16 10 C 0.17 1.70 5.52 -5.20 -0.03 1.68 16 11 C -0.16 -1.84 5.25 -104.55 -0.55 -2.39 16 12 C -0.07 -0.83 9.67 -39.59 -0.38 -1.21 16 13 C -0.12 -1.55 9.70 -39.57 -0.38 -1.93 16 14 C -0.03 -0.54 5.25 -104.63 -0.55 -1.09 16 15 C 0.18 3.45 6.38 -5.19 -0.03 3.42 16 16 N -0.73 -17.73 5.59 -61.09 -0.34 -18.07 16 17 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 21 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 C -0.14 -2.06 9.68 -39.51 -0.38 -2.44 16 26 C 0.11 1.48 7.25 -39.41 -0.29 1.20 16 27 F -0.14 -1.90 16.66 2.25 0.04 -1.87 16 28 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.41 2.85 7.44 -40.82 -0.30 2.54 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 2.73 8.46 -40.82 -0.35 2.38 16 37 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 38 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 39 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 40 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 43 H 0.39 10.09 7.66 -40.82 -0.31 9.77 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -33.67 393.49 -8.46 -42.13 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.40 Total: 8.86 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.88 Total: -1.81 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.30 Total: -57.20 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.18 Total: -12.90 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.67 -8.46 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279703577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.775 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds