Wall clock time and date at job start Tue Mar 31 2020 19:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46497 * 109.46889 * 119.99938 * 2 1 3 5 5 C 1.36937 * 120.00374 * 302.23987 * 4 2 1 6 6 H 1.08009 * 119.99414 * 321.91725 * 5 4 2 7 7 C 1.38806 * 120.00285 * 141.91011 * 5 4 2 8 8 N 1.31621 * 120.00113 * 338.46316 * 7 5 4 9 9 Si 1.86803 * 120.00035 * 158.45681 * 7 5 4 10 10 H 1.48503 * 109.47070 * 90.00374 * 9 7 5 11 11 H 1.48493 * 109.47346 * 210.00425 * 9 7 5 12 12 H 1.48501 * 109.47173 * 330.00432 * 9 7 5 13 13 C 1.46502 * 119.99707 * 122.23853 * 4 2 1 14 14 C 1.53002 * 109.46846 * 90.00171 * 13 4 2 15 15 C 1.53003 * 109.46926 * 179.97438 * 14 13 4 16 16 N 1.46498 * 109.47029 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99882 * 180.27188 * 16 15 14 18 18 O 1.21634 * 119.99740 * 359.72953 * 17 16 15 19 19 C 1.47265 * 120.00202 * 179.72060 * 17 16 15 20 20 N 1.33557 * 123.13820 * 0.03728 * 19 17 16 21 21 C 1.28655 * 115.76639 * 179.97438 * 20 19 17 22 22 S 1.70767 * 110.55851 * 359.97438 * 21 20 19 23 23 C 1.35207 * 123.14174 * 179.72842 * 19 17 16 24 24 C 1.50699 * 125.58721 * 0.02562 * 23 19 17 25 25 C 1.53001 * 117.49861 * 188.74044 * 24 23 19 26 26 C 1.53000 * 117.49717 * 120.08148 * 24 23 19 27 27 H 1.09005 * 109.47017 * 305.40780 * 1 2 3 28 28 H 1.09000 * 109.46957 * 65.40304 * 1 2 3 29 29 H 1.09000 * 109.47720 * 185.40329 * 1 2 3 30 30 H 1.08998 * 109.46980 * 240.00180 * 2 1 3 31 31 H 1.08996 * 109.47079 * 180.43896 * 3 2 1 32 32 H 1.09000 * 109.47041 * 300.43651 * 3 2 1 33 33 H 1.08998 * 109.47432 * 60.43596 * 3 2 1 34 34 H 0.96993 * 119.99821 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47004 * 329.99703 * 13 4 2 36 36 H 1.09002 * 109.47178 * 209.99853 * 13 4 2 37 37 H 1.08998 * 109.46994 * 60.00202 * 14 13 4 38 38 H 1.08995 * 109.46734 * 299.99474 * 14 13 4 39 39 H 1.09003 * 109.47260 * 59.99859 * 15 14 13 40 40 H 1.09002 * 109.47182 * 299.99735 * 15 14 13 41 41 H 0.96999 * 120.00321 * 359.97438 * 16 15 14 42 42 H 1.07998 * 124.72065 * 180.02562 * 21 20 19 43 43 H 1.08999 * 115.55068 * 334.41371 * 24 23 19 44 44 H 1.08999 * 117.49710 * 0.02562 * 25 24 23 45 45 H 1.08990 * 117.49887 * 145.02298 * 25 24 23 46 46 H 1.08999 * 117.49732 * 214.97851 * 26 24 23 47 47 H 1.09002 * 117.50127 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6501 -0.2502 2.4394 6 1 1.5673 0.8090 2.6344 7 6 1.3831 -1.1647 3.4488 8 7 1.0659 -2.4056 3.1456 9 14 1.4741 -0.6344 5.2377 10 1 0.1444 -0.1389 5.6754 11 1 1.8718 -1.7926 6.0777 12 1 2.4785 0.4498 5.3821 13 6 2.9005 -1.8525 1.0623 14 6 4.3580 -1.3872 1.0483 15 6 5.2794 -2.6006 0.9091 16 7 6.6749 -2.1551 0.8951 17 6 7.6691 -3.0570 0.7744 18 8 7.4079 -4.2414 0.6822 19 6 9.0717 -2.6087 0.7541 20 7 9.4295 -1.3256 0.8515 21 6 10.6946 -1.0937 0.8186 22 16 11.5675 -2.5523 0.6548 23 6 10.1177 -3.4579 0.6413 24 6 10.0212 -4.9570 0.5209 25 6 11.3218 -5.7580 0.6089 26 6 10.6068 -5.6040 -0.7358 27 1 -0.3633 0.5955 0.8376 28 1 -0.3633 0.4278 -0.9344 29 1 -0.3634 -1.0231 0.0968 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0079 32 1 1.6703 1.9585 -0.8860 33 1 1.6832 1.9541 0.8938 34 1 0.8797 -3.0448 3.8510 35 1 2.6764 -2.3735 0.1315 36 1 2.7427 -2.5274 1.9035 37 1 4.5820 -0.8662 1.9791 38 1 4.5158 -0.7123 0.2070 39 1 5.0555 -3.1221 -0.0216 40 1 5.1215 -3.2752 1.7506 41 1 6.8833 -1.2106 0.9683 42 1 11.1422 -0.1132 0.8860 43 1 9.1238 -5.4060 0.9466 44 1 12.2472 -5.2007 0.7542 45 1 11.2800 -6.7341 1.0920 46 1 10.0949 -6.4788 -1.1367 47 1 11.0615 -4.9453 -1.4758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317701698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:27 Heat of formation + Delta-G solvation = 42.806941 kcal Electronic energy + Delta-G solvation = -26524.167581 eV Core-core repulsion = 22835.011487 eV Total energy + Delta-G solvation = -3689.156093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.67163 -38.58497 -37.52060 -36.72318 -34.94315 -32.45576 -31.52395 -30.68521 -28.84653 -26.57320 -26.14795 -25.03586 -23.43560 -22.77293 -22.41476 -21.90704 -20.82451 -19.61960 -19.41269 -18.35440 -16.99589 -16.28385 -16.00910 -15.66594 -15.39336 -14.97280 -14.81495 -14.50050 -14.44111 -14.12954 -13.79206 -13.51251 -13.20257 -12.79144 -12.45380 -12.35508 -12.27031 -11.92040 -11.67014 -11.46504 -11.39787 -11.35328 -11.27040 -10.94517 -10.91069 -10.70658 -10.59767 -10.39224 -10.18184 -10.10072 -9.91576 -9.74980 -9.60929 -9.53836 -9.45554 -9.15166 -8.72808 -8.42402 -6.49905 -5.73887 -3.31401 0.24201 0.90028 1.32577 1.84599 3.31049 3.36398 3.39995 3.46087 3.48675 3.62211 3.92267 4.19988 4.49382 4.51644 4.66308 4.82085 4.96228 5.24498 5.27341 5.28251 5.40771 5.52454 5.63701 5.71013 5.74266 5.85596 5.97725 5.98876 6.08607 6.22898 6.36106 6.44732 6.47506 6.48189 6.72763 6.76242 6.78774 6.84868 6.85373 7.12909 7.17458 7.24606 7.38543 7.71325 7.74170 7.88810 8.32594 8.58520 9.25212 9.87882 10.47262 11.26188 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002417 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.189457 B =11583.841477 C =11864.397132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.154 4.154 4 N -0.579 5.579 5 C -0.252 4.252 6 H 0.058 0.942 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.153 3.847 14 C -0.146 4.146 15 C 0.121 3.879 16 N -0.706 5.706 17 C 0.589 3.411 18 O -0.535 6.535 19 C 0.002 3.998 20 N -0.435 5.435 21 C -0.006 4.006 22 S 0.193 5.807 23 C -0.149 4.149 24 C -0.087 4.087 25 C -0.178 4.178 26 C -0.159 4.159 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.253 0.747 35 H 0.024 0.976 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.407 0.593 42 H 0.205 0.795 43 H 0.150 0.850 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.545 -1.443 -7.422 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.204 1.204 13 C 0.026 3.974 14 C -0.186 4.186 15 C -0.003 4.003 16 N -0.355 5.355 17 C 0.372 3.628 18 O -0.413 6.413 19 C -0.132 4.132 20 N -0.148 5.148 21 C -0.306 4.306 22 S 0.450 5.550 23 C -0.273 4.273 24 C -0.107 4.107 25 C -0.216 4.216 26 C -0.197 4.197 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.243 0.757 42 H 0.222 0.778 43 H 0.168 0.832 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 22.898 -2.136 -7.381 24.153 hybrid contribution -0.724 0.723 1.121 1.518 sum 22.174 -1.413 -6.260 23.084 Atomic orbital electron populations 1.22060 0.97895 1.01557 0.98910 1.20410 0.92437 0.91787 0.89836 1.22181 1.00123 0.98999 0.99990 1.43835 1.51746 1.33276 1.01063 1.18870 1.41411 0.91241 0.86675 0.92394 1.25161 0.98574 0.96422 0.98574 1.70002 1.47024 1.04166 1.31600 0.86504 0.77969 0.77762 0.85754 1.21371 1.21577 1.20427 1.20775 0.84921 0.90815 1.00894 1.22505 0.98627 0.95878 1.01606 1.21545 0.78243 0.98541 1.01952 1.46026 1.06616 1.10657 1.72238 1.17020 0.82873 0.85744 0.77166 1.90742 1.83367 1.16145 1.51061 1.20442 0.96096 0.87430 1.09255 1.66971 1.16062 1.18465 1.13339 1.28331 0.92160 1.03938 1.06129 1.82746 1.08899 0.98549 1.64841 1.24821 0.96376 1.00670 1.05431 1.20731 0.99933 0.85893 1.04169 1.23172 0.94996 1.02211 1.01180 1.23085 1.02882 1.03021 0.90742 0.92790 0.95314 0.93008 0.93727 0.93866 0.94625 0.92791 0.93657 0.95706 0.88807 0.91600 0.93187 0.91804 0.91292 0.75736 0.77824 0.83234 0.88730 0.87554 0.87584 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.03 37.16 0.34 -2.64 16 2 C 0.16 3.38 3.36 -67.93 -0.23 3.15 16 3 C -0.15 -2.86 9.20 37.16 0.34 -2.52 16 4 N -0.58 -13.85 2.36 -165.66 -0.39 -14.24 16 5 C -0.25 -6.64 8.23 -15.06 -0.12 -6.77 16 6 H 0.06 1.55 6.95 -52.48 -0.36 1.18 16 7 C 0.01 0.35 4.94 -17.43 -0.09 0.26 16 8 N -0.89 -25.09 11.52 55.49 0.64 -24.45 16 9 Si 0.89 21.47 29.61 -169.99 -5.03 16.44 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.15 3.46 5.27 -4.04 -0.02 3.44 16 14 C -0.15 -2.76 5.65 -26.73 -0.15 -2.92 16 15 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 16 N -0.71 -11.30 5.55 -61.43 -0.34 -11.64 16 17 C 0.59 9.68 7.80 -12.59 -0.10 9.58 16 18 O -0.54 -9.85 14.16 5.25 0.07 -9.77 16 19 C 0.00 0.03 6.70 -84.53 -0.57 -0.54 16 20 N -0.43 -5.43 10.12 -12.36 -0.13 -5.55 16 21 C -0.01 -0.05 12.17 51.43 0.63 0.57 16 22 S 0.19 1.50 21.77 -107.50 -2.34 -0.84 16 23 C -0.15 -1.74 6.04 -35.39 -0.21 -1.95 16 24 C -0.09 -0.96 5.40 -91.77 -0.50 -1.45 16 25 C -0.18 -1.39 10.03 -26.69 -0.27 -1.66 16 26 C -0.16 -1.38 10.24 -26.69 -0.27 -1.65 16 27 H 0.05 1.17 7.80 -51.93 -0.40 0.76 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.88 7.78 -51.93 -0.40 0.48 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 1.06 7.06 -51.93 -0.37 0.70 16 34 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.02 0.54 7.90 -51.93 -0.41 0.13 16 36 H 0.09 2.42 5.56 -51.93 -0.29 2.13 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.41 6.06 7.99 -40.82 -0.33 5.73 16 42 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.15 2.00 6.17 -51.93 -0.32 1.68 16 44 H 0.09 0.63 7.28 -51.93 -0.38 0.25 16 45 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -30.65 396.58 -10.26 -40.91 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.47 Total: 6.18 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.25 Total: -3.00 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.22 Total: -55.88 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.34 Total: -0.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.65 -10.26 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317701698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.715 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds