Wall clock time and date at job start Tue Mar 31 2020 19:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47430 * 2 1 4 4 N 1.46494 * 109.47098 * 120.00308 * 2 1 3 5 5 C 1.36929 * 120.00363 * 294.89796 * 4 2 1 6 6 H 1.08006 * 120.00042 * 37.14695 * 5 4 2 7 7 C 1.38808 * 120.00556 * 217.14347 * 5 4 2 8 8 N 1.31619 * 119.99849 * 21.27737 * 7 5 4 9 9 Si 1.86805 * 120.00410 * 201.27256 * 7 5 4 10 10 H 1.48500 * 109.46629 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46763 * 120.00073 * 9 7 5 12 12 H 1.48495 * 109.47225 * 240.00029 * 9 7 5 13 13 C 1.46506 * 119.99860 * 114.90083 * 4 2 1 14 14 C 1.52996 * 109.46963 * 270.00041 * 13 4 2 15 15 C 1.53007 * 109.47010 * 180.02562 * 14 13 4 16 16 N 1.46493 * 109.47230 * 179.97438 * 15 14 13 17 17 C 1.34774 * 120.00297 * 179.97438 * 16 15 14 18 18 O 1.21692 * 120.00033 * 0.02562 * 17 16 15 19 19 C 1.46684 * 120.00504 * 180.02562 * 17 16 15 20 20 S 1.76212 * 126.12720 * 0.02562 * 19 17 16 21 21 C 1.70949 * 90.31498 * 179.97438 * 20 19 17 22 22 N 1.29437 * 110.39124 * 359.97438 * 21 20 19 23 23 C 1.30940 * 117.36158 * 0.02562 * 22 21 20 24 24 C 1.50701 * 122.90484 * 179.97438 * 23 22 21 25 25 C 1.52996 * 117.49773 * 8.62143 * 24 23 22 26 26 C 1.52999 * 60.00098 * 252.50914 * 25 24 23 27 27 H 1.09001 * 109.46705 * 303.30851 * 1 2 3 28 28 H 1.09005 * 109.47129 * 63.30637 * 1 2 3 29 29 H 1.08996 * 109.47238 * 183.30866 * 1 2 3 30 30 H 1.09008 * 109.47025 * 240.00241 * 2 1 3 31 31 H 1.08998 * 109.47703 * 181.61700 * 3 2 1 32 32 H 1.09002 * 109.47161 * 301.62625 * 3 2 1 33 33 H 1.09003 * 109.46804 * 61.61818 * 3 2 1 34 34 H 0.97001 * 119.99910 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47245 * 150.00037 * 13 4 2 36 36 H 1.09006 * 109.47383 * 30.00214 * 13 4 2 37 37 H 1.08990 * 109.47582 * 60.00325 * 14 13 4 38 38 H 1.08999 * 109.47365 * 299.99589 * 14 13 4 39 39 H 1.08997 * 109.47600 * 59.99409 * 15 14 13 40 40 H 1.09002 * 109.46880 * 299.99542 * 15 14 13 41 41 H 0.97000 * 120.00368 * 359.97438 * 16 15 14 42 42 H 1.08002 * 124.80844 * 179.97438 * 21 20 19 43 43 H 1.08999 * 115.54901 * 154.32527 * 24 23 22 44 44 H 1.09004 * 117.49696 * 0.02562 * 25 24 23 45 45 H 1.09002 * 117.49920 * 145.01568 * 25 24 23 46 46 H 1.08993 * 117.49901 * 252.51321 * 26 25 24 47 47 H 1.09001 * 117.51560 * 107.47772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7759 -0.1652 2.4371 6 1 0.8340 0.3218 2.6428 7 6 2.7404 -0.2584 3.4309 8 7 4.0014 -0.4531 3.1079 9 14 2.2490 -0.1075 5.2268 10 1 0.7825 0.1058 5.3223 11 1 2.6155 -1.3536 5.9466 12 1 2.9582 1.0446 5.8390 13 6 2.7661 -1.9436 1.0645 14 6 1.7929 -3.1237 1.0926 15 6 2.5740 -4.4323 0.9558 16 7 1.6422 -5.5623 0.9834 17 6 2.1079 -6.8226 0.8771 18 8 3.3025 -7.0218 0.7586 19 6 1.1749 -7.9541 0.9041 20 16 -0.5767 -7.8527 1.0674 21 6 -0.6920 -9.5566 0.9909 22 7 0.4832 -10.0826 0.8574 23 6 1.5057 -9.2662 0.8068 24 6 2.9271 -9.7429 0.6542 25 6 3.1460 -11.2271 0.3540 26 6 3.4820 -10.6689 1.7384 27 1 -0.3633 0.5644 0.8589 28 1 -0.3634 0.4617 -0.9182 29 1 -0.3633 -1.0259 0.0593 30 1 1.8933 -0.5138 -0.8901 31 1 3.1297 1.4426 -0.0290 32 1 1.6531 1.9647 -0.8751 33 1 1.7006 1.9478 0.9042 34 1 4.6756 -0.5179 3.8024 35 1 3.4713 -2.0344 1.8907 36 1 3.3108 -1.9442 0.1202 37 1 1.0878 -3.0331 0.2665 38 1 1.2483 -3.1232 2.0368 39 1 3.2789 -4.5228 1.7822 40 1 3.1188 -4.4331 0.0117 41 1 0.6899 -5.4037 1.0781 42 1 -1.6147 -10.1152 1.0460 43 1 3.6157 -9.0304 0.2001 44 1 2.2619 -11.8586 0.2666 45 1 3.9788 -11.4913 -0.2978 46 1 4.5357 -10.5659 1.9973 47 1 2.8190 -10.9330 2.5623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317704845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:20 Heat of formation + Delta-G solvation = 28.699415 kcal Electronic energy + Delta-G solvation = -26506.698401 eV Core-core repulsion = 22816.930560 eV Total energy + Delta-G solvation = -3689.767842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59534 -40.27439 -38.49971 -37.48140 -36.41123 -34.28923 -33.34538 -31.82579 -30.41697 -27.75753 -27.66496 -26.68097 -24.96904 -23.86982 -23.27181 -22.54081 -22.45075 -21.29345 -20.43372 -19.10389 -18.22724 -17.94172 -17.13139 -17.03913 -16.68720 -16.46673 -16.04330 -15.81224 -15.52387 -15.35182 -15.23551 -14.80299 -14.70255 -14.53183 -14.05109 -13.39121 -13.32456 -13.25163 -13.15958 -12.85629 -12.75558 -12.62481 -12.51155 -12.42925 -12.34523 -12.11911 -11.89913 -11.78464 -11.69810 -11.47953 -11.31788 -11.23232 -11.16270 -10.74474 -10.68483 -10.46282 -10.21126 -9.74680 -8.48108 -7.75254 -5.36387 -0.83911 0.13561 0.51366 1.30859 1.44291 1.49398 1.57110 1.97014 1.99802 2.54045 2.94631 3.11558 3.30928 3.56355 3.61461 3.81107 3.93175 4.08994 4.16312 4.20136 4.29194 4.37240 4.44866 4.51442 4.64321 4.72100 4.73557 4.81443 4.83538 4.92008 4.99059 5.01790 5.09026 5.16524 5.18116 5.21994 5.23918 5.26153 5.34997 5.48690 5.64435 5.69965 5.76882 5.91290 6.31377 6.53115 6.54958 7.00184 7.25153 7.96080 8.47951 9.20061 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002550 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.491259 B =10975.739504 C =11402.426420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.593 5.593 5 C -0.242 4.242 6 H 0.056 0.944 7 C -0.038 4.038 8 N -0.917 5.917 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.296 1.296 13 C 0.150 3.850 14 C -0.123 4.123 15 C 0.135 3.865 16 N -0.711 5.711 17 C 0.590 3.410 18 O -0.560 6.560 19 C -0.326 4.326 20 S 0.216 5.784 21 C 0.051 3.949 22 N -0.495 5.495 23 C 0.170 3.830 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.154 4.154 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.247 0.753 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.408 0.592 42 H 0.251 0.749 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.107 0.893 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 -18.516 -6.846 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.196 4.196 4 N -0.314 5.314 5 C -0.372 4.372 6 H 0.074 0.926 7 C -0.235 4.235 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.191 1.191 11 H -0.221 1.221 12 H -0.224 1.224 13 C 0.023 3.977 14 C -0.163 4.163 15 C 0.011 3.989 16 N -0.362 5.362 17 C 0.377 3.623 18 O -0.440 6.440 19 C -0.450 4.450 20 S 0.472 5.528 21 C -0.243 4.243 22 N -0.209 5.209 23 C 0.032 3.968 24 C -0.144 4.144 25 C -0.181 4.181 26 C -0.192 4.192 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.244 0.756 42 H 0.266 0.734 43 H 0.139 0.861 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.500 -18.356 -6.765 22.692 hybrid contribution 0.728 0.214 1.215 1.433 sum -10.772 -18.142 -5.549 21.816 Atomic orbital electron populations 1.22051 0.96549 1.00893 1.00627 1.20669 0.93675 0.92090 0.89003 1.21956 0.99256 0.98116 1.00304 1.44095 1.64427 1.21290 1.01611 1.19056 0.96842 1.33021 0.88313 0.92646 1.25735 0.94572 1.01523 1.01647 1.70119 1.00135 1.53746 1.32196 0.85564 0.78221 0.76550 0.82274 1.19065 1.22131 1.22381 1.20699 0.93372 0.84040 0.99565 1.22157 0.99525 0.92992 1.01639 1.21226 0.91947 0.84450 1.01316 1.45893 1.11482 1.05069 1.73751 1.17010 0.86959 0.82180 0.76200 1.90760 1.16715 1.85047 1.51511 1.25345 0.99255 0.97907 1.22518 1.83808 0.97110 1.08169 1.63674 1.29503 1.00525 0.96005 0.98264 1.66039 0.98483 1.38119 1.18292 1.19855 0.95310 0.86942 0.94721 1.20866 0.90617 0.95224 1.07732 1.23029 1.03935 0.92919 0.98258 1.22960 1.02014 1.01463 0.92760 0.94462 0.91562 0.93318 0.92454 0.95745 0.91622 0.94473 0.94363 0.91994 0.95485 0.91244 0.92805 0.93321 0.91603 0.75621 0.73360 0.86132 0.87594 0.86959 0.87467 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.19 71.98 0.66 -3.99 16 2 C 0.15 5.86 3.37 44.99 0.15 6.01 16 3 C -0.14 -5.33 9.11 71.98 0.66 -4.67 16 4 N -0.59 -27.39 2.37 -678.03 -1.61 -29.00 16 5 C -0.24 -12.42 8.04 84.03 0.68 -11.75 16 6 H 0.06 2.87 7.14 -2.91 -0.02 2.85 16 7 C -0.04 -2.04 4.96 84.86 0.42 -1.62 16 8 N -0.92 -52.62 11.43 21.65 0.25 -52.37 16 9 Si 0.94 43.86 29.60 68.60 2.03 45.89 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 12 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 13 C 0.15 6.63 5.28 86.38 0.46 7.09 16 14 C -0.12 -4.33 5.65 30.60 0.17 -4.15 16 15 C 0.13 4.46 5.67 86.38 0.49 4.95 16 16 N -0.71 -20.16 5.55 -467.08 -2.59 -22.75 16 17 C 0.59 18.25 7.78 86.45 0.67 18.92 16 18 O -0.56 -21.00 14.32 -4.32 -0.06 -21.06 16 19 C -0.33 -8.19 6.48 23.88 0.15 -8.03 16 20 S 0.22 3.26 22.35 -56.49 -1.26 2.00 16 21 C 0.05 0.67 12.22 130.60 1.60 2.27 16 22 N -0.50 -10.16 9.80 -190.40 -1.87 -12.03 16 23 C 0.17 4.26 6.42 42.09 0.27 4.53 16 24 C -0.12 -3.14 5.44 -11.54 -0.06 -3.20 16 25 C -0.14 -2.78 10.08 30.59 0.31 -2.47 16 26 C -0.15 -3.27 10.23 30.59 0.31 -2.95 16 27 H 0.04 1.32 7.32 -2.39 -0.02 1.30 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 2.07 7.77 -2.38 -0.02 2.05 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 1.56 7.50 -2.39 -0.02 1.54 16 34 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.06 3.24 5.48 -2.38 -0.01 3.23 16 36 H 0.03 1.15 7.88 -2.38 -0.02 1.13 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.41 9.42 7.66 -92.71 -0.71 8.71 16 42 H 0.25 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.12 3.61 6.17 -2.39 -0.01 3.59 16 44 H 0.11 1.99 7.74 -2.38 -0.02 1.97 16 45 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -67.41 397.27 2.09 -65.33 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.26 Total: 23.05 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.94 Total: 0.94 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -5.82 Total: -116.15 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.26 Total: 2.00 kcal Total: -67.41 2.09 -65.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317704845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.025 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds