Wall clock time and date at job start Tue Mar 31 2020 19:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46991 * 2 1 4 4 N 1.46493 * 109.47011 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00484 * 89.99767 * 4 3 2 6 6 O 1.21280 * 120.00477 * 175.09756 * 5 4 3 7 7 C 1.50698 * 119.99754 * 355.10756 * 5 4 3 8 8 C 1.52999 * 109.47432 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47432 * 180.02562 * 8 7 5 10 10 C 1.33638 * 126.04115 * 89.99627 * 9 8 7 11 11 N 1.31784 * 114.49914 * 179.97438 * 10 9 8 12 12 C 1.29027 * 117.12601 * 0.02562 * 11 10 9 13 13 S 1.70982 * 110.16571 * 359.72457 * 12 11 10 14 14 C 1.46506 * 119.99869 * 269.99722 * 4 3 2 15 15 H 1.09000 * 110.64056 * 179.97438 * 14 4 3 16 16 C 1.55152 * 110.71918 * 56.59157 * 14 4 3 17 17 C 1.54910 * 101.57958 * 277.13882 * 16 14 4 18 18 N 1.47428 * 104.83362 * 322.99019 * 17 16 14 19 19 C 1.36941 * 125.64667 * 204.16533 * 18 17 16 20 20 H 1.08001 * 120.00242 * 335.75551 * 19 18 17 21 21 C 1.38818 * 119.99624 * 155.75334 * 19 18 17 22 22 N 1.31615 * 119.99524 * 157.56061 * 21 19 18 23 23 Si 1.86800 * 120.00174 * 337.55999 * 21 19 18 24 24 H 1.48505 * 109.46958 * 87.03294 * 23 21 19 25 25 H 1.48493 * 109.47153 * 207.03297 * 23 21 19 26 26 H 1.48506 * 109.46999 * 327.03398 * 23 21 19 27 27 C 1.47018 * 108.70339 * 24.12856 * 18 17 16 28 28 H 1.09004 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47409 * 299.99641 * 1 2 3 30 30 H 1.08995 * 109.47470 * 60.00159 * 1 2 3 31 31 H 1.08999 * 109.47103 * 239.99956 * 2 1 3 32 32 H 1.08999 * 109.47013 * 119.99968 * 2 1 3 33 33 H 1.09004 * 109.46689 * 300.00338 * 3 2 1 34 34 H 1.08999 * 109.47233 * 60.00036 * 3 2 1 35 35 H 1.09001 * 109.46837 * 299.99564 * 7 5 4 36 36 H 1.08998 * 109.47616 * 59.99602 * 7 5 4 37 37 H 1.09001 * 109.46754 * 299.99615 * 8 7 5 38 38 H 1.08998 * 109.47044 * 59.99253 * 8 7 5 39 39 H 1.07998 * 122.74805 * 0.02562 * 10 9 8 40 40 H 1.08003 * 124.91747 * 180.02562 * 12 11 10 41 41 H 1.08999 * 111.00962 * 35.21387 * 16 14 4 42 42 H 1.09004 * 111.00595 * 159.06929 * 16 14 4 43 43 H 1.09008 * 110.36865 * 204.15226 * 17 16 14 44 44 H 1.09001 * 110.37015 * 81.83294 * 17 16 14 45 45 H 0.96997 * 119.99733 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.88371 * 239.52512 * 27 18 17 47 47 H 1.08998 * 110.00788 * 118.42587 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.4427 -1.1680 6 8 5.3879 1.5324 -1.1705 7 6 3.4285 1.3315 -2.4705 8 6 4.4213 1.3561 -3.6344 9 6 3.6714 1.2456 -4.9368 10 6 3.2002 2.2646 -5.6617 11 7 2.5776 1.9072 -6.7669 12 6 2.4970 0.6434 -7.0143 13 16 3.2674 -0.2499 -5.7765 14 6 4.2379 1.4424 1.2679 15 1 5.3134 1.4420 1.0902 16 6 3.8208 0.2309 2.1428 17 6 2.5288 0.7615 2.8128 18 7 2.7967 2.1877 3.0728 19 6 2.1856 2.9530 4.0299 20 1 1.2079 2.6786 4.3978 21 6 2.8228 4.0815 4.5274 22 7 2.1180 5.0434 5.0844 23 14 4.6806 4.2349 4.4062 24 1 5.0434 4.8344 3.0969 25 1 5.1781 5.1033 5.5032 26 1 5.2970 2.8888 4.5222 27 6 3.8292 2.6520 2.1348 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.8695 0.3960 -2.4891 36 1 2.7378 2.1694 -2.5648 37 1 4.9800 2.2919 -3.6155 38 1 5.1123 0.5184 -3.5402 39 1 3.3205 3.2964 -5.3665 40 1 2.0170 0.2124 -7.8805 41 1 3.6105 -0.6427 1.5258 42 1 4.5836 0.0063 2.8884 43 1 2.3423 0.2339 3.7483 44 1 1.6792 0.6518 2.1387 45 1 2.5631 5.8321 5.4316 46 1 4.6933 3.0208 2.6875 47 1 3.4289 3.4436 1.5014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317767838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:49 Heat of formation + Delta-G solvation = 44.372522 kcal Electronic energy + Delta-G solvation = -27785.866923 eV Core-core repulsion = 24096.778718 eV Total energy + Delta-G solvation = -3689.088205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44714 -39.86531 -38.01197 -35.37343 -34.40177 -32.97980 -32.20086 -30.11987 -29.34889 -28.14997 -26.32753 -25.92729 -24.32695 -23.63902 -21.67172 -20.98071 -20.38903 -20.27299 -18.82893 -18.41664 -17.36581 -16.96234 -16.34949 -15.98687 -15.55929 -15.13215 -14.97185 -14.68549 -14.27761 -14.01601 -13.88409 -13.65673 -13.40035 -13.20182 -12.94250 -12.88965 -12.55224 -12.42210 -12.04821 -11.93459 -11.77100 -11.67530 -11.55516 -11.24559 -11.20335 -11.08457 -10.73589 -10.65978 -10.51302 -10.37246 -10.12327 -9.96792 -9.74317 -9.54153 -9.42943 -9.21197 -8.64182 -8.42162 -7.03303 -6.01269 -3.33886 0.38066 1.03271 1.43098 2.52695 2.66317 3.06487 3.33894 3.46542 3.49481 4.03053 4.32918 4.51239 4.68281 4.76681 4.82925 4.92645 4.92898 4.94157 5.02349 5.11869 5.19133 5.25558 5.31716 5.35000 5.39974 5.52135 5.58147 5.68936 5.73735 5.77969 5.85300 5.88183 5.90098 5.93306 6.03505 6.09020 6.20287 6.29715 6.38161 6.50676 6.56541 6.74088 6.85604 7.38039 7.54410 7.71946 8.23962 8.27252 8.79107 9.63952 10.14390 11.15149 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.002891 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.936736 B = 9682.881602 C =10148.185438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.095 3.905 4 N -0.592 5.592 5 C 0.514 3.486 6 O -0.548 6.548 7 C -0.135 4.135 8 C -0.028 4.028 9 C -0.207 4.207 10 C 0.030 3.970 11 N -0.469 5.469 12 C 0.012 3.988 13 S 0.118 5.882 14 C 0.126 3.874 15 H 0.104 0.896 16 C -0.147 4.147 17 C 0.115 3.885 18 N -0.606 5.606 19 C -0.246 4.246 20 H 0.091 0.909 21 C 0.028 3.972 22 N -0.904 5.904 23 Si 0.884 3.116 24 H -0.286 1.286 25 H -0.303 1.303 26 H -0.276 1.276 27 C 0.113 3.887 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.177 0.823 40 H 0.198 0.802 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.264 0.736 46 H 0.033 0.967 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 -13.178 -20.984 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C -0.027 4.027 4 N -0.323 5.323 5 C 0.303 3.697 6 O -0.426 6.426 7 C -0.175 4.175 8 C -0.068 4.068 9 C -0.329 4.329 10 C -0.121 4.121 11 N -0.182 5.182 12 C -0.286 4.286 13 S 0.371 5.629 14 C 0.022 3.978 15 H 0.122 0.878 16 C -0.186 4.186 17 C -0.009 4.009 18 N -0.334 5.334 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.172 4.172 22 N -0.547 5.547 23 Si 0.715 3.285 24 H -0.213 1.213 25 H -0.231 1.231 26 H -0.203 1.203 27 C -0.012 4.012 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.194 0.806 40 H 0.214 0.786 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.115 -13.588 -21.068 25.070 hybrid contribution 1.033 1.104 0.238 1.531 sum 1.148 -12.484 -20.829 24.311 Atomic orbital electron populations 1.21701 0.95088 1.01699 1.02296 1.22223 0.96408 0.97347 1.02785 1.21948 0.78876 0.97217 1.04687 1.47918 1.07024 1.71969 1.05389 1.20526 0.87848 0.76031 0.85328 1.90681 1.14236 1.50274 1.87408 1.21747 0.99161 1.04869 0.91740 1.19803 0.95729 1.05191 0.86094 1.26077 1.08343 0.94816 1.03622 1.21831 0.98657 1.00997 0.90587 1.66328 1.17137 1.16178 1.18569 1.28371 1.04318 0.91950 1.03958 1.84121 1.50605 1.11331 1.16887 1.22099 0.96997 0.96261 0.82393 0.87793 1.23204 0.99952 0.96686 0.98759 1.22128 0.94667 0.86002 0.98142 1.44774 1.46062 1.05412 1.37159 1.18584 0.99226 1.05056 1.14399 0.89185 1.25109 0.97483 0.96539 0.98035 1.69834 1.34930 1.07088 1.42847 0.86907 0.88250 0.77151 0.76151 1.21346 1.23101 1.20257 1.21953 0.93087 0.94712 0.91449 0.92676 0.91881 0.92900 0.92509 0.90022 0.91023 0.87312 0.88672 0.88479 0.88667 0.89611 0.80639 0.78573 0.90997 0.90435 0.93434 0.93721 0.92633 0.94925 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.15 -1.59 5.08 -26.73 -0.14 -1.72 16 3 C 0.10 1.23 4.24 -4.04 -0.02 1.21 16 4 N -0.59 -8.67 2.45 -164.03 -0.40 -9.07 16 5 C 0.51 7.23 7.66 -10.99 -0.08 7.15 16 6 O -0.55 -9.47 15.36 5.56 0.09 -9.38 16 7 C -0.13 -1.34 4.35 -27.88 -0.12 -1.46 16 8 C -0.03 -0.27 5.04 -27.88 -0.14 -0.41 16 9 C -0.21 -1.85 5.85 -35.92 -0.21 -2.06 16 10 C 0.03 0.29 11.25 -19.18 -0.22 0.07 16 11 N -0.47 -4.83 10.54 -15.75 -0.17 -5.00 16 12 C 0.01 0.09 12.23 51.58 0.63 0.72 16 13 S 0.12 0.88 23.22 -107.50 -2.50 -1.62 16 14 C 0.13 2.18 3.58 -66.09 -0.24 1.95 16 15 H 0.10 1.88 7.00 -51.93 -0.36 1.51 16 16 C -0.15 -2.30 6.09 -24.58 -0.15 -2.45 16 17 C 0.12 2.08 5.98 -2.53 -0.02 2.06 16 18 N -0.61 -13.83 2.67 -170.06 -0.45 -14.29 16 19 C -0.25 -6.70 10.54 -15.06 -0.16 -6.86 16 20 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 21 C 0.03 0.80 5.43 -17.43 -0.09 0.71 16 22 N -0.90 -27.45 13.97 55.49 0.78 -26.67 16 23 Si 0.88 22.74 24.50 -169.99 -4.16 18.58 16 24 H -0.29 -7.27 6.89 56.52 0.39 -6.88 16 25 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.28 -6.99 6.99 56.52 0.40 -6.60 16 27 C 0.11 2.44 4.63 -3.06 -0.01 2.43 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 6.95 -51.93 -0.36 0.17 16 32 H 0.08 0.94 4.27 -51.93 -0.22 0.72 16 33 H 0.07 0.78 6.47 -51.93 -0.34 0.45 16 34 H 0.11 1.74 5.28 -51.93 -0.27 1.47 16 35 H 0.09 0.82 6.94 -51.93 -0.36 0.46 16 36 H 0.10 0.88 7.25 -51.93 -0.38 0.50 16 37 H 0.09 0.96 8.10 -51.93 -0.42 0.53 16 38 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.20 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.07 0.96 6.61 -51.93 -0.34 0.61 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 44 H 0.05 0.73 3.93 -51.93 -0.20 0.53 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.03 0.79 3.31 -51.93 -0.17 0.61 16 47 H 0.04 0.99 8.02 -51.93 -0.42 0.58 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -32.79 370.98 -8.63 -41.42 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.81 Total: 0.19 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.60 Total: 0.25 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.25 Total: -55.03 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.16 Total: 18.58 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.79 -8.63 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317767838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.797 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds