Wall clock time and date at job start Tue Mar 31 2020 19:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46869 * 2 1 4 4 N 1.46494 * 109.46797 * 179.97438 * 3 2 1 5 5 C 1.34783 * 119.99907 * 90.00354 * 4 3 2 6 6 O 1.21281 * 119.99935 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.99954 * 359.97438 * 5 4 3 8 8 C 1.53005 * 109.47085 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47088 * 180.02562 * 8 7 5 10 10 C 1.33642 * 126.04067 * 90.02038 * 9 8 7 11 11 N 1.31781 * 114.50181 * 179.97438 * 10 9 8 12 12 C 1.29024 * 117.12463 * 0.02562 * 11 10 9 13 13 S 1.70978 * 110.16811 * 359.97438 * 12 11 10 14 14 C 1.46500 * 120.00354 * 269.99692 * 4 3 2 15 15 H 1.09001 * 110.88397 * 359.30165 * 14 4 3 16 16 C 1.55152 * 111.00531 * 123.18319 * 14 4 3 17 17 C 1.54323 * 102.94148 * 153.58129 * 16 14 4 18 18 N 1.47013 * 107.27241 * 337.80221 * 17 16 14 19 19 C 1.36942 * 125.65225 * 178.99661 * 18 17 16 20 20 H 1.07992 * 120.00157 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99535 * 359.97438 * 19 18 17 22 22 N 1.31623 * 120.00069 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99768 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46804 * 89.99794 * 23 21 19 25 25 H 1.48496 * 109.46902 * 210.00003 * 23 21 19 26 26 H 1.48504 * 109.47023 * 330.00078 * 23 21 19 27 27 C 1.47475 * 108.72513 * 358.98133 * 18 17 16 28 28 H 1.09005 * 109.46694 * 60.00561 * 1 2 3 29 29 H 1.09003 * 109.46487 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47430 * 300.00238 * 1 2 3 31 31 H 1.08994 * 109.47172 * 240.00238 * 2 1 3 32 32 H 1.08995 * 109.46652 * 119.99361 * 2 1 3 33 33 H 1.08999 * 109.47003 * 59.99419 * 3 2 1 34 34 H 1.09004 * 109.46871 * 299.99784 * 3 2 1 35 35 H 1.09001 * 109.47219 * 60.00436 * 7 5 4 36 36 H 1.08994 * 109.47320 * 300.00480 * 7 5 4 37 37 H 1.09001 * 109.47117 * 59.99907 * 8 7 5 38 38 H 1.09003 * 109.46791 * 300.00211 * 8 7 5 39 39 H 1.07996 * 122.74740 * 0.02782 * 10 9 8 40 40 H 1.07998 * 124.91909 * 179.97438 * 12 11 10 41 41 H 1.09000 * 110.71928 * 271.94232 * 16 14 4 42 42 H 1.08994 * 110.72206 * 35.21265 * 16 14 4 43 43 H 1.08996 * 109.88603 * 97.22814 * 17 16 14 44 44 H 1.09004 * 109.88012 * 218.38505 * 17 16 14 45 45 H 0.96997 * 119.99405 * 180.02562 * 22 21 19 46 46 H 1.09003 * 110.34370 * 265.25199 * 27 18 17 47 47 H 1.08991 * 110.40681 * 142.91262 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1794 1.4424 -1.1664 6 8 5.3922 1.4429 -1.1659 7 6 3.4264 1.4418 -2.4718 8 6 4.4211 1.4411 -3.6343 9 6 3.6682 1.4411 -4.9397 10 6 3.2760 2.5217 -5.6212 11 7 2.6311 2.2580 -6.7398 12 6 2.4571 1.0152 -7.0396 13 16 3.1496 0.0162 -5.8372 14 6 4.2370 1.4428 1.2696 15 1 3.5491 1.4554 2.1150 16 6 5.2016 0.2306 1.3555 17 6 6.3010 0.7311 2.3158 18 7 6.2700 2.2006 2.2869 19 6 7.0777 3.0305 3.0178 20 1 6.9765 4.1017 2.9250 21 6 8.0265 2.4948 3.8779 22 7 8.1501 1.1893 3.9906 23 14 9.1288 3.6269 4.8743 24 1 8.4810 3.9286 6.1761 25 1 10.4346 2.9615 5.1135 26 1 9.3469 4.8906 4.1253 27 6 5.2253 2.6336 1.3403 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 2.7994 2.3315 -2.5301 36 1 2.8000 0.5516 -2.5295 37 1 5.0478 0.5512 -3.5758 38 1 5.0478 2.3311 -3.5767 39 1 3.4723 3.5285 -5.2834 40 1 1.9476 0.6576 -7.9222 41 1 4.6924 -0.6386 1.7717 42 1 5.6205 0.0009 0.3758 43 1 6.1003 0.3758 3.3265 44 1 7.2754 0.3742 1.9820 45 1 8.8128 0.8151 4.5919 46 1 5.6592 2.8253 0.3588 47 1 4.7201 3.5244 1.7132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317767839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:52 Heat of formation + Delta-G solvation = 34.140821 kcal Electronic energy + Delta-G solvation = -27281.693849 eV Core-core repulsion = 23592.161964 eV Total energy + Delta-G solvation = -3689.531884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.27977 -39.79168 -36.95398 -35.97602 -34.31305 -32.99833 -31.79993 -29.80220 -28.95975 -27.40776 -26.39604 -25.65323 -24.44874 -23.36227 -21.90748 -20.87626 -20.25682 -19.96993 -18.62584 -18.27388 -17.00182 -16.78853 -16.04597 -15.82333 -15.31675 -14.78829 -14.72353 -14.50722 -14.24268 -14.14799 -13.88936 -13.78590 -13.27381 -12.94657 -12.75611 -12.51118 -12.37778 -12.28096 -12.09696 -11.99602 -11.75965 -11.62825 -11.45287 -11.16848 -10.86974 -10.83528 -10.79013 -10.59103 -10.27095 -10.03549 -9.93876 -9.85773 -9.59824 -9.56682 -9.26290 -9.01873 -8.54545 -8.30343 -6.69495 -5.62005 -2.94438 0.41359 1.06673 1.46744 2.55399 2.82347 3.12040 3.45165 3.50036 3.52440 4.05608 4.36146 4.58444 4.69532 4.71819 4.80286 4.84893 4.94956 4.97592 5.09882 5.20622 5.24954 5.34534 5.45267 5.47352 5.53694 5.61011 5.66206 5.76402 5.80940 5.83616 5.84147 5.89226 5.94332 5.95581 6.10274 6.27676 6.54427 6.63564 6.71447 6.77942 7.24907 7.40464 7.61136 7.67177 7.76583 7.92297 8.34987 8.43593 9.31498 9.91951 10.58996 11.49736 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002679 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.450064 B =10448.773873 C =11575.076832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.108 3.892 4 N -0.604 5.604 5 C 0.509 3.491 6 O -0.515 6.515 7 C -0.135 4.135 8 C -0.030 4.030 9 C -0.204 4.204 10 C 0.028 3.972 11 N -0.470 5.470 12 C 0.009 3.991 13 S 0.119 5.881 14 C 0.131 3.869 15 H 0.089 0.911 16 C -0.153 4.153 17 C 0.186 3.814 18 N -0.602 5.602 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.127 3.873 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.176 0.824 40 H 0.197 0.803 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.251 0.749 46 H 0.044 0.956 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.206 -4.164 -17.978 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.015 4.015 4 N -0.336 5.336 5 C 0.296 3.704 6 O -0.390 6.390 7 C -0.175 4.175 8 C -0.070 4.070 9 C -0.326 4.326 10 C -0.123 4.123 11 N -0.183 5.183 12 C -0.288 4.288 13 S 0.371 5.629 14 C 0.028 3.972 15 H 0.107 0.893 16 C -0.192 4.192 17 C 0.061 3.939 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.000 4.000 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.193 0.807 40 H 0.214 0.786 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.517 -4.835 -18.099 25.647 hybrid contribution 0.527 1.313 0.801 1.625 sum -16.990 -3.523 -17.298 24.501 Atomic orbital electron populations 1.21707 0.95248 1.01909 1.01875 1.21991 0.95916 0.97386 1.02971 1.21669 0.79922 0.96787 1.03159 1.47977 1.06041 1.73351 1.06253 1.20425 0.88162 0.76868 0.84971 1.90774 1.13496 1.47743 1.86998 1.21757 0.99099 1.04395 0.92275 1.19825 0.95725 1.05584 0.85880 1.26110 1.08035 0.94807 1.03611 1.21822 0.99160 1.00372 0.90940 1.66324 1.15626 1.19240 1.17070 1.28353 1.04818 0.91380 1.04263 1.84156 1.50505 1.11881 1.16339 1.22408 0.93255 0.98401 0.83169 0.89279 1.23231 0.97998 0.95966 1.02039 1.21037 0.94319 0.83290 0.95300 1.44332 1.38919 1.02061 1.47564 1.19045 1.10860 0.88961 1.16214 0.90593 1.24791 0.99621 0.95996 1.00247 1.69976 1.37293 1.09065 1.40751 0.86121 0.80079 0.79525 0.80070 1.21716 1.21722 1.20762 1.21865 0.89641 0.93513 0.94962 0.92723 0.92533 0.92472 0.91880 0.91197 0.90214 0.90617 0.88842 0.89098 0.89451 0.88496 0.80656 0.78627 0.92905 0.90592 0.93892 0.94018 0.93879 0.93842 0.95154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.14 -1.24 6.26 -26.72 -0.17 -1.41 16 3 C 0.11 1.03 5.20 -4.04 -0.02 1.01 16 4 N -0.60 -8.33 2.56 -163.67 -0.42 -8.75 16 5 C 0.51 7.32 6.95 -10.98 -0.08 7.24 16 6 O -0.51 -9.79 12.02 5.56 0.07 -9.73 16 7 C -0.13 -1.32 4.24 -27.88 -0.12 -1.44 16 8 C -0.03 -0.30 5.04 -27.88 -0.14 -0.44 16 9 C -0.20 -1.88 5.85 -35.92 -0.21 -2.09 16 10 C 0.03 0.26 11.25 -19.18 -0.22 0.05 16 11 N -0.47 -4.82 10.54 -15.75 -0.17 -4.99 16 12 C 0.01 0.07 12.23 51.58 0.63 0.70 16 13 S 0.12 0.92 23.22 -107.50 -2.50 -1.58 16 14 C 0.13 2.34 3.55 -65.78 -0.23 2.11 16 15 H 0.09 1.50 7.88 -51.93 -0.41 1.09 16 16 C -0.15 -3.09 6.31 -24.90 -0.16 -3.24 16 17 C 0.19 4.78 5.37 -3.07 -0.02 4.76 16 18 N -0.60 -16.24 3.40 -170.04 -0.58 -16.81 16 19 C -0.22 -6.47 10.28 -15.06 -0.15 -6.63 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -28.07 10.31 55.49 0.57 -27.50 16 23 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 C 0.13 2.82 6.61 -2.50 -0.02 2.80 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.54 7.22 -51.93 -0.37 0.17 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.73 7.95 -51.93 -0.41 0.32 16 34 H 0.08 0.57 6.44 -51.93 -0.33 0.24 16 35 H 0.09 0.77 7.40 -51.93 -0.38 0.38 16 36 H 0.09 0.76 7.18 -51.93 -0.37 0.39 16 37 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.18 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.20 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.61 5.98 -51.93 -0.31 1.30 16 43 H 0.04 1.19 7.38 -51.93 -0.38 0.81 16 44 H 0.04 1.21 7.50 -51.93 -0.39 0.82 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.04 1.04 5.81 -51.93 -0.30 0.74 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -34.74 385.50 -10.30 -45.04 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.44 Total: -1.67 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.62 Total: 2.39 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.59 Total: -58.05 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.74 -10.30 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317767839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.183 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds