Wall clock time and date at job start Tue Mar 31 2020 21:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.50076 * 2 1 4 4 C 1.53038 * 109.49417 * 120.07067 * 2 1 3 5 5 C 1.53040 * 109.53530 * 181.34529 * 4 2 1 6 6 C 1.53195 * 109.34382 * 298.61636 * 5 4 2 7 7 N 1.47006 * 108.73289 * 54.62151 * 6 5 4 8 8 C 1.34772 * 120.61189 * 126.38936 * 7 6 5 9 9 O 1.21282 * 120.00024 * 183.93699 * 8 7 6 10 10 C 1.50699 * 120.00325 * 3.94498 * 8 7 6 11 11 C 1.52996 * 109.47378 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47072 * 179.97438 * 11 10 8 13 13 C 1.33638 * 126.03718 * 90.00035 * 12 11 10 14 14 N 1.31785 * 114.50076 * 179.97438 * 13 12 11 15 15 C 1.29023 * 117.12319 * 0.02562 * 14 13 12 16 16 S 1.70982 * 110.16817 * 359.72024 * 15 14 13 17 17 C 1.46925 * 118.75548 * 306.40885 * 7 6 5 18 18 H 1.08996 * 109.58718 * 293.82734 * 17 7 6 19 19 C 1.52997 * 109.70372 * 173.46520 * 17 7 6 20 20 N 1.46503 * 109.47404 * 298.24425 * 19 17 7 21 21 C 1.36931 * 119.99925 * 185.09757 * 20 19 17 22 22 H 1.08003 * 120.00245 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99984 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99733 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47040 * 89.99776 * 25 23 21 27 27 H 1.48502 * 109.46948 * 209.99282 * 25 23 21 28 28 H 1.48494 * 109.47385 * 329.99719 * 25 23 21 29 29 H 1.09004 * 109.47019 * 299.93612 * 1 2 3 30 30 H 1.09004 * 109.47362 * 59.92708 * 1 2 3 31 31 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46221 * 61.33047 * 4 2 1 33 33 H 1.08991 * 109.46122 * 301.36378 * 4 2 1 34 34 H 1.09007 * 109.49888 * 58.58364 * 5 4 2 35 35 H 1.09000 * 109.49761 * 178.64954 * 5 4 2 36 36 H 1.08994 * 109.58719 * 174.43373 * 6 5 4 37 37 H 1.08997 * 109.58372 * 294.86882 * 6 5 4 38 38 H 1.09002 * 109.46904 * 300.00161 * 10 8 7 39 39 H 1.09006 * 109.47226 * 59.99244 * 10 8 7 40 40 H 1.09000 * 109.46726 * 299.99472 * 11 10 8 41 41 H 1.08994 * 109.47135 * 59.99684 * 11 10 8 42 42 H 1.08007 * 122.75220 * 359.97438 * 13 12 11 43 43 H 1.07999 * 124.91821 * 180.02562 * 15 14 13 44 44 H 1.08997 * 109.46911 * 58.24058 * 19 17 7 45 45 H 1.09000 * 109.47213 * 178.23824 * 19 17 7 46 46 H 0.97003 * 119.99624 * 5.09677 * 20 19 17 47 47 H 0.97003 * 119.99699 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0407 -0.7229 1.2485 5 6 3.5707 -0.6942 1.2665 6 6 4.1066 -1.4259 0.0319 7 7 3.5052 -0.8283 -1.1691 8 6 4.2818 -0.3845 -2.1772 9 8 3.7789 0.1710 -3.1308 10 6 5.7751 -0.5787 -2.1197 11 6 6.4150 0.0109 -3.3782 12 6 7.9084 -0.1827 -3.3203 13 6 8.5833 -1.2365 -3.7893 14 7 9.8883 -1.1698 -3.6185 15 6 10.3517 -0.1187 -3.0309 16 16 9.0736 0.9436 -2.6289 17 6 2.0419 -0.7237 -1.2495 18 1 1.6063 -1.7216 -1.2979 19 6 1.6492 0.0686 -2.4980 20 7 2.1938 1.4256 -2.4067 21 6 1.8834 2.3538 -3.3643 22 1 1.2374 2.0854 -4.1873 23 6 2.3998 3.6395 -3.2781 24 7 3.1874 3.9664 -2.2755 25 14 1.9769 4.9055 -4.5849 26 1 0.7493 5.6389 -4.1847 27 1 3.1019 5.8643 -4.7276 28 1 1.7434 4.2198 -5.8812 29 1 -0.3633 0.5129 0.8906 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6971 -1.7572 1.2353 33 1 1.6577 -0.2244 2.1389 34 1 3.9154 0.3399 1.2546 35 1 3.9332 -1.1882 2.1680 36 1 5.1908 -1.3233 -0.0118 37 1 3.8391 -2.4811 0.0879 38 1 6.1734 -0.0747 -1.2389 39 1 6.0012 -1.6435 -2.0622 40 1 6.0167 -0.4935 -4.2585 41 1 6.1890 1.0756 -3.4360 42 1 8.0990 -2.0742 -4.2692 43 1 11.3961 0.0659 -2.8273 44 1 2.0508 -0.4252 -3.3829 45 1 0.5627 0.1172 -2.5708 46 1 2.7742 1.6665 -1.6677 47 1 3.5479 4.8649 -2.2150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319861986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:18 Heat of formation + Delta-G solvation = 50.855705 kcal Electronic energy + Delta-G solvation = -28366.928442 eV Core-core repulsion = 24678.121370 eV Total energy + Delta-G solvation = -3688.807073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25198 -39.58960 -37.28405 -34.91581 -33.69455 -33.15895 -31.99322 -30.09426 -29.30781 -27.13791 -25.90517 -25.59012 -23.98754 -22.89760 -22.48626 -21.02725 -20.10628 -19.68914 -18.29695 -18.01661 -17.10566 -16.34637 -15.71257 -15.45835 -14.95542 -14.64251 -14.47280 -14.24697 -14.15475 -14.01369 -13.78969 -13.37990 -13.25482 -12.81945 -12.75594 -12.49546 -12.29708 -12.01817 -11.87267 -11.78214 -11.59994 -11.45583 -11.31350 -10.97719 -10.74370 -10.68988 -10.63087 -10.50778 -10.33492 -10.02461 -9.75584 -9.67236 -9.46538 -9.26824 -8.95679 -8.69667 -8.26530 -7.96999 -6.48339 -5.53992 -2.73000 0.69139 1.35534 1.76824 2.80189 3.34438 3.48185 3.55381 3.60205 3.61846 4.30348 4.72603 4.79646 4.89845 5.03265 5.05217 5.14361 5.21611 5.22070 5.22998 5.39382 5.47784 5.51778 5.56520 5.70251 5.74225 5.81286 5.85544 5.86404 5.93524 5.99606 6.07051 6.09434 6.13267 6.15918 6.31438 6.37839 6.41178 6.50629 6.59756 6.74019 6.89832 7.04501 7.30862 7.64812 7.89637 8.01298 8.65144 8.98593 9.76849 10.37927 10.72995 11.70196 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.004565 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.982638 B = 6132.333045 C = 8436.018256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.112 4.112 5 C -0.137 4.137 6 C 0.114 3.886 7 N -0.616 5.616 8 C 0.480 3.520 9 O -0.449 6.449 10 C -0.126 4.126 11 C -0.030 4.030 12 C -0.196 4.196 13 C 0.019 3.981 14 N -0.472 5.472 15 C 0.000 4.000 16 S 0.130 5.870 17 C 0.149 3.851 18 H 0.061 0.939 19 C 0.158 3.842 20 N -0.695 5.695 21 C -0.203 4.203 22 H 0.063 0.937 23 C -0.022 4.022 24 N -0.941 5.941 25 Si 0.898 3.102 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.286 1.286 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.174 0.826 43 H 0.195 0.805 44 H 0.041 0.959 45 H 0.015 0.985 46 H 0.380 0.620 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 -13.256 7.153 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.010 4.010 7 N -0.354 5.354 8 C 0.265 3.735 9 O -0.318 6.318 10 C -0.167 4.167 11 C -0.071 4.071 12 C -0.318 4.318 13 C -0.131 4.131 14 N -0.185 5.185 15 C -0.298 4.298 16 S 0.382 5.618 17 C 0.046 3.954 18 H 0.079 0.921 19 C 0.030 3.970 20 N -0.339 5.339 21 C -0.335 4.335 22 H 0.081 0.919 23 C -0.216 4.216 24 N -0.592 5.592 25 Si 0.731 3.269 26 H -0.223 1.223 27 H -0.222 1.222 28 H -0.212 1.212 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.191 0.809 43 H 0.212 0.788 44 H 0.059 0.941 45 H 0.032 0.968 46 H 0.214 0.786 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.983 -12.319 6.719 16.144 hybrid contribution -0.151 0.154 -0.643 0.679 sum 7.832 -12.165 6.075 15.692 Atomic orbital electron populations 1.21749 0.94895 1.00776 1.02392 1.21506 0.95812 1.01321 0.93552 0.89297 1.21575 0.94929 1.00217 0.98254 1.21926 0.96604 1.01717 0.97243 1.21589 0.97958 0.96422 0.85046 1.47923 1.06187 1.63241 1.18005 1.20325 0.88305 0.80439 0.84451 1.91071 1.72839 1.35657 1.32229 1.21629 0.93898 1.01998 0.99220 1.19842 0.84515 1.04268 0.98438 1.26198 1.01641 0.97784 1.06156 1.21753 0.88001 0.99805 1.03544 1.66312 1.13871 1.23276 1.15043 1.28304 1.04648 0.93973 1.02838 1.84348 0.98789 1.23300 1.55343 1.21495 0.79093 0.98033 0.96793 0.92081 1.20968 0.94644 0.87732 0.93632 1.42207 1.57294 1.05482 1.28907 1.19154 1.21730 0.90370 1.02237 0.91890 1.24544 1.01110 0.97439 0.98498 1.69644 1.38388 1.19058 1.32102 0.86293 0.77025 0.81970 0.81646 1.22315 1.22207 1.21170 0.93118 0.91395 0.93576 0.92482 0.92153 0.91160 0.91468 0.90352 0.92275 0.89771 0.89884 0.88958 0.88730 0.80893 0.78821 0.94122 0.96758 0.78559 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.96 37.16 0.33 -1.68 16 2 C -0.10 -1.58 2.22 -90.50 -0.20 -1.78 16 3 H 0.09 1.74 6.69 -51.93 -0.35 1.39 16 4 C -0.11 -1.36 5.17 -26.69 -0.14 -1.49 16 5 C -0.14 -1.55 6.08 -26.61 -0.16 -1.72 16 6 C 0.11 1.30 6.34 -3.67 -0.02 1.28 16 7 N -0.62 -9.46 2.89 -165.16 -0.48 -9.94 16 8 C 0.48 8.40 6.97 -10.99 -0.08 8.32 16 9 O -0.45 -10.01 9.94 5.56 0.06 -9.96 16 10 C -0.13 -1.72 4.06 -27.89 -0.11 -1.84 16 11 C -0.03 -0.44 5.04 -27.88 -0.14 -0.58 16 12 C -0.20 -2.53 5.85 -35.92 -0.21 -2.74 16 13 C 0.02 0.24 11.25 -19.18 -0.22 0.03 16 14 N -0.47 -6.08 10.54 -15.75 -0.17 -6.24 16 15 C 0.00 0.00 12.23 51.58 0.63 0.63 16 16 S 0.13 1.52 23.22 -107.50 -2.50 -0.98 16 17 C 0.15 2.44 2.62 -67.60 -0.18 2.26 16 18 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 19 C 0.16 3.30 4.76 -4.04 -0.02 3.28 16 20 N -0.70 -17.61 2.84 -59.91 -0.17 -17.78 16 21 C -0.20 -5.83 9.75 -15.06 -0.15 -5.98 16 22 H 0.06 1.81 7.83 -52.48 -0.41 1.40 16 23 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 24 N -0.94 -28.91 13.06 55.49 0.72 -28.18 16 25 Si 0.90 23.44 29.55 -169.99 -5.02 18.41 16 26 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.79 5.96 -51.93 -0.31 0.48 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.10 7.53 -51.93 -0.39 0.71 16 39 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 41 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 42 H 0.17 1.84 8.06 -52.48 -0.42 1.41 16 43 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 44 H 0.04 0.93 6.27 -51.93 -0.33 0.61 16 45 H 0.01 0.31 6.72 -51.93 -0.35 -0.04 16 46 H 0.38 10.19 5.80 -40.82 -0.24 9.96 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -33.66 377.45 -9.96 -43.62 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.34 Total: 8.14 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.76 Total: -2.77 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.09 Total: -62.15 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.06 Total: -9.96 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.41 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.50 Total: -0.98 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.66 -9.96 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319861986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.473 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds