Wall clock time and date at job start Tue Mar 31 2020 21:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.50076 * 2 1 4 4 C 1.53038 * 109.49417 * 120.07067 * 2 1 3 5 5 C 1.53040 * 109.53530 * 181.34529 * 4 2 1 6 6 C 1.53195 * 109.34382 * 298.61636 * 5 4 2 7 7 N 1.47006 * 108.73289 * 54.62151 * 6 5 4 8 8 C 1.34772 * 120.61189 * 126.38936 * 7 6 5 9 9 O 1.21282 * 120.00024 * 183.93699 * 8 7 6 10 10 C 1.50699 * 120.00325 * 3.94498 * 8 7 6 11 11 C 1.52996 * 109.47378 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47072 * 179.97438 * 11 10 8 13 13 C 1.33638 * 126.03718 * 90.00035 * 12 11 10 14 14 N 1.31785 * 114.50076 * 179.97438 * 13 12 11 15 15 C 1.29023 * 117.12319 * 0.02562 * 14 13 12 16 16 S 1.70982 * 110.16817 * 359.72024 * 15 14 13 17 17 C 1.46925 * 118.75548 * 306.40885 * 7 6 5 18 18 H 1.08996 * 109.58718 * 293.82734 * 17 7 6 19 19 C 1.52997 * 109.70372 * 173.46520 * 17 7 6 20 20 N 1.46503 * 109.47404 * 298.24425 * 19 17 7 21 21 C 1.36931 * 119.99925 * 185.09757 * 20 19 17 22 22 H 1.08003 * 120.00245 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99984 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99733 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47040 * 89.99776 * 25 23 21 27 27 H 1.48502 * 109.46948 * 209.99282 * 25 23 21 28 28 H 1.48494 * 109.47385 * 329.99719 * 25 23 21 29 29 H 1.09004 * 109.47019 * 299.93612 * 1 2 3 30 30 H 1.09004 * 109.47362 * 59.92708 * 1 2 3 31 31 H 1.09001 * 109.47514 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46221 * 61.33047 * 4 2 1 33 33 H 1.08991 * 109.46122 * 301.36378 * 4 2 1 34 34 H 1.09007 * 109.49888 * 58.58364 * 5 4 2 35 35 H 1.09000 * 109.49761 * 178.64954 * 5 4 2 36 36 H 1.08994 * 109.58719 * 174.43373 * 6 5 4 37 37 H 1.08997 * 109.58372 * 294.86882 * 6 5 4 38 38 H 1.09002 * 109.46904 * 300.00161 * 10 8 7 39 39 H 1.09006 * 109.47226 * 59.99244 * 10 8 7 40 40 H 1.09000 * 109.46726 * 299.99472 * 11 10 8 41 41 H 1.08994 * 109.47135 * 59.99684 * 11 10 8 42 42 H 1.08007 * 122.75220 * 359.97438 * 13 12 11 43 43 H 1.07999 * 124.91821 * 180.02562 * 15 14 13 44 44 H 1.08997 * 109.46911 * 58.24058 * 19 17 7 45 45 H 1.09000 * 109.47213 * 178.23824 * 19 17 7 46 46 H 0.97003 * 119.99624 * 5.09677 * 20 19 17 47 47 H 0.97003 * 119.99699 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0407 -0.7229 1.2485 5 6 3.5707 -0.6942 1.2665 6 6 4.1066 -1.4259 0.0319 7 7 3.5052 -0.8283 -1.1691 8 6 4.2818 -0.3845 -2.1772 9 8 3.7789 0.1710 -3.1308 10 6 5.7751 -0.5787 -2.1197 11 6 6.4150 0.0109 -3.3782 12 6 7.9084 -0.1827 -3.3203 13 6 8.5833 -1.2365 -3.7893 14 7 9.8883 -1.1698 -3.6185 15 6 10.3517 -0.1187 -3.0309 16 16 9.0736 0.9436 -2.6289 17 6 2.0419 -0.7237 -1.2495 18 1 1.6063 -1.7216 -1.2979 19 6 1.6492 0.0686 -2.4980 20 7 2.1938 1.4256 -2.4067 21 6 1.8834 2.3538 -3.3643 22 1 1.2374 2.0854 -4.1873 23 6 2.3998 3.6395 -3.2781 24 7 3.1874 3.9664 -2.2755 25 14 1.9769 4.9055 -4.5849 26 1 0.7493 5.6389 -4.1847 27 1 3.1019 5.8643 -4.7276 28 1 1.7434 4.2198 -5.8812 29 1 -0.3633 0.5129 0.8906 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6971 -1.7572 1.2353 33 1 1.6577 -0.2244 2.1389 34 1 3.9154 0.3399 1.2546 35 1 3.9332 -1.1882 2.1680 36 1 5.1908 -1.3233 -0.0118 37 1 3.8391 -2.4811 0.0879 38 1 6.1734 -0.0747 -1.2389 39 1 6.0012 -1.6435 -2.0622 40 1 6.0167 -0.4935 -4.2585 41 1 6.1890 1.0756 -3.4360 42 1 8.0990 -2.0742 -4.2692 43 1 11.3961 0.0659 -2.8273 44 1 2.0508 -0.4252 -3.3829 45 1 0.5627 0.1172 -2.5708 46 1 2.7742 1.6665 -1.6677 47 1 3.5479 4.8649 -2.2150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319861986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:17 Heat of formation + Delta-G solvation = 29.905949 kcal Electronic energy + Delta-G solvation = -28367.836892 eV Core-core repulsion = 24678.121370 eV Total energy + Delta-G solvation = -3689.715522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55967 -40.54910 -38.56166 -36.51484 -35.03034 -34.52845 -33.55528 -31.76787 -30.46469 -28.54277 -27.00717 -26.80539 -25.55694 -24.41043 -23.78927 -22.22493 -21.16478 -20.84041 -19.56511 -19.15797 -18.99220 -17.65814 -16.93892 -16.78747 -16.33230 -16.07776 -15.76547 -15.58530 -15.41114 -15.06938 -14.85657 -14.79116 -14.73807 -14.31890 -14.06456 -13.75586 -13.53129 -13.24700 -13.22704 -13.13840 -12.93821 -12.78301 -12.66503 -12.55967 -12.43052 -12.12465 -12.00355 -11.84810 -11.70171 -11.57660 -11.39787 -11.06955 -10.83579 -10.61239 -10.24517 -9.92514 -9.69844 -9.33875 -8.55344 -7.81201 -4.97433 -0.23450 0.42652 0.85154 1.42914 1.44505 1.52444 1.85773 2.03296 2.26788 2.63140 3.44023 3.52045 3.64175 3.88495 3.92037 3.96496 4.02170 4.07038 4.15414 4.28004 4.32099 4.38906 4.44952 4.48788 4.53445 4.62311 4.65440 4.70661 4.86563 4.91294 4.94738 4.99885 5.00952 5.07622 5.10773 5.17358 5.23180 5.25354 5.32889 5.45613 5.50877 5.54981 5.65459 5.91545 6.40846 6.72475 6.74943 7.47972 7.65878 8.30842 8.54460 9.43453 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.004565 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.982638 B = 6132.333045 C = 8436.018256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.038 0.962 4 C -0.105 4.105 5 C -0.134 4.134 6 C 0.107 3.893 7 N -0.615 5.615 8 C 0.474 3.526 9 O -0.512 6.512 10 C -0.114 4.114 11 C -0.018 4.018 12 C -0.216 4.216 13 C 0.027 3.973 14 N -0.496 5.496 15 C 0.021 3.979 16 S 0.123 5.877 17 C 0.154 3.846 18 H 0.092 0.908 19 C 0.159 3.841 20 N -0.695 5.695 21 C -0.203 4.203 22 H 0.057 0.943 23 C -0.081 4.081 24 N -0.971 5.971 25 Si 0.957 3.043 26 H -0.289 1.289 27 H -0.299 1.299 28 H -0.281 1.281 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.188 0.812 43 H 0.231 0.769 44 H 0.022 0.978 45 H 0.011 0.989 46 H 0.370 0.630 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 -15.896 8.782 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.056 0.944 4 C -0.143 4.143 5 C -0.172 4.172 6 C -0.014 4.014 7 N -0.351 5.351 8 C 0.261 3.739 9 O -0.385 6.385 10 C -0.154 4.154 11 C -0.058 4.058 12 C -0.337 4.337 13 C -0.124 4.124 14 N -0.210 5.210 15 C -0.276 4.276 16 S 0.375 5.625 17 C 0.050 3.950 18 H 0.109 0.891 19 C 0.033 3.967 20 N -0.337 5.337 21 C -0.337 4.337 22 H 0.075 0.925 23 C -0.272 4.272 24 N -0.625 5.625 25 Si 0.789 3.211 26 H -0.217 1.217 27 H -0.226 1.226 28 H -0.206 1.206 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.205 0.795 43 H 0.247 0.753 44 H 0.039 0.961 45 H 0.029 0.971 46 H 0.203 0.797 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.016 -15.012 8.382 19.414 hybrid contribution -0.443 0.889 -1.140 1.512 sum 8.574 -14.123 7.242 18.039 Atomic orbital electron populations 1.21707 0.94150 1.02289 1.01234 1.21404 0.96443 0.98824 0.95072 0.94358 1.21543 0.95387 1.01159 0.96201 1.21928 0.96092 1.00448 0.98747 1.21948 0.98825 0.97700 0.82954 1.48088 1.05725 1.62442 1.18868 1.21062 0.89980 0.79052 0.83827 1.91046 1.74141 1.38604 1.34715 1.21577 0.90843 1.04106 0.98916 1.19538 0.86161 1.01290 0.98823 1.25932 1.00683 0.98885 1.08248 1.21983 0.88047 0.99839 1.02505 1.66397 1.13867 1.24262 1.16426 1.28938 1.05775 0.92472 1.00405 1.84421 0.99126 1.23532 1.55407 1.21410 0.80252 0.98536 0.94791 0.89054 1.20972 0.93864 0.86211 0.95674 1.42203 1.57068 1.06719 1.27713 1.19448 1.20624 0.91249 1.02334 0.92527 1.25199 1.02010 0.99265 1.00700 1.69796 1.39939 1.18953 1.33802 0.85338 0.76582 0.79605 0.79574 1.21714 1.22588 1.20631 0.92290 0.94579 0.90609 0.89728 0.91484 0.94115 0.87896 0.88737 0.89054 0.88988 0.86354 0.89780 0.93173 0.79484 0.75262 0.96062 0.97141 0.79681 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.96 71.98 0.64 -3.14 16 2 C -0.10 -2.96 2.22 -10.71 -0.02 -2.99 16 3 H 0.04 1.56 6.69 -2.39 -0.02 1.54 16 4 C -0.11 -2.23 5.17 30.62 0.16 -2.07 16 5 C -0.13 -2.65 6.08 30.67 0.19 -2.46 16 6 C 0.11 2.09 6.34 86.35 0.55 2.64 16 7 N -0.62 -18.25 2.89 -794.84 -2.29 -20.54 16 8 C 0.47 16.84 6.97 87.66 0.61 17.45 16 9 O -0.51 -24.06 9.94 -3.03 -0.03 -24.09 16 10 C -0.11 -3.05 4.06 29.85 0.12 -2.93 16 11 C -0.02 -0.54 5.04 29.85 0.15 -0.39 16 12 C -0.22 -5.50 5.85 24.64 0.14 -5.36 16 13 C 0.03 0.62 11.25 83.66 0.94 1.57 16 14 N -0.50 -11.73 10.54 -203.74 -2.15 -13.87 16 15 C 0.02 0.40 12.23 130.66 1.60 2.00 16 16 S 0.12 2.76 23.22 -56.49 -1.31 1.45 16 17 C 0.15 4.92 2.62 44.98 0.12 5.04 16 18 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 19 C 0.16 6.93 4.76 86.38 0.41 7.34 16 20 N -0.70 -37.16 2.84 -343.45 -0.97 -38.13 16 21 C -0.20 -12.25 9.75 84.04 0.82 -11.43 16 22 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 23 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 24 N -0.97 -62.39 13.06 21.65 0.28 -62.11 16 25 Si 0.96 50.00 29.55 68.60 2.03 52.02 16 26 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 27 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 28 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.04 1.21 6.66 -2.38 -0.02 1.20 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.56 5.96 -2.39 -0.01 1.54 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 2.33 7.53 -2.39 -0.02 2.32 16 39 H 0.12 2.33 8.08 -2.38 -0.02 2.31 16 40 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 41 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 42 H 0.19 3.67 8.06 -2.91 -0.02 3.64 16 43 H 0.23 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.02 1.04 6.27 -2.39 -0.01 1.02 16 45 H 0.01 0.48 6.72 -2.39 -0.02 0.46 16 46 H 0.37 21.06 5.80 -92.71 -0.54 20.52 16 47 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -78.59 377.45 2.88 -75.71 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.43 Total: 28.78 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 6.89 Total: 0.77 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -5.13 Total: -134.65 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.03 Total: -24.09 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.03 Total: 52.02 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.31 Total: 1.45 kcal Total: -78.59 2.88 -75.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319861986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.614 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds