Wall clock time and date at job start Tue Mar 31 2020 19:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46953 * 213.18019 * 3 2 1 5 5 C 1.46904 * 110.99710 * 76.10076 * 4 3 2 6 6 C 1.50701 * 109.47356 * 199.18324 * 5 4 3 7 7 N 1.29829 * 118.34542 * 4.08877 * 6 5 4 8 8 C 1.35638 * 121.62207 * 179.97438 * 7 6 5 9 9 C 1.39631 * 121.62376 * 180.02562 * 8 7 6 10 10 C 1.37707 * 119.69552 * 179.97438 * 9 8 7 11 11 C 1.38876 * 120.82898 * 359.97438 * 10 9 8 12 12 C 1.37794 * 120.56686 * 359.97438 * 11 10 9 13 13 C 1.39376 * 119.51845 * 0.02562 * 12 11 10 14 14 C 1.46961 * 121.90274 * 180.02562 * 13 12 11 15 15 O 1.21713 * 121.29162 * 359.97438 * 14 13 12 16 16 N 1.35349 * 117.42083 * 179.97438 * 14 13 12 17 17 C 1.37103 * 119.71120 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99953 * 136.35527 * 17 16 14 19 19 C 1.39076 * 120.00477 * 316.34596 * 17 16 14 20 20 N 1.31259 * 119.99542 * 339.75549 * 19 17 16 21 21 Si 1.86795 * 120.00148 * 159.75273 * 19 17 16 22 22 H 1.48506 * 109.47254 * 90.00143 * 21 19 17 23 23 H 1.48499 * 109.47091 * 210.00080 * 21 19 17 24 24 H 1.48499 * 109.47235 * 330.00125 * 21 19 17 25 25 C 1.46899 * 111.00473 * 200.05584 * 4 3 2 26 26 C 1.53002 * 109.46712 * 66.04805 * 25 4 3 27 27 C 1.52998 * 117.49708 * 243.74424 * 26 25 4 28 28 C 1.53005 * 117.49632 * 175.08949 * 26 25 4 29 29 H 4.40888 * 5.52016 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47193 * 93.18650 * 3 2 1 31 31 H 1.08996 * 109.47436 * 333.18362 * 3 2 1 32 32 H 1.09003 * 109.46806 * 79.18346 * 5 4 3 33 33 H 1.08998 * 109.47468 * 319.18630 * 5 4 3 34 34 H 1.08008 * 120.15232 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.58685 * 180.28351 * 10 9 8 36 36 H 1.07989 * 119.71874 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.24212 * 180.02562 * 12 11 10 38 38 H 0.97002 * 119.99465 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.46974 * 186.04864 * 25 4 3 40 40 H 1.08995 * 109.46841 * 306.05189 * 25 4 3 41 41 H 1.08998 * 115.54955 * 29.41987 * 26 25 4 42 42 H 1.09001 * 117.49829 * 0.02562 * 27 26 25 43 43 H 1.09006 * 117.49922 * 145.01868 * 27 26 25 44 44 H 1.08994 * 117.49495 * 214.98125 * 28 26 25 45 45 H 1.09006 * 117.49870 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.1601 0.7580 5 6 3.0001 0.9387 2.2039 6 6 3.0524 2.2626 2.9220 7 7 3.1181 3.3471 2.2112 8 6 3.1676 4.5736 2.7883 9 6 3.2377 5.7400 2.0239 10 6 3.2857 6.9649 2.6513 11 6 3.2649 7.0562 4.0369 12 6 3.1950 5.9197 4.8130 13 6 3.1455 4.6700 4.1979 14 6 3.0697 3.4246 4.9744 15 8 3.0477 3.4387 6.1912 16 7 3.0254 2.2613 4.2839 17 6 2.9547 1.0714 4.9613 18 1 2.2765 0.2997 4.6279 19 6 3.7564 0.8578 6.0775 20 7 4.8350 1.5833 6.2592 21 14 3.2979 -0.4613 7.3181 22 1 3.9279 -1.7482 6.9279 23 1 3.7795 -0.0628 8.6651 24 1 1.8219 -0.6216 7.3476 25 6 4.5250 1.4742 0.4011 26 6 4.5848 1.9399 -1.0551 27 6 5.3739 1.0762 -2.0412 28 6 5.9348 2.4259 -1.5866 29 1 -1.0501 -0.0005 -0.0001 30 1 3.0094 0.0579 -1.0261 31 1 3.0098 -0.9163 0.4636 32 1 3.8151 0.3041 2.5520 33 1 2.0470 0.4513 2.4095 34 1 3.2541 5.6818 0.9455 35 1 3.3353 7.8662 2.0584 36 1 3.3029 8.0261 4.5102 37 1 3.1786 5.9968 5.8901 38 1 5.3940 1.4346 7.0380 39 1 4.8970 2.2659 1.0513 40 1 5.1416 0.5838 0.5234 41 1 3.6890 2.4374 -1.4267 42 1 5.8501 0.1760 -1.6525 43 1 4.9973 1.0057 -3.0617 44 1 5.9269 3.2429 -2.3080 45 1 6.7802 2.4143 -0.8986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324383296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:16 Heat of formation + Delta-G solvation = 100.058362 kcal Electronic energy + Delta-G solvation = -29293.060469 eV Core-core repulsion = 25470.943032 eV Total energy + Delta-G solvation = -3822.117437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21251 -39.65879 -39.17778 -38.06098 -36.83976 -35.54320 -33.74904 -33.69969 -31.96273 -31.16437 -28.77387 -28.49796 -27.63095 -25.14395 -24.47332 -23.14330 -22.93041 -22.29975 -21.17630 -20.51447 -19.58808 -18.84582 -18.64589 -17.61283 -16.97274 -16.80453 -16.37187 -16.19892 -15.98158 -15.67162 -15.51527 -15.40829 -15.11373 -14.65281 -14.61749 -14.27175 -13.95849 -13.74724 -13.67217 -13.53190 -13.43556 -13.02531 -12.94679 -12.59432 -12.48739 -12.37400 -12.26091 -12.20261 -12.07085 -11.31806 -11.28322 -11.12015 -10.99662 -10.79883 -10.68729 -10.45215 -10.24658 -9.91069 -9.23944 -8.79085 -8.53871 -6.50218 -0.08862 0.09318 1.30857 1.39114 1.48644 1.55842 1.79615 2.03841 2.04541 2.25779 2.50048 2.86799 2.98429 3.18570 3.30391 3.40050 3.64068 3.81675 3.89729 4.05093 4.12861 4.18163 4.20487 4.26983 4.33961 4.41893 4.48552 4.58747 4.61871 4.63223 4.67591 4.86810 4.89366 4.97029 5.02590 5.13726 5.14678 5.19848 5.22468 5.36714 5.37532 5.46636 5.55930 5.57378 5.79200 5.95988 6.05868 6.18862 6.32103 6.61255 6.84047 6.85743 7.44836 7.62800 8.44452 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.007881 B = 0.005373 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3552.151743 B = 5209.676493 C = 7254.285692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.203 4.203 3 C 0.161 3.839 4 N -0.515 5.515 5 C 0.134 3.866 6 C 0.355 3.645 7 N -0.523 5.523 8 C 0.138 3.862 9 C -0.124 4.124 10 C -0.072 4.072 11 C -0.150 4.150 12 C -0.067 4.067 13 C -0.241 4.241 14 C 0.498 3.502 15 O -0.559 6.559 16 N -0.371 5.371 17 C -0.404 4.404 18 H 0.117 0.883 19 C 0.036 3.964 20 N -0.853 5.853 21 Si 0.989 3.011 22 H -0.248 1.248 23 H -0.287 1.287 24 H -0.259 1.259 25 C 0.100 3.900 26 C -0.144 4.144 27 C -0.170 4.170 28 C -0.179 4.179 29 H 0.240 0.760 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.109 0.891 38 H 0.276 0.724 39 H 0.057 0.943 40 H 0.037 0.963 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 0.141 -15.643 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.203 4.203 3 C 0.035 3.965 4 N -0.239 5.239 5 C 0.005 3.995 6 C 0.091 3.909 7 N -0.248 5.248 8 C 0.023 3.977 9 C -0.143 4.143 10 C -0.091 4.091 11 C -0.168 4.168 12 C -0.087 4.087 13 C -0.248 4.248 14 C 0.295 3.705 15 O -0.438 6.438 16 N -0.076 5.076 17 C -0.531 4.531 18 H 0.135 0.865 19 C -0.175 4.175 20 N -0.483 5.483 21 Si 0.810 3.190 22 H -0.172 1.172 23 H -0.213 1.213 24 H -0.183 1.183 25 C -0.027 4.027 26 C -0.163 4.163 27 C -0.207 4.207 28 C -0.217 4.217 29 H 0.256 0.744 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.166 0.834 35 H 0.189 0.811 36 H 0.175 0.825 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.140 0.659 -15.679 15.735 hybrid contribution 0.301 -1.033 2.560 2.777 sum -0.839 -0.373 -13.119 13.151 Atomic orbital electron populations 1.25581 0.96789 0.99815 1.00127 1.23377 0.95076 1.00828 1.01041 1.19131 0.84903 0.91959 1.00477 1.61440 1.22037 1.37631 1.02763 1.20658 1.02685 0.88995 0.87171 1.23436 0.90002 0.96812 0.80699 1.68590 1.26515 0.95518 1.34215 1.19362 0.95572 0.93669 0.89073 1.20991 1.03208 0.89753 1.00393 1.21569 0.95242 0.97973 0.94305 1.21341 1.03329 0.97848 0.94319 1.21013 0.96448 0.91482 0.99777 1.21034 1.13869 0.94606 0.95283 1.18900 0.79606 0.84389 0.87652 1.90574 1.51846 1.86782 1.14562 1.42343 1.51887 1.07921 1.05439 1.19872 1.25700 0.93542 1.13941 0.86514 1.26377 0.92252 0.99457 0.99447 1.69912 1.11336 1.39497 1.27551 0.85041 0.79631 0.77661 0.76617 1.17199 1.21311 1.18298 1.21556 0.86854 0.98815 0.95491 1.22068 0.96300 1.04819 0.93097 1.23172 1.03291 0.94453 0.99802 1.22972 0.96413 0.98613 1.03654 0.74392 0.86315 0.91331 0.91590 0.88610 0.83360 0.81113 0.82473 0.87250 0.91439 0.92444 0.94503 0.87601 0.88533 0.87413 0.87824 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.03 19.25 74.32 1.43 -3.60 16 2 C -0.20 -5.49 12.80 31.12 0.40 -5.09 16 3 C 0.16 3.99 5.33 84.50 0.45 4.44 16 4 N -0.51 -15.91 3.84 -911.91 -3.51 -19.42 16 5 C 0.13 5.02 3.93 85.56 0.34 5.36 16 6 C 0.35 16.37 7.07 137.94 0.98 17.35 16 7 N -0.52 -22.98 8.19 -179.54 -1.47 -24.45 16 8 C 0.14 6.06 6.63 39.65 0.26 6.32 16 9 C -0.12 -4.19 10.03 22.48 0.23 -3.96 16 10 C -0.07 -1.98 10.00 22.30 0.22 -1.75 16 11 C -0.15 -4.65 10.02 22.32 0.22 -4.42 16 12 C -0.07 -2.85 9.68 22.44 0.22 -2.63 16 13 C -0.24 -11.89 5.89 -19.96 -0.12 -12.01 16 14 C 0.50 28.71 6.94 86.44 0.60 29.31 16 15 O -0.56 -35.60 14.55 -4.39 -0.06 -35.67 16 16 N -0.37 -19.95 2.66 -460.24 -1.22 -21.17 16 17 C -0.40 -21.52 8.05 84.07 0.68 -20.84 16 18 H 0.12 5.64 7.29 -2.91 -0.02 5.62 16 19 C 0.04 1.94 4.34 84.98 0.37 2.31 16 20 N -0.85 -50.15 11.85 21.68 0.26 -49.89 16 21 Si 0.99 42.16 29.60 68.60 2.03 44.19 16 22 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 C 0.10 2.91 4.81 86.30 0.42 3.32 16 26 C -0.14 -3.34 4.68 -10.79 -0.05 -3.39 16 27 C -0.17 -2.97 9.91 30.62 0.30 -2.66 16 28 C -0.18 -3.60 10.25 30.62 0.31 -3.29 16 29 H 0.24 4.07 7.80 -4.41 -0.03 4.03 16 30 H 0.12 2.44 6.62 -2.38 -0.02 2.43 16 31 H 0.07 1.54 7.99 -2.39 -0.02 1.52 16 32 H 0.07 2.52 7.78 -2.39 -0.02 2.50 16 33 H 0.10 3.52 6.97 -2.39 -0.02 3.50 16 34 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.16 3.59 8.06 -2.92 -0.02 3.56 16 37 H 0.11 4.78 7.83 -2.91 -0.02 4.76 16 38 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.06 2.08 6.66 -2.39 -0.02 2.06 16 40 H 0.04 0.99 7.85 -2.39 -0.02 0.97 16 41 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 43 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -74.41 381.50 4.28 -70.13 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 1.00 Total: 31.52 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 7.25 Total: 4.75 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -5.94 Total: -114.92 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.06 Total: -35.67 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -74.41 4.28 -70.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324383296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.188 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds