Wall clock time and date at job start Tue Mar 31 2020 19:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47595 * 34.01589 * 3 2 1 5 5 C 1.34770 * 119.99960 * 276.89511 * 4 3 2 6 6 O 1.21549 * 119.99890 * 185.74763 * 5 4 3 7 7 C 1.47988 * 120.00649 * 5.74893 * 5 4 3 8 8 C 1.39484 * 119.57748 * 175.84742 * 7 5 4 9 9 C 1.38213 * 119.21486 * 179.97438 * 8 7 5 10 10 C 1.39993 * 118.36353 * 0.02562 * 9 8 7 11 11 C 1.43194 * 120.46388 * 180.02562 * 10 9 8 12 12 C 6.91489 * 87.32370 * 297.25195 * 2 1 3 13 13 C 1.39928 * 119.07579 * 0.02562 * 10 9 8 14 14 N 1.31296 * 120.69863 * 359.71813 * 13 10 9 15 15 C 1.46509 * 119.99868 * 96.89002 * 4 3 2 16 16 C 1.53069 * 109.44848 * 119.79068 * 15 4 3 17 17 C 1.53192 * 109.29220 * 181.24140 * 16 15 4 18 18 N 1.46931 * 108.89465 * 305.57979 * 17 16 15 19 19 C 1.36936 * 120.63209 * 233.51405 * 18 17 16 20 20 H 1.07995 * 120.00001 * 144.63547 * 19 18 17 21 21 C 1.38817 * 119.99700 * 324.63746 * 19 18 17 22 22 N 1.31618 * 120.00260 * 4.19858 * 21 19 18 23 23 Si 1.86806 * 119.99624 * 184.20455 * 21 19 18 24 24 H 1.48500 * 109.47069 * 89.99922 * 23 21 19 25 25 H 1.48502 * 109.46899 * 209.99717 * 23 21 19 26 26 H 1.48502 * 109.47118 * 329.99678 * 23 21 19 27 27 C 1.46926 * 118.73469 * 53.53720 * 18 17 16 28 28 C 1.53041 * 109.45734 * 240.00290 * 15 4 3 29 29 H 4.40638 * 5.51379 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47179 * 274.01201 * 3 2 1 31 31 H 1.09007 * 109.46988 * 154.01606 * 3 2 1 32 32 H 1.08006 * 120.39682 * 359.97438 * 8 7 5 33 33 H 1.07994 * 120.82335 * 180.02562 * 9 8 7 34 34 H 7.86131 * 84.93963 * 294.63707 * 2 1 3 35 35 H 1.07997 * 119.64627 * 179.97438 * 13 10 9 36 36 H 1.08991 * 109.45863 * 359.97438 * 15 4 3 37 37 H 1.09005 * 109.39058 * 61.37351 * 16 15 4 38 38 H 1.08995 * 109.62724 * 301.25741 * 16 15 4 39 39 H 1.09002 * 109.58761 * 185.71975 * 17 16 15 40 40 H 1.09000 * 109.58578 * 65.43814 * 17 16 15 41 41 H 0.96999 * 119.99808 * 179.97438 * 22 21 19 42 42 H 1.08993 * 109.58658 * 66.18066 * 27 18 17 43 43 H 1.09004 * 109.58235 * 186.45903 * 27 18 17 44 44 H 1.08994 * 109.49972 * 58.66810 * 28 15 4 45 45 H 1.08992 * 109.49922 * 298.56535 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1439 -0.7726 5 6 3.2280 -2.3574 -0.1937 6 8 3.7306 -3.2831 -0.8003 7 6 2.7185 -2.5629 1.1804 8 6 2.7398 -3.8410 1.7386 9 6 2.2625 -4.0243 3.0227 10 6 1.7730 -2.9107 3.7155 11 6 1.2683 -3.0492 5.0484 12 6 0.8512 -3.1629 6.1406 13 6 1.7837 -1.6604 3.0874 14 7 2.2504 -1.5270 1.8675 15 6 3.5226 -0.9694 -2.1747 16 6 4.9966 -1.3449 -2.3465 17 6 5.4063 -1.1316 -3.8071 18 7 4.4852 -1.8796 -4.6737 19 6 4.9645 -2.7660 -5.6009 20 1 4.4164 -3.6714 -5.8161 21 6 6.1548 -2.5009 -6.2641 22 7 6.8648 -1.4400 -5.9433 23 14 6.7489 -3.6498 -7.6119 24 1 6.2086 -3.1997 -8.9198 25 1 8.2332 -3.6336 -7.6575 26 1 6.2774 -5.0294 -7.3298 27 6 3.0402 -1.6580 -4.5268 28 6 2.6557 -1.8687 -3.0590 29 1 -1.0498 -0.0002 -0.0004 30 1 3.0094 -0.0711 1.0251 31 1 3.0089 0.9247 -0.4503 32 1 3.1246 -4.6775 1.1741 33 1 2.2671 -5.0024 3.4804 34 1 0.4806 -3.2644 7.1178 35 1 1.4078 -0.7952 3.6133 36 1 3.3792 0.0715 -2.4642 37 1 5.1369 -2.3921 -2.0785 38 1 5.6116 -0.7180 -1.7009 39 1 6.4238 -1.4923 -3.9576 40 1 5.3553 -0.0701 -4.0496 41 1 7.6967 -1.2550 -6.4065 42 1 2.7945 -0.6392 -4.8263 43 1 2.4966 -2.3644 -5.1542 44 1 1.6054 -1.6141 -2.9180 45 1 2.8175 -2.9116 -2.7867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324438846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:21 Heat of formation + Delta-G solvation = 163.236041 kcal Electronic energy + Delta-G solvation = -28669.912174 eV Core-core repulsion = 24850.534327 eV Total energy + Delta-G solvation = -3819.377847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.04030 -39.45382 -36.97425 -35.82233 -34.63377 -33.08276 -32.52682 -31.99711 -31.00829 -29.93451 -29.41046 -26.90500 -25.80017 -24.35156 -23.93582 -22.33160 -22.00516 -20.25115 -19.54132 -19.16783 -18.38697 -17.19161 -17.07186 -16.47907 -16.03956 -15.50921 -15.39248 -15.04111 -14.69560 -14.24059 -14.02587 -13.96860 -13.66168 -13.53690 -13.19304 -13.02836 -12.92408 -12.59425 -12.52359 -12.15805 -11.96106 -11.44826 -11.25304 -11.11633 -10.83146 -10.70124 -10.46266 -10.35835 -10.29820 -10.04495 -9.99211 -9.97100 -9.84456 -9.68511 -9.33742 -9.21376 -9.11136 -8.47088 -8.28393 -6.45416 -5.69839 -3.21767 0.05610 0.87214 2.22973 2.27212 2.60492 3.02737 3.05151 3.32290 3.43503 3.49300 3.51351 3.71453 3.72864 4.00065 4.40001 4.44725 4.55807 4.58325 4.75456 4.85044 5.25155 5.32115 5.39090 5.47140 5.49781 5.60211 5.68055 5.72765 5.75432 5.85230 5.92873 6.05575 6.17606 6.26785 6.41476 6.44729 6.64258 6.69164 6.84070 6.92917 7.00185 7.09669 7.14651 7.36140 7.51056 7.65566 7.76377 7.87739 7.91644 8.29415 8.62933 9.33965 9.93028 10.52788 11.36347 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.002723 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.534262 B =10281.388472 C =10980.105906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.210 3.790 4 N -0.587 5.587 5 C 0.565 3.435 6 O -0.506 6.506 7 C 0.093 3.907 8 C -0.109 4.109 9 C -0.058 4.058 10 C -0.026 4.026 11 C -0.153 4.153 12 C -0.159 4.159 13 C 0.121 3.879 14 N -0.444 5.444 15 C 0.157 3.843 16 C -0.156 4.156 17 C 0.171 3.829 18 N -0.592 5.592 19 C -0.247 4.247 20 H 0.063 0.937 21 C 0.006 3.994 22 N -0.906 5.906 23 Si 0.903 3.097 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.152 3.848 28 C -0.145 4.145 29 H 0.209 0.791 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.227 0.773 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.013 0.987 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 1.354 23.131 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.165 4.165 3 C 0.088 3.912 4 N -0.318 5.318 5 C 0.351 3.649 6 O -0.381 6.381 7 C -0.044 4.044 8 C -0.130 4.130 9 C -0.084 4.084 10 C -0.029 4.029 11 C -0.153 4.153 12 C -0.176 4.176 13 C -0.039 4.039 14 N -0.155 5.155 15 C 0.056 3.944 16 C -0.196 4.196 17 C 0.045 3.955 18 N -0.315 5.315 19 C -0.377 4.377 20 H 0.080 0.920 21 C -0.192 4.192 22 N -0.551 5.551 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.024 3.976 28 C -0.185 4.185 29 H 0.226 0.774 30 H 0.148 0.852 31 H 0.110 0.890 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.244 0.756 35 H 0.182 0.818 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.121 0.879 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.699 1.717 22.229 25.179 hybrid contribution -0.202 -1.238 0.029 1.255 sum -11.901 0.479 22.259 25.245 Atomic orbital electron populations 1.24719 0.95756 1.00802 1.02614 1.23441 0.94674 0.99811 0.98619 1.19011 0.83946 0.88967 0.99291 1.48209 1.62800 1.07805 1.12969 1.17821 0.79473 0.83269 0.84366 1.90838 1.42856 1.41209 1.63170 1.21563 0.97272 0.90208 0.95371 1.22082 0.97535 0.98354 0.95027 1.21668 0.94478 0.98718 0.93519 1.17144 1.00528 0.95321 0.89859 1.19729 1.00659 1.01947 0.93005 1.24970 0.98041 0.98505 0.96123 1.23050 0.94598 0.95745 0.90526 1.68146 1.08629 1.31645 1.07066 1.21305 0.96431 0.99560 0.77062 1.22735 0.92630 1.02919 1.01363 1.20945 0.97043 0.93914 0.83617 1.43988 0.99187 1.48176 1.40101 1.19158 1.06318 0.98961 1.13257 0.91972 1.25306 0.99036 0.96719 0.98096 1.69885 1.15197 1.27775 1.42245 0.86273 0.77536 0.80334 0.82560 1.21384 1.21723 1.20459 1.20848 0.87036 0.97695 0.91987 1.22412 0.96830 1.01308 0.97946 0.77374 0.85187 0.89023 0.82690 0.83742 0.75629 0.81814 0.90250 0.90064 0.93638 0.87946 0.96927 0.93623 0.96618 0.92674 0.93609 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.60 19.25 29.55 0.57 -2.03 16 2 C -0.16 -2.11 11.83 -37.12 -0.44 -2.55 16 3 C 0.21 2.64 5.53 -6.83 -0.04 2.60 16 4 N -0.59 -9.23 2.41 -170.41 -0.41 -9.64 16 5 C 0.57 9.34 6.99 -12.27 -0.09 9.26 16 6 O -0.51 -10.03 12.60 5.32 0.07 -9.96 16 7 C 0.09 1.25 6.58 -82.98 -0.55 0.70 16 8 C -0.11 -1.25 9.61 -39.13 -0.38 -1.62 16 9 C -0.06 -0.54 9.89 -38.93 -0.39 -0.92 16 10 C -0.03 -0.24 5.75 -106.68 -0.61 -0.86 16 11 C -0.15 -1.26 13.28 -38.83 -0.52 -1.78 16 12 C -0.16 -0.97 19.26 29.56 0.57 -0.40 16 13 C 0.12 1.14 10.92 -17.15 -0.19 0.95 16 14 N -0.44 -5.13 4.75 -9.49 -0.05 -5.18 16 15 C 0.16 2.87 2.50 -67.87 -0.17 2.70 16 16 C -0.16 -3.26 5.28 -26.60 -0.14 -3.40 16 17 C 0.17 4.25 5.26 -3.71 -0.02 4.23 16 18 N -0.59 -15.50 3.00 -172.32 -0.52 -16.02 16 19 C -0.25 -7.04 9.55 -15.06 -0.14 -7.18 16 20 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 21 C 0.01 0.19 5.32 -17.43 -0.09 0.09 16 22 N -0.91 -26.62 10.61 55.49 0.59 -26.03 16 23 Si 0.90 22.26 29.56 -169.99 -5.02 17.24 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.15 3.37 6.52 -3.71 -0.02 3.34 16 28 C -0.14 -2.85 5.27 -26.61 -0.14 -2.99 16 29 H 0.21 1.82 7.80 -54.10 -0.42 1.39 16 30 H 0.13 1.50 5.53 -51.93 -0.29 1.21 16 31 H 0.09 1.02 7.78 -51.92 -0.40 0.62 16 32 H 0.16 1.74 7.63 -52.48 -0.40 1.34 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.23 0.48 7.80 -54.09 -0.42 0.06 16 35 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 37 H 0.08 1.90 6.03 -51.93 -0.31 1.58 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 2.87 5.91 -51.93 -0.31 2.57 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 1.21 7.93 -51.93 -0.41 0.80 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 1.69 6.41 -51.93 -0.33 1.36 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -33.32 378.19 -8.20 -41.52 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.78 Total: 2.23 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -2.78 Total: 0.14 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.38 Total: -56.87 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.32 -8.20 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324438846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.757 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds