Wall clock time and date at job start Tue Mar 31 2020 21:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87032 * 2 1 4 4 C 1.54462 * 109.87582 * 239.00163 * 2 1 3 5 5 C 1.54388 * 102.87231 * 219.07187 * 4 2 1 6 6 C 1.54120 * 102.47900 * 34.64170 * 5 4 2 7 7 N 1.47075 * 109.88346 * 121.16869 * 2 1 3 8 8 C 1.34781 * 125.62570 * 298.47022 * 7 2 1 9 9 O 1.21282 * 120.00123 * 359.97438 * 8 7 2 10 10 C 1.50703 * 120.00064 * 180.02562 * 8 7 2 11 11 S 1.81393 * 109.47083 * 180.02562 * 10 8 7 12 12 C 1.81404 * 103.00130 * 179.97438 * 11 10 8 13 13 C 1.47202 * 109.47006 * 179.97438 * 12 11 10 14 14 N 8.85351 * 94.01278 * 94.98899 * 2 1 3 15 15 C 1.52102 * 110.51677 * 276.65517 * 5 4 2 16 16 C 1.53345 * 109.44867 * 295.88936 * 15 5 4 17 17 N 1.46925 * 108.69332 * 306.70930 * 16 15 5 18 18 C 1.36926 * 120.55572 * 234.36640 * 17 16 15 19 19 H 1.08004 * 120.00055 * 152.40476 * 18 17 16 20 20 C 1.38809 * 120.00586 * 332.40799 * 18 17 16 21 21 N 1.31614 * 120.00436 * 159.34504 * 20 18 17 22 22 Si 1.86799 * 119.99555 * 339.34718 * 20 18 17 23 23 H 1.48502 * 109.47452 * 93.23820 * 22 20 18 24 24 H 1.48502 * 109.47233 * 213.23813 * 22 20 18 25 25 H 1.48506 * 109.47380 * 333.23895 * 22 20 18 26 26 C 1.46939 * 118.88840 * 54.35044 * 17 16 15 27 27 C 1.52114 * 110.50361 * 152.62596 * 5 4 2 28 28 H 1.08998 * 109.47175 * 181.00231 * 1 2 3 29 29 H 1.09001 * 109.46710 * 300.99385 * 1 2 3 30 30 H 1.08993 * 109.47641 * 60.99667 * 1 2 3 31 31 H 1.09005 * 110.73286 * 100.72803 * 4 2 1 32 32 H 1.09001 * 110.73007 * 337.41890 * 4 2 1 33 33 H 1.08999 * 110.37930 * 82.74807 * 6 5 4 34 34 H 1.08999 * 110.37948 * 205.09762 * 6 5 4 35 35 H 1.08999 * 109.47006 * 299.99707 * 10 8 7 36 36 H 1.08999 * 109.47207 * 59.99446 * 10 8 7 37 37 H 1.08997 * 109.46724 * 300.00072 * 12 11 10 38 38 H 1.08997 * 109.47228 * 59.99587 * 12 11 10 39 39 H 1.08999 * 109.47288 * 55.88433 * 15 5 4 40 40 H 1.09002 * 109.47498 * 175.89602 * 15 5 4 41 41 H 1.08996 * 109.60048 * 186.94447 * 16 15 5 42 42 H 1.08998 * 109.73015 * 66.55109 * 16 15 5 43 43 H 0.97002 * 119.99893 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.60300 * 185.88496 * 26 17 16 45 45 H 1.08996 * 109.74270 * 65.47694 * 26 17 16 46 46 H 1.09000 * 109.47076 * 184.09878 * 27 5 4 47 47 H 1.09001 * 109.47122 * 304.10336 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0551 -0.7481 -1.2452 5 6 3.2709 -1.5233 -0.6933 6 6 2.8172 -1.8811 0.7354 7 7 2.0302 -0.7158 1.1834 8 6 1.8061 -0.3658 2.4656 9 8 1.1410 0.6163 2.7187 10 6 2.3829 -1.1941 3.5846 11 16 1.9074 -0.4714 5.1789 12 6 2.6811 -1.5886 6.3805 13 6 2.3808 -1.1256 7.7452 14 7 2.1495 -0.7681 8.7983 15 6 4.5016 -0.6301 -0.6586 16 6 4.8824 -0.2298 -2.0891 17 7 5.0137 -1.4480 -2.8998 18 6 6.1635 -1.6975 -3.6003 19 1 6.4549 -2.7150 -3.8152 20 6 6.9548 -0.6427 -4.0340 21 7 8.2200 -0.8485 -4.3328 22 14 6.2239 1.0690 -4.1937 23 1 6.4574 1.8261 -2.9377 24 1 6.8693 1.7791 -5.3270 25 1 4.7638 0.9625 -4.4432 26 6 3.8906 -2.3943 -2.9462 27 6 3.5157 -2.7825 -1.5109 28 1 -0.3633 -1.0275 0.0180 29 1 -0.3633 0.5292 0.8810 30 1 -0.3634 0.4982 -0.8987 31 1 2.3648 -0.0432 -2.0168 32 1 1.3011 -1.4353 -1.6289 33 1 2.1960 -2.7766 0.7233 34 1 3.6818 -2.0267 1.3830 35 1 1.9986 -2.2120 3.5185 36 1 3.4696 -1.2100 3.5021 37 1 2.2893 -2.5966 6.2440 38 1 3.7604 -1.5947 6.2285 39 1 4.2844 0.2653 -0.0762 40 1 5.3297 -1.1701 -0.1997 41 1 5.8313 0.3064 -2.0783 42 1 4.1065 0.4087 -2.5114 43 1 8.7729 -0.1113 -4.6355 44 1 4.1857 -3.2852 -3.5006 45 1 3.0351 -1.9269 -3.4338 46 1 4.3300 -3.3531 -1.0642 47 1 2.6105 -3.3895 -1.5230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479497269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:19 Heat of formation + Delta-G solvation = 24.326080 kcal Electronic energy + Delta-G solvation = -27477.145659 eV Core-core repulsion = 23787.188175 eV Total energy + Delta-G solvation = -3689.957484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83939 -38.80814 -37.09067 -36.35216 -33.27422 -32.55105 -31.26271 -30.83842 -30.60614 -29.61677 -27.43896 -26.24673 -23.99551 -23.10899 -22.22801 -21.18560 -19.53507 -18.49628 -18.41415 -17.37799 -16.75321 -16.57667 -16.37075 -15.76573 -15.47564 -15.20016 -14.82598 -14.53622 -14.27004 -14.10644 -13.80386 -13.64779 -13.47505 -13.32207 -13.22589 -12.94421 -12.67423 -12.50756 -12.41323 -12.38244 -12.21923 -11.98863 -11.94406 -11.78154 -11.15092 -10.95854 -10.82836 -10.63961 -10.54388 -10.50499 -10.14633 -10.09262 -9.91293 -9.72201 -9.49284 -8.83575 -8.66207 -8.17922 -7.03015 -6.00690 -3.36697 0.53527 1.78288 2.25115 2.34324 2.60704 2.78968 3.27068 3.29076 3.44132 3.45610 4.07478 4.40367 4.42133 4.47240 4.52175 4.62451 4.64592 4.76218 4.81245 4.89263 5.01012 5.19404 5.24677 5.34013 5.36400 5.44560 5.51994 5.59125 5.74607 5.79481 5.86587 5.95816 5.97304 6.08928 6.14012 6.23087 6.29003 6.32783 6.39553 6.56358 6.59288 6.60283 6.85989 6.98841 7.29078 7.88045 7.90650 8.27180 8.88485 9.66447 10.03726 11.15250 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002689 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.539251 B =10409.996058 C =10960.671613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.056 4.056 6 C 0.104 3.896 7 N -0.605 5.605 8 C 0.546 3.454 9 O -0.523 6.523 10 C -0.129 4.129 11 S -0.135 6.135 12 C -0.026 4.026 13 C 0.222 3.778 14 N -0.407 5.407 15 C -0.119 4.119 16 C 0.127 3.873 17 N -0.604 5.604 18 C -0.260 4.260 19 H 0.085 0.915 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.882 3.118 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.150 3.850 27 C -0.119 4.119 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.063 0.937 45 H 0.024 0.976 46 H 0.066 0.934 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 -5.338 13.738 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.159 4.159 5 C -0.057 4.057 6 C -0.019 4.019 7 N -0.340 5.340 8 C 0.332 3.668 9 O -0.399 6.399 10 C -0.280 4.280 11 S 0.089 5.911 12 C -0.176 4.176 13 C -0.097 4.097 14 N -0.085 5.085 15 C -0.158 4.158 16 C 0.002 3.998 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.103 0.897 20 C -0.176 4.176 21 N -0.550 5.550 22 Si 0.712 3.288 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.024 3.976 27 C -0.158 4.158 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.223 -3.313 15.638 21.397 hybrid contribution 0.711 -0.320 -0.855 1.157 sum -13.512 -3.632 14.783 20.355 Atomic orbital electron populations 1.22127 0.94767 1.02132 1.02852 1.21650 0.94319 0.96507 0.84043 0.90561 1.22845 0.97161 0.99726 0.96180 1.20984 0.95275 0.96876 0.92595 1.22533 0.94742 0.88037 0.96600 1.48522 1.52131 1.28850 1.04452 1.19096 0.80812 0.84963 0.81902 1.90755 1.39442 1.27039 1.82658 1.23586 1.06113 1.03649 0.94646 1.88034 1.69448 1.36967 0.96658 1.20821 1.06392 1.03190 0.87204 1.27737 0.94019 0.94175 0.93735 1.81282 1.07797 1.07443 1.12015 1.21841 0.96057 0.98296 0.99598 1.21365 0.99604 0.89705 0.89170 1.44330 1.14172 1.21496 1.52782 1.18901 0.96630 0.94096 1.29236 0.89734 1.25287 0.95748 0.97784 0.98734 1.69831 1.04859 1.32129 1.48225 0.86975 0.79679 0.85668 0.76467 1.21684 1.23181 1.19561 1.20922 0.90082 0.93760 0.92878 1.21847 1.00649 0.94990 0.98336 0.92603 0.91410 0.91614 0.89277 0.90379 0.91045 0.90509 0.86602 0.86419 0.85384 0.85299 0.92778 0.91427 0.90985 0.95624 0.92748 0.91814 0.95848 0.91527 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.09 37.16 0.34 -1.35 16 2 C 0.14 1.57 3.08 -66.85 -0.21 1.36 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.12 -1.40 4.45 -25.24 -0.11 -1.51 16 5 C -0.06 -0.68 0.55 -154.10 -0.08 -0.76 16 6 C 0.10 0.94 5.59 -2.87 -0.02 0.92 16 7 N -0.61 -6.38 3.06 -163.26 -0.50 -6.88 16 8 C 0.55 6.07 7.66 -10.98 -0.08 5.99 16 9 O -0.52 -7.80 14.91 5.56 0.08 -7.71 16 10 C -0.13 -0.88 5.44 36.01 0.20 -0.69 16 11 S -0.14 -1.14 20.83 -107.50 -2.24 -3.38 16 12 C -0.03 -0.11 6.42 34.37 0.22 0.11 16 13 C 0.22 1.79 15.44 -20.76 -0.32 1.47 16 14 N -0.41 -4.60 18.54 42.15 0.78 -3.82 16 15 C -0.12 -1.79 4.85 -27.01 -0.13 -1.92 16 16 C 0.13 2.50 3.89 -3.63 -0.01 2.48 16 17 N -0.60 -12.95 2.75 -172.13 -0.47 -13.42 16 18 C -0.26 -6.83 10.02 -15.07 -0.15 -6.98 16 19 H 0.09 2.38 8.06 -52.48 -0.42 1.96 16 20 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 21 N -0.91 -26.92 13.97 55.49 0.78 -26.15 16 22 Si 0.88 21.54 24.35 -169.99 -4.14 17.40 16 23 H -0.29 -6.85 6.63 56.52 0.37 -6.47 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.27 -6.43 6.64 56.52 0.38 -6.05 16 26 C 0.15 2.53 6.24 -3.63 -0.02 2.51 16 27 C -0.12 -1.51 4.84 -27.01 -0.13 -1.64 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.83 6.90 -51.93 -0.36 0.47 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.18 6.18 -51.93 -0.32 0.86 16 32 H 0.08 0.81 7.68 -51.93 -0.40 0.41 16 33 H 0.07 0.54 7.99 -51.93 -0.41 0.13 16 34 H 0.08 0.60 7.39 -51.93 -0.38 0.21 16 35 H 0.12 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.12 0.59 7.86 -51.93 -0.41 0.18 16 37 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.62 4.46 -51.93 -0.23 1.39 16 42 H 0.03 0.50 5.53 -51.93 -0.29 0.22 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.02 0.38 7.62 -51.93 -0.40 -0.01 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -33.67 378.54 -8.05 -41.71 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -7.43 Total: -4.02 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.61 Total: 0.55 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.58 Total: -50.26 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.24 Total: -3.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.67 -8.05 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479497269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.041 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds