Wall clock time and date at job start Tue Mar 31 2020 21:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87032 * 2 1 4 4 C 1.54462 * 109.87582 * 239.00163 * 2 1 3 5 5 C 1.54388 * 102.87231 * 219.07187 * 4 2 1 6 6 C 1.54120 * 102.47900 * 34.64170 * 5 4 2 7 7 N 1.47075 * 109.88346 * 121.16869 * 2 1 3 8 8 C 1.34781 * 125.62570 * 298.47022 * 7 2 1 9 9 O 1.21282 * 120.00123 * 359.97438 * 8 7 2 10 10 C 1.50703 * 120.00064 * 180.02562 * 8 7 2 11 11 S 1.81393 * 109.47083 * 180.02562 * 10 8 7 12 12 C 1.81404 * 103.00130 * 179.97438 * 11 10 8 13 13 C 1.47202 * 109.47006 * 179.97438 * 12 11 10 14 14 N 8.85351 * 94.01278 * 94.98899 * 2 1 3 15 15 C 1.52102 * 110.51677 * 276.65517 * 5 4 2 16 16 C 1.53345 * 109.44867 * 295.88936 * 15 5 4 17 17 N 1.46925 * 108.69332 * 306.70930 * 16 15 5 18 18 C 1.36926 * 120.55572 * 234.36640 * 17 16 15 19 19 H 1.08004 * 120.00055 * 152.40476 * 18 17 16 20 20 C 1.38809 * 120.00586 * 332.40799 * 18 17 16 21 21 N 1.31614 * 120.00436 * 159.34504 * 20 18 17 22 22 Si 1.86799 * 119.99555 * 339.34718 * 20 18 17 23 23 H 1.48502 * 109.47452 * 93.23820 * 22 20 18 24 24 H 1.48502 * 109.47233 * 213.23813 * 22 20 18 25 25 H 1.48506 * 109.47380 * 333.23895 * 22 20 18 26 26 C 1.46939 * 118.88840 * 54.35044 * 17 16 15 27 27 C 1.52114 * 110.50361 * 152.62596 * 5 4 2 28 28 H 1.08998 * 109.47175 * 181.00231 * 1 2 3 29 29 H 1.09001 * 109.46710 * 300.99385 * 1 2 3 30 30 H 1.08993 * 109.47641 * 60.99667 * 1 2 3 31 31 H 1.09005 * 110.73286 * 100.72803 * 4 2 1 32 32 H 1.09001 * 110.73007 * 337.41890 * 4 2 1 33 33 H 1.08999 * 110.37930 * 82.74807 * 6 5 4 34 34 H 1.08999 * 110.37948 * 205.09762 * 6 5 4 35 35 H 1.08999 * 109.47006 * 299.99707 * 10 8 7 36 36 H 1.08999 * 109.47207 * 59.99446 * 10 8 7 37 37 H 1.08997 * 109.46724 * 300.00072 * 12 11 10 38 38 H 1.08997 * 109.47228 * 59.99587 * 12 11 10 39 39 H 1.08999 * 109.47288 * 55.88433 * 15 5 4 40 40 H 1.09002 * 109.47498 * 175.89602 * 15 5 4 41 41 H 1.08996 * 109.60048 * 186.94447 * 16 15 5 42 42 H 1.08998 * 109.73015 * 66.55109 * 16 15 5 43 43 H 0.97002 * 119.99893 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.60300 * 185.88496 * 26 17 16 45 45 H 1.08996 * 109.74270 * 65.47694 * 26 17 16 46 46 H 1.09000 * 109.47076 * 184.09878 * 27 5 4 47 47 H 1.09001 * 109.47122 * 304.10336 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0551 -0.7481 -1.2452 5 6 3.2709 -1.5233 -0.6933 6 6 2.8172 -1.8811 0.7354 7 7 2.0302 -0.7158 1.1834 8 6 1.8061 -0.3658 2.4656 9 8 1.1410 0.6163 2.7187 10 6 2.3829 -1.1941 3.5846 11 16 1.9074 -0.4714 5.1789 12 6 2.6811 -1.5886 6.3805 13 6 2.3808 -1.1256 7.7452 14 7 2.1495 -0.7681 8.7983 15 6 4.5016 -0.6301 -0.6586 16 6 4.8824 -0.2298 -2.0891 17 7 5.0137 -1.4480 -2.8998 18 6 6.1635 -1.6975 -3.6003 19 1 6.4549 -2.7150 -3.8152 20 6 6.9548 -0.6427 -4.0340 21 7 8.2200 -0.8485 -4.3328 22 14 6.2239 1.0690 -4.1937 23 1 6.4574 1.8261 -2.9377 24 1 6.8693 1.7791 -5.3270 25 1 4.7638 0.9625 -4.4432 26 6 3.8906 -2.3943 -2.9462 27 6 3.5157 -2.7825 -1.5109 28 1 -0.3633 -1.0275 0.0180 29 1 -0.3633 0.5292 0.8810 30 1 -0.3634 0.4982 -0.8987 31 1 2.3648 -0.0432 -2.0168 32 1 1.3011 -1.4353 -1.6289 33 1 2.1960 -2.7766 0.7233 34 1 3.6818 -2.0267 1.3830 35 1 1.9986 -2.2120 3.5185 36 1 3.4696 -1.2100 3.5021 37 1 2.2893 -2.5966 6.2440 38 1 3.7604 -1.5947 6.2285 39 1 4.2844 0.2653 -0.0762 40 1 5.3297 -1.1701 -0.1997 41 1 5.8313 0.3064 -2.0783 42 1 4.1065 0.4087 -2.5114 43 1 8.7729 -0.1113 -4.6355 44 1 4.1857 -3.2852 -3.5006 45 1 3.0351 -1.9269 -3.4338 46 1 4.3300 -3.3531 -1.0642 47 1 2.6105 -3.3895 -1.5230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479497269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:18 Heat of formation + Delta-G solvation = 2.478682 kcal Electronic energy + Delta-G solvation = -27478.093033 eV Core-core repulsion = 23787.188175 eV Total energy + Delta-G solvation = -3690.904858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74656 -39.83015 -37.76992 -37.62071 -34.78913 -33.33939 -32.96017 -31.93508 -31.27027 -30.24485 -28.72552 -27.12976 -25.52593 -24.44094 -23.16566 -22.56515 -20.30363 -19.74864 -19.08201 -18.53427 -17.98177 -17.26163 -17.23633 -17.02021 -16.39066 -15.90604 -15.83653 -15.60683 -15.33654 -15.17912 -15.10796 -14.90723 -14.41420 -14.31895 -14.04439 -13.89238 -13.78935 -13.59542 -13.46613 -13.31527 -13.17773 -13.10496 -12.94275 -12.76310 -12.56155 -12.18819 -12.08296 -12.01828 -11.86698 -11.59302 -11.51935 -11.11583 -11.03568 -10.96370 -10.86630 -10.62824 -9.63889 -8.83976 -8.74082 -8.13600 -5.42670 0.03217 1.29846 1.31353 1.41387 1.48806 1.59094 1.68470 1.98330 2.14465 2.43031 2.83217 3.10460 3.37031 3.40965 3.53117 3.81878 3.83986 4.14518 4.18013 4.19999 4.25028 4.30558 4.35111 4.42921 4.44821 4.46895 4.55705 4.63379 4.75458 4.79425 4.82306 4.86682 4.91066 5.02006 5.09387 5.13350 5.23634 5.28254 5.30739 5.34383 5.43389 5.44985 5.64723 5.93099 6.17702 6.42803 6.52725 6.98642 7.11351 7.69440 8.09519 9.06460 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002689 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.539251 B =10409.996058 C =10960.671613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.052 0.948 4 C -0.115 4.115 5 C -0.057 4.057 6 C 0.111 3.889 7 N -0.605 5.605 8 C 0.537 3.463 9 O -0.570 6.570 10 C -0.108 4.108 11 S -0.218 6.218 12 C -0.004 4.004 13 C 0.246 3.754 14 N -0.475 5.475 15 C -0.107 4.107 16 C 0.122 3.878 17 N -0.617 5.617 18 C -0.237 4.237 19 H 0.056 0.944 20 C -0.037 4.037 21 N -0.958 5.958 22 Si 0.940 3.060 23 H -0.282 1.282 24 H -0.317 1.317 25 H -0.260 1.260 26 C 0.140 3.860 27 C -0.105 4.105 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.029 0.971 43 H 0.259 0.741 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 -7.572 14.979 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.034 3.966 3 H 0.070 0.930 4 C -0.153 4.153 5 C -0.058 4.058 6 C -0.011 4.011 7 N -0.338 5.338 8 C 0.326 3.674 9 O -0.450 6.450 10 C -0.258 4.258 11 S 0.006 5.994 12 C -0.154 4.154 13 C -0.072 4.072 14 N -0.154 5.154 15 C -0.146 4.146 16 C -0.003 4.003 17 N -0.342 5.342 18 C -0.367 4.367 19 H 0.074 0.926 20 C -0.231 4.231 21 N -0.605 5.605 22 Si 0.770 3.230 23 H -0.209 1.209 24 H -0.246 1.246 25 H -0.184 1.184 26 C 0.016 3.984 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.023 -5.571 16.899 23.945 hybrid contribution 1.227 0.309 -1.288 1.805 sum -14.797 -5.262 15.611 22.143 Atomic orbital electron populations 1.22032 0.94116 1.02707 1.02119 1.21545 0.94801 0.95583 0.84713 0.92977 1.22776 0.97403 0.99540 0.95548 1.20914 0.93817 0.95929 0.95093 1.22594 0.95932 0.88212 0.94347 1.48566 1.51977 1.29099 1.04153 1.19838 0.80135 0.84747 0.82698 1.90747 1.41581 1.29267 1.83371 1.23529 1.07299 1.03901 0.91084 1.88418 1.70942 1.40073 0.99988 1.21065 1.08057 1.03195 0.83053 1.28465 0.92093 0.92450 0.94192 1.81302 1.10122 1.09557 1.14427 1.21671 0.97631 0.99309 0.96013 1.21361 0.98050 0.88892 0.91954 1.44477 1.14160 1.22825 1.52750 1.18890 0.97615 0.92647 1.27554 0.92642 1.25855 0.96031 1.01223 1.00010 1.69955 1.06285 1.32965 1.51299 0.86019 0.79141 0.81845 0.75989 1.20899 1.24626 1.18433 1.21179 0.88659 0.92361 0.96228 1.21705 1.02305 0.95543 0.94866 0.91196 0.93627 0.90958 0.91413 0.88259 0.87787 0.88322 0.82872 0.83828 0.81409 0.81901 0.92145 0.91831 0.94269 0.95360 0.93223 0.92768 0.94731 0.91746 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.09 71.98 0.65 -2.19 16 2 C 0.14 2.78 3.08 45.38 0.14 2.92 16 3 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 4 C -0.11 -2.24 4.45 31.56 0.14 -2.10 16 5 C -0.06 -1.12 0.55 -51.92 -0.03 -1.15 16 6 C 0.11 1.37 5.59 86.55 0.48 1.85 16 7 N -0.60 -10.38 3.06 -788.82 -2.41 -12.79 16 8 C 0.54 10.29 7.66 87.66 0.67 10.97 16 9 O -0.57 -16.49 14.91 -3.04 -0.05 -16.53 16 10 C -0.11 -0.97 5.44 71.24 0.39 -0.58 16 11 S -0.22 -3.11 20.83 -56.49 -1.18 -4.29 16 12 C 0.00 -0.02 6.42 70.18 0.45 0.43 16 13 C 0.25 3.49 15.44 89.44 1.38 4.87 16 14 N -0.47 -10.54 18.54 20.01 0.37 -10.17 16 15 C -0.11 -2.97 4.85 30.41 0.15 -2.82 16 16 C 0.12 4.67 3.89 86.41 0.34 5.01 16 17 N -0.62 -25.90 2.75 -698.50 -1.92 -27.82 16 18 C -0.24 -12.62 10.02 84.03 0.84 -11.77 16 19 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16 20 C -0.04 -2.08 5.23 84.86 0.44 -1.64 16 21 N -0.96 -58.90 13.97 21.65 0.30 -58.60 16 22 Si 0.94 45.68 24.35 68.60 1.67 47.35 16 23 H -0.28 -13.16 6.63 99.48 0.66 -12.50 16 24 H -0.32 -15.94 7.11 99.48 0.71 -15.23 16 25 H -0.26 -11.95 6.64 99.48 0.66 -11.29 16 26 C 0.14 4.39 6.24 86.41 0.54 4.93 16 27 C -0.11 -2.19 4.84 30.42 0.15 -2.05 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.07 6.90 -2.39 -0.02 1.06 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.64 6.18 -2.38 -0.01 1.63 16 32 H 0.10 1.55 7.68 -2.39 -0.02 1.54 16 33 H 0.10 0.75 7.99 -2.39 -0.02 0.74 16 34 H 0.10 0.87 7.39 -2.39 -0.02 0.85 16 35 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.14 0.58 7.86 -2.39 -0.02 0.57 16 37 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.06 1.60 7.82 -2.39 -0.02 1.58 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.04 1.75 4.46 -2.39 -0.01 1.74 16 42 H 0.03 1.08 5.53 -2.39 -0.01 1.06 16 43 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.05 1.78 7.93 -2.39 -0.02 1.76 16 45 H 0.03 1.03 7.62 -2.39 -0.02 1.01 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 Total: -1.00 -80.87 378.54 4.40 -76.48 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: 0.87 Total: -0.30 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.74 Total: 6.67 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.66 Total: -109.38 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.35 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.18 Total: -4.29 kcal Total: -80.87 4.40 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479497269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.955 kcal (2) G-P(sol) polarization free energy of solvation -80.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds