Wall clock time and date at job start Tue Mar 31 2020 21:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.39988 * 2 1 4 4 C 1.55027 * 110.35153 * 122.25549 * 2 1 3 5 5 C 1.54535 * 101.52592 * 155.24400 * 4 2 1 6 6 C 1.53685 * 103.64453 * 325.16898 * 5 4 2 7 7 N 1.47185 * 107.11212 * 21.55166 * 6 5 4 8 8 C 1.34779 * 125.66099 * 181.45696 * 7 6 5 9 9 O 1.21275 * 119.99527 * 180.02562 * 8 7 6 10 10 C 1.50698 * 120.00016 * 0.05553 * 8 7 6 11 11 S 1.81395 * 109.47078 * 179.97438 * 10 8 7 12 12 C 1.81395 * 103.00224 * 179.97438 * 11 10 8 13 13 C 1.47195 * 109.47231 * 180.02562 * 12 11 10 14 14 N 8.85741 * 85.85363 * 255.36173 * 2 1 3 15 15 C 1.52277 * 110.16858 * 83.59522 * 5 4 2 16 16 C 1.53314 * 109.41594 * 62.85141 * 15 5 4 17 17 N 1.46923 * 108.71002 * 53.51685 * 16 15 5 18 18 C 1.36940 * 120.56420 * 125.76520 * 17 16 15 19 19 H 1.07997 * 120.00259 * 331.87851 * 18 17 16 20 20 C 1.38809 * 119.99866 * 151.87374 * 18 17 16 21 21 N 1.31627 * 120.00020 * 335.53592 * 20 18 17 22 22 Si 1.86798 * 120.00105 * 155.53616 * 20 18 17 23 23 H 1.48501 * 109.47393 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47155 * 300.00031 * 22 20 18 25 25 H 1.48501 * 109.47249 * 59.99742 * 22 20 18 26 26 C 1.46931 * 118.86973 * 306.04490 * 17 16 15 27 27 C 1.52267 * 110.17263 * 206.73258 * 5 4 2 28 28 H 1.08999 * 109.47141 * 297.74059 * 1 2 3 29 29 H 1.09002 * 109.46889 * 57.74563 * 1 2 3 30 30 H 1.09000 * 109.47215 * 177.74399 * 1 2 3 31 31 H 1.09002 * 111.01609 * 37.18909 * 4 2 1 32 32 H 1.08995 * 111.01757 * 273.30544 * 4 2 1 33 33 H 1.09004 * 109.90954 * 140.91700 * 6 5 4 34 34 H 1.08996 * 109.91055 * 262.18157 * 6 5 4 35 35 H 1.09002 * 109.47143 * 299.99430 * 10 8 7 36 36 H 1.09000 * 109.47410 * 59.99320 * 10 8 7 37 37 H 1.09003 * 109.47013 * 300.00051 * 12 11 10 38 38 H 1.09002 * 109.47195 * 59.99740 * 12 11 10 39 39 H 1.09005 * 109.47725 * 302.86830 * 15 5 4 40 40 H 1.08991 * 109.49288 * 182.84090 * 15 5 4 41 41 H 1.09004 * 109.59300 * 293.75322 * 16 15 5 42 42 H 1.08997 * 109.72465 * 173.37056 * 16 15 5 43 43 H 0.96998 * 119.99563 * 354.25156 * 21 20 18 44 44 H 1.09001 * 109.59612 * 173.72304 * 26 17 16 45 45 H 1.08997 * 109.59214 * 294.19012 * 26 17 16 46 46 H 1.08998 * 109.48476 * 57.12984 * 27 5 4 47 47 H 1.08997 * 109.47989 * 177.16071 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0691 -0.7757 1.2292 5 6 3.4657 -1.2112 0.7312 6 6 3.2493 -1.4792 -0.7665 7 7 2.0430 -0.7382 -1.1692 8 6 1.4982 -0.7341 -2.4019 9 8 0.4985 -0.0834 -2.6209 10 6 2.1309 -1.5387 -3.5080 11 16 1.1716 -1.3290 -5.0331 12 6 2.0737 -2.3544 -6.2270 13 6 1.4055 -2.2855 -7.5367 14 7 0.8896 -2.2325 -8.5475 15 6 4.4707 -0.0857 0.9360 16 6 4.6063 0.2102 2.4342 17 7 4.9209 -1.0421 3.1353 18 6 6.0188 -1.1275 3.9493 19 1 6.8813 -0.5058 3.7598 20 6 6.0230 -2.0132 5.0182 21 7 4.8858 -2.4050 5.5527 22 14 7.6426 -2.6489 5.6980 23 1 7.3759 -3.5742 6.8284 24 1 8.3780 -3.3723 4.6297 25 1 8.4616 -1.5060 6.1758 26 6 4.0410 -2.2030 2.9432 27 6 3.9057 -2.4814 1.4464 28 1 -0.3633 0.4783 0.9095 29 1 -0.3633 0.5485 -0.8691 30 1 -0.3633 -1.0269 -0.0405 31 1 1.4451 -1.6419 1.4493 32 1 2.1501 -0.1232 2.0985 33 1 4.1093 -1.1252 -1.3351 34 1 3.1032 -2.5460 -0.9354 35 1 3.1519 -1.1933 -3.6702 36 1 2.1438 -2.5924 -3.2292 37 1 3.0959 -1.9879 -6.3213 38 1 2.0888 -3.3877 -5.8802 39 1 4.1246 0.8092 0.4186 40 1 5.4391 -0.3854 0.5356 41 1 3.6681 0.6155 2.8131 42 1 5.4077 0.9311 2.5958 43 1 4.0499 -2.0125 5.2561 44 1 4.4714 -3.0737 3.4380 45 1 3.0579 -1.9899 3.3627 46 1 3.1641 -3.2641 1.2866 47 1 4.8681 -2.8063 1.0512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479497270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:22 Heat of formation + Delta-G solvation = 18.012714 kcal Electronic energy + Delta-G solvation = -27301.752649 eV Core-core repulsion = 23611.521397 eV Total energy + Delta-G solvation = -3690.231252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79388 -38.78499 -37.10404 -36.25770 -33.42137 -32.55566 -31.07538 -30.83900 -30.08062 -29.51769 -27.09122 -26.11486 -24.02381 -22.82315 -22.06395 -21.04059 -19.55541 -18.41728 -18.31148 -17.39286 -17.01198 -16.68582 -16.43450 -15.81199 -15.35871 -14.80770 -14.67060 -14.40813 -14.28211 -14.00013 -13.73235 -13.58431 -13.36294 -13.32399 -13.21284 -12.84685 -12.75528 -12.54571 -12.47961 -12.32855 -12.08761 -11.91511 -11.75349 -11.21312 -11.02255 -10.91301 -10.73115 -10.55123 -10.52254 -10.32240 -10.10543 -9.97672 -9.80552 -9.77147 -9.31258 -8.80007 -8.43021 -8.19027 -6.93960 -6.12315 -3.29912 0.52642 1.77464 2.23505 2.34806 2.59698 2.80800 3.27625 3.45218 3.47531 3.65979 4.09508 4.40544 4.47794 4.51485 4.53855 4.61068 4.70602 4.78597 4.86364 5.05533 5.13298 5.26539 5.30139 5.44249 5.49116 5.51284 5.62664 5.69577 5.83957 5.86249 5.97596 6.06187 6.10552 6.17516 6.25639 6.37640 6.39118 6.45582 6.49255 6.64172 6.73457 6.97297 6.97425 7.11737 7.32580 7.90264 7.94878 8.52095 9.05707 9.78435 10.22606 11.15902 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.002355 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.486222 B =11886.300341 C =12681.625916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.055 4.055 6 C 0.104 3.896 7 N -0.607 5.607 8 C 0.546 3.454 9 O -0.521 6.521 10 C -0.129 4.129 11 S -0.135 6.135 12 C -0.026 4.026 13 C 0.222 3.778 14 N -0.407 5.407 15 C -0.119 4.119 16 C 0.147 3.853 17 N -0.597 5.597 18 C -0.349 4.349 19 H 0.055 0.945 20 C -0.024 4.024 21 N -0.915 5.915 22 Si 1.063 2.937 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.152 3.848 27 C -0.121 4.121 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.269 0.731 44 H 0.079 0.921 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -0.233 -16.647 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.056 4.056 6 C -0.019 4.019 7 N -0.341 5.341 8 C 0.332 3.668 9 O -0.398 6.398 10 C -0.280 4.280 11 S 0.089 5.911 12 C -0.176 4.176 13 C -0.097 4.097 14 N -0.085 5.085 15 C -0.159 4.159 16 C 0.021 3.979 17 N -0.321 5.321 18 C -0.479 4.479 19 H 0.073 0.927 20 C -0.226 4.226 21 N -0.555 5.555 22 Si 0.893 3.107 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.026 3.974 27 C -0.160 4.160 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.179 -0.246 -17.380 18.137 hybrid contribution 0.912 0.230 -0.486 1.059 sum -4.267 -0.015 -17.866 18.369 Atomic orbital electron populations 1.22132 0.93947 1.02672 1.03159 1.22021 0.94930 0.95539 0.84012 0.90577 1.22983 0.95452 1.00550 0.96809 1.20938 0.95417 0.97659 0.91568 1.22313 0.86573 0.96046 0.96932 1.48574 1.28476 1.48316 1.08749 1.19076 0.84062 0.81899 0.81723 1.90716 1.24783 1.43146 1.81172 1.23596 1.03669 1.05269 0.95484 1.88016 1.37989 1.62373 1.02678 1.20821 1.01864 1.06218 0.88736 1.27739 0.94118 0.94057 0.93749 1.81286 1.07886 1.07649 1.11717 1.21922 0.97893 0.96205 0.99843 1.20937 0.97884 0.89607 0.89446 1.44079 1.29809 1.05424 1.52790 1.19954 0.92814 1.27028 1.08062 0.92740 1.25831 1.03911 0.99511 0.93326 1.70796 0.98886 1.45937 1.39910 0.83549 0.74682 0.76439 0.76050 1.21112 1.22088 1.22002 1.20856 0.93323 0.92188 0.91014 1.21913 1.00286 0.94250 0.99588 0.91958 0.90011 0.92744 0.90675 0.89019 0.91261 0.91248 0.86602 0.86600 0.85372 0.85360 0.92918 0.91952 0.96388 0.92653 0.92033 0.90238 0.96385 0.92813 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.60 37.16 0.32 -1.61 16 2 C 0.14 1.64 3.44 -66.32 -0.23 1.41 16 3 H 0.08 0.93 7.74 -51.93 -0.40 0.53 16 4 C -0.12 -1.55 4.35 -24.85 -0.11 -1.66 16 5 C -0.06 -0.72 0.55 -154.09 -0.09 -0.81 16 6 C 0.10 1.06 5.67 -3.31 -0.02 1.04 16 7 N -0.61 -6.69 3.25 -163.20 -0.53 -7.22 16 8 C 0.55 6.12 7.65 -10.99 -0.08 6.04 16 9 O -0.52 -7.61 13.59 5.56 0.08 -7.54 16 10 C -0.13 -0.90 5.62 36.00 0.20 -0.70 16 11 S -0.13 -1.12 20.83 -107.50 -2.24 -3.36 16 12 C -0.03 -0.11 6.42 34.37 0.22 0.11 16 13 C 0.22 1.76 15.44 -20.76 -0.32 1.44 16 14 N -0.41 -4.54 18.54 42.16 0.78 -3.76 16 15 C -0.12 -1.74 4.74 -26.94 -0.13 -1.86 16 16 C 0.15 2.75 6.19 -3.65 -0.02 2.73 16 17 N -0.60 -13.53 2.84 -172.45 -0.49 -14.02 16 18 C -0.35 -9.14 9.48 -15.06 -0.14 -9.28 16 19 H 0.05 1.44 7.94 -52.49 -0.42 1.03 16 20 C -0.02 -0.64 4.69 -17.43 -0.08 -0.72 16 21 N -0.92 -26.08 12.41 55.49 0.69 -25.39 16 22 Si 1.06 24.07 29.98 -169.99 -5.10 18.97 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.15 3.15 4.37 -3.89 -0.02 3.14 16 27 C -0.12 -1.88 4.70 -27.18 -0.13 -2.01 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.11 6.09 -51.93 -0.32 0.79 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 32 H 0.09 1.31 6.08 -51.93 -0.32 0.99 16 33 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 34 H 0.07 0.62 7.78 -51.93 -0.40 0.21 16 35 H 0.12 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.12 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 38 H 0.13 0.20 8.14 -51.92 -0.42 -0.23 16 39 H 0.05 0.68 7.47 -51.93 -0.39 0.30 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.34 6.47 -51.93 -0.34 0.00 16 42 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 43 H 0.27 7.68 6.71 -40.82 -0.27 7.41 16 44 H 0.08 1.92 6.30 -51.93 -0.33 1.59 16 45 H 0.02 0.38 7.30 -51.93 -0.38 0.00 16 46 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -32.43 381.47 -9.07 -41.50 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.39 Total: -2.21 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.62 Total: -2.73 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.45 Total: -50.39 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.54 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.10 Total: 18.97 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.24 Total: -3.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.43 -9.07 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479497270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.515 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds