Wall clock time and date at job start Tue Mar 31 2020 19:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 N 1.46497 * 109.46666 * 119.99792 * 2 1 3 5 5 C 1.36938 * 120.00106 * 294.90032 * 4 2 1 6 6 H 1.07995 * 119.99938 * 37.15131 * 5 4 2 7 7 C 1.38820 * 119.99930 * 217.14732 * 5 4 2 8 8 N 1.31616 * 119.99764 * 21.27002 * 7 5 4 9 9 Si 1.86795 * 119.99973 * 201.26771 * 7 5 4 10 10 H 1.48503 * 109.46969 * 90.00077 * 9 7 5 11 11 H 1.48498 * 109.47305 * 210.00206 * 9 7 5 12 12 H 1.48500 * 109.47320 * 330.00361 * 9 7 5 13 13 C 1.46503 * 119.99708 * 114.90579 * 4 2 1 14 14 C 1.52999 * 109.46907 * 269.99696 * 13 4 2 15 15 C 1.52999 * 109.46985 * 180.02562 * 14 13 4 16 16 N 1.46498 * 109.47385 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00329 * 180.02562 * 16 15 14 18 18 O 1.21685 * 119.99782 * 359.97438 * 17 16 15 19 19 C 1.46687 * 120.00121 * 180.02562 * 17 16 15 20 20 C 1.35659 * 126.13024 * 359.97438 * 19 17 16 21 21 N 1.30936 * 114.19271 * 180.02562 * 20 19 17 22 22 C 1.29426 * 117.36342 * 0.02562 * 21 20 19 23 23 C 1.50704 * 124.80516 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.49939 * 8.64261 * 23 22 21 25 25 C 1.52997 * 117.49822 * 300.02034 * 23 22 21 26 26 S 1.70955 * 110.39359 * 359.97438 * 22 21 20 27 27 H 1.09005 * 109.47192 * 303.31184 * 1 2 3 28 28 H 1.09001 * 109.47301 * 63.31130 * 1 2 3 29 29 H 1.08998 * 109.47397 * 183.31013 * 1 2 3 30 30 H 1.08993 * 109.47163 * 240.00056 * 2 1 3 31 31 H 1.08998 * 109.46717 * 181.62101 * 3 2 1 32 32 H 1.09000 * 109.47350 * 301.62011 * 3 2 1 33 33 H 1.09000 * 109.47136 * 61.61449 * 3 2 1 34 34 H 0.97001 * 119.99753 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46883 * 149.99677 * 13 4 2 36 36 H 1.09002 * 109.47338 * 29.99791 * 13 4 2 37 37 H 1.08988 * 109.47235 * 59.99993 * 14 13 4 38 38 H 1.08996 * 109.46883 * 299.99541 * 14 13 4 39 39 H 1.09005 * 109.47498 * 59.99773 * 15 14 13 40 40 H 1.09002 * 109.47122 * 300.00009 * 15 14 13 41 41 H 0.97005 * 119.99689 * 359.97438 * 16 15 14 42 42 H 1.08000 * 122.90267 * 0.02562 * 20 19 17 43 43 H 1.09004 * 115.55192 * 154.34998 * 23 22 21 44 44 H 1.09004 * 117.49920 * 0.02562 * 24 23 22 45 45 H 1.08998 * 117.49794 * 145.01933 * 24 23 22 46 46 H 1.09001 * 117.50248 * 214.98113 * 25 23 22 47 47 H 1.09004 * 117.49784 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7756 -0.1650 2.4372 6 1 0.8338 0.3219 2.6427 7 6 2.7403 -0.2581 3.4311 8 7 4.0013 -0.4529 3.1081 9 14 2.2488 -0.1068 5.2269 10 1 1.9206 -1.4514 5.7651 11 1 3.3746 0.4750 6.0010 12 1 1.0603 0.7761 5.3421 13 6 2.7661 -1.9435 1.0647 14 6 1.7929 -3.1237 1.0929 15 6 2.5739 -4.4321 0.9562 16 7 1.6422 -5.5623 0.9838 17 6 2.1081 -6.8225 0.8787 18 8 3.3027 -7.0217 0.7603 19 6 1.1750 -7.9541 0.9057 20 6 -0.1735 -7.8761 1.0314 21 7 -0.7807 -9.0361 1.0281 22 6 -0.0435 -10.0932 0.9092 23 6 -0.5644 -11.5071 0.8861 24 6 -2.0801 -11.7004 0.8083 25 6 -1.3373 -11.9953 2.1129 26 16 1.6050 -9.6585 0.7820 27 1 -0.3634 0.5644 0.8588 28 1 -0.3634 0.4616 -0.9182 29 1 -0.3634 -1.0259 0.0593 30 1 1.8933 -0.5138 -0.8899 31 1 3.1296 1.4426 -0.0291 32 1 1.6532 1.9647 -0.8751 33 1 1.7005 1.9479 0.9041 34 1 4.6754 -0.5176 3.8026 35 1 3.4712 -2.0341 1.8910 36 1 3.3108 -1.9441 0.1205 37 1 1.0878 -3.0330 0.2667 38 1 1.2483 -3.1230 2.0371 39 1 3.2788 -4.5226 1.7827 40 1 3.1189 -4.4330 0.0122 41 1 0.6899 -5.4035 1.0785 42 1 -0.7006 -6.9382 1.1259 43 1 0.0629 -12.2308 0.3657 44 1 -2.7006 -10.8048 0.7734 45 1 -2.4503 -12.5513 0.2365 46 1 -1.2188 -13.0403 2.3995 47 1 -1.4686 -11.2939 2.9370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481357067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:24 Heat of formation + Delta-G solvation = 43.158234 kcal Electronic energy + Delta-G solvation = -25981.326986 eV Core-core repulsion = 22292.186126 eV Total energy + Delta-G solvation = -3689.140860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43068 -39.28182 -37.24316 -36.79468 -35.06054 -32.57297 -31.86457 -30.52353 -28.68784 -26.90982 -26.18898 -25.22003 -23.46023 -23.01500 -22.80091 -21.37580 -20.91578 -19.55950 -19.22031 -18.55904 -17.19482 -16.45564 -16.13047 -15.63539 -15.41680 -15.05790 -14.85740 -14.61783 -14.48806 -14.13514 -13.89818 -13.58398 -13.32303 -12.87489 -12.64974 -12.42031 -11.96072 -11.84271 -11.74154 -11.50764 -11.45677 -11.30862 -11.28284 -11.08787 -10.98512 -10.78355 -10.66939 -10.49108 -10.35850 -10.16998 -9.93581 -9.75622 -9.70054 -9.59760 -9.50835 -9.14869 -8.88494 -8.47514 -6.56096 -5.77674 -3.35546 -0.01953 0.85898 1.41751 2.17552 3.10677 3.27051 3.35585 3.38734 3.43843 3.43920 3.66321 4.29574 4.37212 4.47122 4.51626 4.67844 4.87073 4.97021 5.20779 5.21515 5.33919 5.35994 5.54715 5.62565 5.69815 5.75564 5.79660 5.93925 6.00167 6.16202 6.28612 6.35379 6.38167 6.44111 6.64600 6.70801 6.72131 6.78511 6.79085 7.09956 7.20960 7.31185 7.33846 7.48649 7.68134 7.84606 8.14751 8.53594 9.20553 9.83368 10.41860 11.22133 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.002188 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.432750 B =12791.179346 C =13122.268788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.145 4.145 4 N -0.579 5.579 5 C -0.251 4.251 6 H 0.060 0.940 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.150 3.850 14 C -0.146 4.146 15 C 0.122 3.878 16 N -0.710 5.710 17 C 0.588 3.412 18 O -0.538 6.538 19 C -0.293 4.293 20 C 0.093 3.907 21 N -0.479 5.479 22 C 0.067 3.933 23 C -0.103 4.103 24 C -0.148 4.148 25 C -0.154 4.154 26 S 0.235 5.765 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.025 0.975 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.182 0.818 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 -20.648 -5.978 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.381 4.381 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.023 3.977 14 C -0.186 4.186 15 C -0.001 4.001 16 N -0.361 5.361 17 C 0.373 3.627 18 O -0.417 6.417 19 C -0.418 4.418 20 C -0.065 4.065 21 N -0.193 5.193 22 C -0.207 4.207 23 C -0.124 4.124 24 C -0.187 4.187 25 C -0.193 4.193 26 S 0.495 5.505 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.234 0.766 42 H 0.199 0.801 43 H 0.147 0.853 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.193 -21.389 -6.047 23.689 hybrid contribution -1.158 1.086 1.152 1.961 sum -9.351 -20.302 -4.895 22.882 Atomic orbital electron populations 1.22207 0.98921 1.00472 0.99726 1.20415 0.91941 0.92334 0.89826 1.22035 1.00831 0.97836 0.99716 1.43856 1.64330 1.20450 1.01244 1.18909 0.97473 1.34520 0.87223 0.92250 1.25161 0.94540 1.00525 0.98663 1.69979 0.99381 1.51610 1.31896 0.86449 0.77682 0.77857 0.85735 1.21415 1.21821 1.20372 1.20818 0.93058 0.82843 1.00978 1.22520 1.00489 0.94014 1.01626 1.21573 0.92172 0.84181 1.02197 1.45956 1.11513 1.05333 1.73311 1.16728 0.86812 0.81979 0.77231 1.90850 1.15442 1.85140 1.50223 1.25887 0.98513 0.98873 1.18528 1.22149 0.89555 0.96910 0.97892 1.66009 1.38709 0.97466 1.17113 1.26507 0.94423 0.97993 1.01737 1.20560 0.96561 0.89328 1.05984 1.23028 0.91710 1.04037 0.99880 1.23071 1.02079 1.02347 0.91798 1.84035 1.06555 0.96855 1.63068 0.92967 0.94636 0.93790 0.93725 0.93331 0.95213 0.92363 0.93588 0.88491 0.95678 0.93141 0.91571 0.91129 0.91621 0.76636 0.80105 0.85269 0.87232 0.87934 0.87676 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.19 37.16 0.34 -2.41 16 2 C 0.16 3.27 3.37 -67.93 -0.23 3.04 16 3 C -0.15 -2.90 9.11 37.16 0.34 -2.56 16 4 N -0.58 -13.43 2.37 -165.66 -0.39 -13.82 16 5 C -0.25 -6.46 8.04 -15.06 -0.12 -6.58 16 6 H 0.06 1.55 7.14 -52.49 -0.37 1.18 16 7 C 0.01 0.30 4.96 -17.43 -0.09 0.22 16 8 N -0.89 -24.72 11.43 55.49 0.63 -24.09 16 9 Si 0.89 21.13 29.60 -169.99 -5.03 16.10 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 C 0.15 3.28 5.28 -4.04 -0.02 3.26 16 14 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 15 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 16 N -0.71 -9.96 5.54 -61.62 -0.34 -10.30 16 17 C 0.59 8.99 7.79 -12.85 -0.10 8.89 16 18 O -0.54 -10.12 16.97 5.20 0.09 -10.03 16 19 C -0.29 -3.71 6.48 -37.09 -0.24 -3.95 16 20 C 0.09 1.03 10.93 -18.86 -0.21 0.83 16 21 N -0.48 -5.37 9.98 -11.50 -0.11 -5.48 16 22 C 0.07 0.66 6.96 -13.29 -0.09 0.57 16 23 C -0.10 -0.72 6.28 -91.77 -0.58 -1.30 16 24 C -0.15 -0.91 10.12 -26.73 -0.27 -1.18 16 25 C -0.15 -0.92 10.23 -26.73 -0.27 -1.19 16 26 S 0.23 2.51 23.01 -107.50 -2.47 0.04 16 27 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.86 7.77 -51.93 -0.40 0.45 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.25 7.50 -51.93 -0.39 0.86 16 34 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.10 2.44 5.48 -51.93 -0.28 2.16 16 36 H 0.02 0.53 7.88 -51.93 -0.41 0.12 16 37 H 0.05 0.84 8.14 -51.94 -0.42 0.41 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.40 4.52 7.18 -40.82 -0.29 4.23 16 42 H 0.18 1.55 7.15 -52.49 -0.38 1.18 16 43 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.11 0.84 7.84 -51.93 -0.41 0.43 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -30.76 401.56 -10.82 -41.58 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.52 Total: 3.09 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.71 Total: -3.14 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.21 Total: -53.69 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.47 Total: 0.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.76 -10.82 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481357067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.738 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds