Wall clock time and date at job start Tue Mar 31 2020 19:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 N 1.46497 * 109.46666 * 119.99792 * 2 1 3 5 5 C 1.36938 * 120.00106 * 294.90032 * 4 2 1 6 6 H 1.07995 * 119.99938 * 37.15131 * 5 4 2 7 7 C 1.38820 * 119.99930 * 217.14732 * 5 4 2 8 8 N 1.31616 * 119.99764 * 21.27002 * 7 5 4 9 9 Si 1.86795 * 119.99973 * 201.26771 * 7 5 4 10 10 H 1.48503 * 109.46969 * 90.00077 * 9 7 5 11 11 H 1.48498 * 109.47305 * 210.00206 * 9 7 5 12 12 H 1.48500 * 109.47320 * 330.00361 * 9 7 5 13 13 C 1.46503 * 119.99708 * 114.90579 * 4 2 1 14 14 C 1.52999 * 109.46907 * 269.99696 * 13 4 2 15 15 C 1.52999 * 109.46985 * 180.02562 * 14 13 4 16 16 N 1.46498 * 109.47385 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00329 * 180.02562 * 16 15 14 18 18 O 1.21685 * 119.99782 * 359.97438 * 17 16 15 19 19 C 1.46687 * 120.00121 * 180.02562 * 17 16 15 20 20 C 1.35659 * 126.13024 * 359.97438 * 19 17 16 21 21 N 1.30936 * 114.19271 * 180.02562 * 20 19 17 22 22 C 1.29426 * 117.36342 * 0.02562 * 21 20 19 23 23 C 1.50704 * 124.80516 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.49939 * 8.64261 * 23 22 21 25 25 C 1.52997 * 117.49822 * 300.02034 * 23 22 21 26 26 S 1.70955 * 110.39359 * 359.97438 * 22 21 20 27 27 H 1.09005 * 109.47192 * 303.31184 * 1 2 3 28 28 H 1.09001 * 109.47301 * 63.31130 * 1 2 3 29 29 H 1.08998 * 109.47397 * 183.31013 * 1 2 3 30 30 H 1.08993 * 109.47163 * 240.00056 * 2 1 3 31 31 H 1.08998 * 109.46717 * 181.62101 * 3 2 1 32 32 H 1.09000 * 109.47350 * 301.62011 * 3 2 1 33 33 H 1.09000 * 109.47136 * 61.61449 * 3 2 1 34 34 H 0.97001 * 119.99753 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46883 * 149.99677 * 13 4 2 36 36 H 1.09002 * 109.47338 * 29.99791 * 13 4 2 37 37 H 1.08988 * 109.47235 * 59.99993 * 14 13 4 38 38 H 1.08996 * 109.46883 * 299.99541 * 14 13 4 39 39 H 1.09005 * 109.47498 * 59.99773 * 15 14 13 40 40 H 1.09002 * 109.47122 * 300.00009 * 15 14 13 41 41 H 0.97005 * 119.99689 * 359.97438 * 16 15 14 42 42 H 1.08000 * 122.90267 * 0.02562 * 20 19 17 43 43 H 1.09004 * 115.55192 * 154.34998 * 23 22 21 44 44 H 1.09004 * 117.49920 * 0.02562 * 24 23 22 45 45 H 1.08998 * 117.49794 * 145.01933 * 24 23 22 46 46 H 1.09001 * 117.50248 * 214.98113 * 25 23 22 47 47 H 1.09004 * 117.49784 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7756 -0.1650 2.4372 6 1 0.8338 0.3219 2.6427 7 6 2.7403 -0.2581 3.4311 8 7 4.0013 -0.4529 3.1081 9 14 2.2488 -0.1068 5.2269 10 1 1.9206 -1.4514 5.7651 11 1 3.3746 0.4750 6.0010 12 1 1.0603 0.7761 5.3421 13 6 2.7661 -1.9435 1.0647 14 6 1.7929 -3.1237 1.0929 15 6 2.5739 -4.4321 0.9562 16 7 1.6422 -5.5623 0.9838 17 6 2.1081 -6.8225 0.8787 18 8 3.3027 -7.0217 0.7603 19 6 1.1750 -7.9541 0.9057 20 6 -0.1735 -7.8761 1.0314 21 7 -0.7807 -9.0361 1.0281 22 6 -0.0435 -10.0932 0.9092 23 6 -0.5644 -11.5071 0.8861 24 6 -2.0801 -11.7004 0.8083 25 6 -1.3373 -11.9953 2.1129 26 16 1.6050 -9.6585 0.7820 27 1 -0.3634 0.5644 0.8588 28 1 -0.3634 0.4616 -0.9182 29 1 -0.3634 -1.0259 0.0593 30 1 1.8933 -0.5138 -0.8899 31 1 3.1296 1.4426 -0.0291 32 1 1.6532 1.9647 -0.8751 33 1 1.7005 1.9479 0.9041 34 1 4.6754 -0.5176 3.8026 35 1 3.4712 -2.0341 1.8910 36 1 3.3108 -1.9441 0.1205 37 1 1.0878 -3.0330 0.2667 38 1 1.2483 -3.1230 2.0371 39 1 3.2788 -4.5226 1.7827 40 1 3.1189 -4.4330 0.0122 41 1 0.6899 -5.4035 1.0785 42 1 -0.7006 -6.9382 1.1259 43 1 0.0629 -12.2308 0.3657 44 1 -2.7006 -10.8048 0.7734 45 1 -2.4503 -12.5513 0.2365 46 1 -1.2188 -13.0403 2.3995 47 1 -1.4686 -11.2939 2.9370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481357067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:23 Heat of formation + Delta-G solvation = 25.498497 kcal Electronic energy + Delta-G solvation = -25982.092769 eV Core-core repulsion = 22292.186126 eV Total energy + Delta-G solvation = -3689.906644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36602 -40.37986 -38.51053 -37.81258 -36.44203 -34.29677 -33.40790 -31.70142 -30.25463 -27.85389 -27.71046 -26.88239 -24.92488 -23.94060 -23.25872 -22.43122 -22.40492 -21.29591 -20.29282 -19.35078 -18.18877 -18.16639 -17.10250 -16.96907 -16.72558 -16.47122 -16.00662 -15.83865 -15.57075 -15.36483 -15.19352 -14.85480 -14.64794 -14.53698 -14.04539 -13.33837 -13.27014 -13.21180 -13.15609 -12.85272 -12.73827 -12.63463 -12.52926 -12.37493 -12.35836 -12.13525 -11.95835 -11.87330 -11.71827 -11.69974 -11.36832 -11.31876 -11.19172 -10.68303 -10.60124 -10.46165 -10.25648 -9.84239 -8.48499 -7.75623 -5.36870 -0.89374 0.01465 0.58126 1.27124 1.45066 1.48773 1.55042 2.02195 2.10674 2.53629 2.81452 3.00785 3.30194 3.61235 3.64637 3.71163 3.87415 4.04451 4.07166 4.16944 4.27170 4.30471 4.37137 4.51749 4.64224 4.73677 4.80246 4.81610 4.85614 4.92900 4.94998 4.98869 5.09887 5.14098 5.16614 5.21734 5.23940 5.29356 5.32274 5.49579 5.64269 5.69664 5.76630 5.91393 6.33649 6.48290 6.54547 6.99832 7.24789 7.95835 8.47576 9.19520 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.002188 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.432750 B =12791.179346 C =13122.268788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.593 5.593 5 C -0.242 4.242 6 H 0.056 0.944 7 C -0.038 4.038 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.270 1.270 13 C 0.149 3.851 14 C -0.122 4.122 15 C 0.135 3.865 16 N -0.700 5.700 17 C 0.591 3.409 18 O -0.582 6.582 19 C -0.327 4.327 20 C 0.111 3.889 21 N -0.498 5.498 22 C 0.083 3.917 23 C -0.119 4.119 24 C -0.143 4.143 25 C -0.146 4.146 26 S 0.235 5.765 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.247 0.753 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.414 0.586 42 H 0.203 0.797 43 H 0.153 0.847 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 -22.267 -6.924 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.196 4.196 4 N -0.314 5.314 5 C -0.372 4.372 6 H 0.074 0.926 7 C -0.235 4.235 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.215 1.215 11 H -0.227 1.227 12 H -0.195 1.195 13 C 0.022 3.978 14 C -0.162 4.162 15 C 0.010 3.990 16 N -0.352 5.352 17 C 0.377 3.623 18 O -0.464 6.464 19 C -0.452 4.452 20 C -0.049 4.049 21 N -0.213 5.213 22 C -0.190 4.190 23 C -0.140 4.140 24 C -0.182 4.182 25 C -0.185 4.185 26 S 0.496 5.504 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.251 0.749 42 H 0.220 0.780 43 H 0.171 0.829 44 H 0.112 0.888 45 H 0.144 0.856 46 H 0.148 0.852 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.876 -23.003 -7.006 26.392 hybrid contribution -0.419 1.533 1.372 2.099 sum -11.295 -21.471 -5.634 24.906 Atomic orbital electron populations 1.22052 0.96564 1.00906 1.00598 1.20668 0.93657 0.92087 0.89020 1.21956 0.99263 0.98132 1.00286 1.44083 1.64407 1.21288 1.01572 1.19038 0.96824 1.33045 0.88334 0.92645 1.25740 0.94573 1.01545 1.01656 1.70113 1.00116 1.53743 1.32270 0.85603 0.77163 0.77603 0.82125 1.21519 1.22713 1.19469 1.20718 0.93437 0.84107 0.99582 1.22146 0.99496 0.92845 1.01736 1.21235 0.91992 0.84461 1.01265 1.45725 1.11945 1.04562 1.72926 1.17006 0.86607 0.82607 0.76078 1.90821 1.17365 1.85772 1.52403 1.25599 0.98674 0.98841 1.22069 1.22511 0.88987 0.97849 0.95514 1.66134 1.38842 0.97772 1.18538 1.27115 0.93890 0.99091 0.98921 1.20897 0.97593 0.88057 1.07477 1.23095 0.90587 1.04227 1.00266 1.23155 1.00982 1.03332 0.91037 1.84010 1.07275 0.95892 1.63202 0.94495 0.91599 0.93284 0.92404 0.95728 0.91634 0.94504 0.94342 0.92021 0.95459 0.91094 0.92739 0.93407 0.91673 0.74861 0.77996 0.82949 0.88846 0.85567 0.85198 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.19 71.98 0.66 -4.02 16 2 C 0.15 5.88 3.37 44.99 0.15 6.03 16 3 C -0.14 -5.35 9.11 71.98 0.66 -4.70 16 4 N -0.59 -27.40 2.37 -678.03 -1.61 -29.00 16 5 C -0.24 -12.47 8.04 84.04 0.68 -11.79 16 6 H 0.06 2.88 7.14 -2.91 -0.02 2.86 16 7 C -0.04 -2.06 4.96 84.86 0.42 -1.64 16 8 N -0.92 -52.87 11.43 21.65 0.25 -52.62 16 9 Si 0.95 44.15 29.60 68.60 2.03 46.18 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.15 6.56 5.28 86.38 0.46 7.02 16 14 C -0.12 -4.26 5.65 30.59 0.17 -4.08 16 15 C 0.13 4.43 5.67 86.38 0.49 4.92 16 16 N -0.70 -19.27 5.54 -467.08 -2.59 -21.86 16 17 C 0.59 18.10 7.79 86.45 0.67 18.77 16 18 O -0.58 -22.47 16.97 -4.30 -0.07 -22.54 16 19 C -0.33 -8.09 6.48 23.88 0.15 -7.93 16 20 C 0.11 2.29 10.93 84.23 0.92 3.21 16 21 N -0.50 -10.38 9.98 -190.30 -1.90 -12.28 16 22 C 0.08 1.50 6.96 88.46 0.62 2.12 16 23 C -0.12 -1.37 6.28 -11.54 -0.07 -1.44 16 24 C -0.14 -1.39 10.12 30.59 0.31 -1.08 16 25 C -0.15 -1.36 10.23 30.59 0.31 -1.05 16 26 S 0.24 4.87 23.01 -56.49 -1.30 3.57 16 27 H 0.04 1.31 7.32 -2.38 -0.02 1.30 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 2.09 7.77 -2.39 -0.02 2.07 16 31 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 1.56 7.50 -2.39 -0.02 1.54 16 34 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.06 3.23 5.48 -2.39 -0.01 3.22 16 36 H 0.03 1.16 7.88 -2.39 -0.02 1.14 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.41 8.76 7.18 -92.70 -0.67 8.09 16 42 H 0.20 3.03 7.15 -2.91 -0.02 3.01 16 43 H 0.15 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.09 1.25 7.84 -2.38 -0.02 1.23 16 45 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -68.17 401.56 1.72 -66.45 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.30 Total: 17.77 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 6.60 Total: 4.33 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -5.84 Total: -115.77 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.07 Total: -22.54 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.30 Total: 3.57 kcal Total: -68.17 1.72 -66.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481357067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.950 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds