Wall clock time and date at job start Tue Mar 31 2020 19:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46866 * 2 1 4 4 N 1.46494 * 109.46925 * 179.97438 * 3 2 1 5 5 C 1.34782 * 120.00268 * 82.28859 * 4 3 2 6 6 O 1.21683 * 119.99963 * 182.87720 * 5 4 3 7 7 C 1.46687 * 119.99663 * 2.87591 * 5 4 3 8 8 S 1.76213 * 126.12930 * 352.03845 * 7 5 4 9 9 C 1.70959 * 90.31274 * 180.02562 * 8 7 5 10 10 C 1.50698 * 124.80361 * 180.02562 * 9 8 7 11 11 N 1.29432 * 110.38902 * 0.02562 * 9 8 7 12 12 C 1.30940 * 117.36597 * 359.97438 * 11 9 8 13 13 C 1.50700 * 122.90654 * 180.02562 * 12 11 9 14 14 C 1.46504 * 120.00020 * 262.28967 * 4 3 2 15 15 H 1.09002 * 110.64191 * 359.29345 * 14 4 3 16 16 C 1.55152 * 110.72081 * 122.44131 * 14 4 3 17 17 C 1.55125 * 101.48429 * 153.73219 * 16 14 4 18 18 N 1.47421 * 104.94411 * 323.22312 * 17 16 14 19 19 C 1.36936 * 125.65077 * 203.96877 * 18 17 16 20 20 H 1.07998 * 120.00150 * 172.76116 * 19 18 17 21 21 C 1.38814 * 119.99799 * 352.75824 * 19 18 17 22 22 N 1.31618 * 119.99894 * 4.33120 * 21 19 18 23 23 Si 1.86796 * 120.00269 * 184.32683 * 21 19 18 24 24 H 1.48500 * 109.47495 * 94.99767 * 23 21 19 25 25 H 1.48496 * 109.47557 * 215.00324 * 23 21 19 26 26 H 1.48501 * 109.47055 * 335.00168 * 23 21 19 27 27 C 1.47022 * 108.70253 * 24.00177 * 18 17 16 28 28 H 1.08997 * 109.47791 * 300.00213 * 1 2 3 29 29 H 1.09003 * 109.47394 * 60.00034 * 1 2 3 30 30 H 1.09003 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47205 * 240.00155 * 2 1 3 32 32 H 1.08999 * 109.46921 * 120.00007 * 2 1 3 33 33 H 1.09002 * 109.47082 * 60.00080 * 3 2 1 34 34 H 1.09003 * 109.47086 * 300.00154 * 3 2 1 35 35 H 1.09000 * 109.47141 * 90.00017 * 10 9 8 36 36 H 1.09000 * 109.46837 * 209.99850 * 10 9 8 37 37 H 1.08996 * 109.47133 * 329.99894 * 10 9 8 38 38 H 1.09006 * 109.46803 * 89.97544 * 13 12 11 39 39 H 1.08996 * 109.47236 * 209.97723 * 13 12 11 40 40 H 1.08998 * 109.46984 * 329.97620 * 13 12 11 41 41 H 1.08999 * 111.00204 * 271.93268 * 16 14 4 42 42 H 1.08996 * 111.00458 * 35.79273 * 16 14 4 43 43 H 1.08998 * 110.41858 * 204.29249 * 17 16 14 44 44 H 1.09002 * 110.29748 * 82.08741 * 17 16 14 45 45 H 0.97003 * 120.00142 * 179.97438 * 22 21 19 46 46 H 1.09007 * 109.88021 * 239.52386 * 27 18 17 47 47 H 1.09003 * 109.88332 * 118.36359 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1794 1.2858 -1.1557 6 8 5.3950 1.2333 -1.1487 7 6 3.4478 1.1784 -2.4226 8 16 1.7009 1.0363 -2.6049 9 6 1.8734 0.9805 -4.3048 10 6 0.7327 0.8534 -5.2814 11 7 3.1223 1.0628 -4.6343 12 6 3.9950 1.1696 -3.6640 13 6 5.4789 1.2742 -3.9053 14 6 4.2369 1.6130 1.2582 15 1 3.5454 1.7386 2.0913 16 6 5.1854 0.4110 1.5085 17 6 6.2791 1.0603 2.3966 18 7 6.4435 2.4239 1.8612 19 6 7.5631 3.2020 1.9892 20 1 7.6303 4.1423 1.4623 21 6 8.6115 2.7821 2.7962 22 7 8.5669 1.5986 3.3703 23 14 10.0859 3.8965 3.0672 24 1 9.8982 4.6698 4.3210 25 1 11.3166 3.0724 3.1734 26 1 10.2151 4.8336 1.9224 27 6 5.2060 2.8105 1.1678 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 0.3792 1.8466 -5.5584 36 1 1.0745 0.3276 -6.1729 37 1 -0.0807 0.2941 -4.8192 38 1 5.7576 2.3232 -4.0056 39 1 6.0156 0.8344 -3.0647 40 1 5.7367 0.7406 -4.8201 41 1 4.6704 -0.3890 2.0403 42 1 5.6093 0.0464 0.5729 43 1 7.2138 0.5055 2.3153 44 1 5.9499 1.0976 3.4351 45 1 9.2997 1.3050 3.9340 46 1 5.4213 3.0353 0.1231 47 1 4.7656 3.6814 1.6533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481411080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:17 Heat of formation + Delta-G solvation = 47.137860 kcal Electronic energy + Delta-G solvation = -28289.764035 eV Core-core repulsion = 24600.795745 eV Total energy + Delta-G solvation = -3688.968291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49768 -39.58936 -36.73933 -36.15595 -33.31899 -32.84388 -31.82241 -29.42009 -29.22056 -28.38703 -27.20136 -25.96049 -24.41889 -22.97852 -22.47915 -21.61959 -20.15512 -19.96006 -18.31085 -18.03120 -16.90680 -16.80561 -15.85159 -15.58332 -15.09399 -14.74908 -14.56604 -14.50237 -14.10085 -13.88348 -13.57522 -13.47334 -13.25351 -13.08443 -12.79189 -12.61348 -12.46786 -12.20976 -12.11979 -11.99164 -11.72874 -11.59457 -11.43476 -11.37051 -11.10192 -10.93999 -10.83412 -10.74089 -10.45118 -10.02116 -9.79065 -9.63578 -9.56034 -9.30239 -9.16150 -8.73916 -8.51574 -8.31747 -6.68245 -5.58223 -2.95248 0.22565 1.14272 1.52223 2.46306 3.01547 3.31140 3.46793 3.51735 3.54231 3.90241 4.45363 4.59482 4.62857 4.72350 4.76679 4.99633 5.07084 5.09748 5.13261 5.16842 5.30735 5.42877 5.44925 5.52391 5.57192 5.59768 5.75741 5.78017 5.78638 5.81067 5.87014 5.89478 5.95384 6.04710 6.25735 6.45881 6.56515 6.58676 6.67646 6.79104 7.18124 7.46554 7.62784 7.67330 7.72063 7.94066 8.35537 8.44281 9.32067 9.93201 10.59441 11.49290 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.003462 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.598593 B = 8086.404172 C = 9219.339715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.152 4.152 3 C 0.098 3.902 4 N -0.601 5.601 5 C 0.588 3.412 6 O -0.488 6.488 7 C -0.301 4.301 8 S 0.192 5.808 9 C 0.016 3.984 10 C -0.079 4.079 11 N -0.484 5.484 12 C 0.150 3.850 13 C -0.094 4.094 14 C 0.138 3.862 15 H 0.091 0.909 16 C -0.157 4.157 17 C 0.168 3.832 18 N -0.595 5.595 19 C -0.216 4.216 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.133 3.867 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.014 0.986 45 H 0.251 0.749 46 H 0.037 0.963 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.816 -4.024 -12.375 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C -0.028 4.028 4 N -0.333 5.333 5 C 0.374 3.626 6 O -0.363 6.363 7 C -0.425 4.425 8 S 0.451 5.549 9 C -0.258 4.258 10 C -0.139 4.139 11 N -0.200 5.200 12 C 0.012 3.988 13 C -0.153 4.153 14 C 0.035 3.965 15 H 0.109 0.891 16 C -0.196 4.196 17 C 0.043 3.957 18 N -0.321 5.321 19 C -0.344 4.344 20 H 0.093 0.907 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.743 3.257 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.006 3.994 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -21.721 -4.092 -12.184 25.239 hybrid contribution 1.382 0.708 -0.023 1.553 sum -20.339 -3.384 -12.207 23.962 Atomic orbital electron populations 1.21726 0.94617 1.02278 1.01931 1.22194 0.96644 0.96820 1.03444 1.21969 0.80538 0.97483 1.02761 1.47837 1.05689 1.72386 1.07392 1.16722 0.86783 0.77593 0.81465 1.90892 1.11975 1.48082 1.85348 1.25660 0.95950 1.21458 0.99407 1.84492 1.04069 1.66089 1.00260 1.27943 0.96121 1.00648 1.01066 1.20458 0.92636 1.03645 0.97147 1.66162 1.00432 1.17135 1.36237 1.20646 0.97989 0.94407 0.85716 1.20725 0.86785 1.03467 1.04294 1.22257 0.93328 0.98211 0.82676 0.89111 1.23497 0.98012 0.95815 1.02297 1.21653 0.96545 0.85491 0.92035 1.44265 1.10437 1.13968 1.63428 1.19043 0.92821 1.00580 1.21997 0.90725 1.24776 0.98847 0.97385 0.99658 1.69881 1.32505 1.18244 1.36476 0.86080 0.82197 0.79578 0.77853 1.21781 1.21794 1.20689 1.21486 0.87690 0.93252 0.96980 0.92184 0.92565 0.92069 0.91165 0.90527 0.88642 0.90713 0.89545 0.89448 0.90105 0.90229 0.87552 0.90992 0.92808 0.90005 0.88738 0.96850 0.93883 0.94555 0.96472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.77 37.16 0.36 -0.58 16 2 C -0.15 -1.39 5.18 -26.73 -0.14 -1.53 16 3 C 0.10 1.04 4.97 -4.04 -0.02 1.02 16 4 N -0.60 -9.15 2.56 -165.55 -0.42 -9.57 16 5 C 0.59 10.13 6.64 -12.85 -0.09 10.04 16 6 O -0.49 -10.28 10.63 5.20 0.06 -10.23 16 7 C -0.30 -4.41 6.11 -37.09 -0.23 -4.64 16 8 S 0.19 1.93 14.60 -107.50 -1.57 0.36 16 9 C 0.02 0.17 7.39 -13.29 -0.10 0.08 16 10 C -0.08 -0.52 10.46 36.00 0.38 -0.14 16 11 N -0.48 -6.69 10.50 -7.70 -0.08 -6.77 16 12 C 0.15 2.24 6.79 -83.89 -0.57 1.67 16 13 C -0.09 -1.38 9.80 36.01 0.35 -1.02 16 14 C 0.14 2.48 3.43 -66.10 -0.23 2.25 16 15 H 0.09 1.43 7.77 -51.93 -0.40 1.03 16 16 C -0.16 -3.18 6.43 -24.47 -0.16 -3.34 16 17 C 0.17 4.27 5.69 -2.41 -0.01 4.25 16 18 N -0.59 -16.06 3.40 -169.93 -0.58 -16.64 16 19 C -0.22 -6.33 10.26 -15.06 -0.15 -6.48 16 20 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -27.84 10.23 55.49 0.57 -27.27 16 23 Si 0.91 22.94 29.56 -169.99 -5.02 17.91 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 27 C 0.13 2.98 6.48 -3.06 -0.02 2.96 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.31 7.18 -51.93 -0.37 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.72 6.07 -47.46 -0.29 0.43 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.87 7.79 -51.93 -0.40 0.47 16 34 H 0.08 0.75 4.45 -22.49 -0.10 0.65 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 1.78 5.85 -51.93 -0.30 1.48 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.82 5.93 -51.93 -0.31 1.51 16 43 H 0.09 2.72 6.24 -51.93 -0.32 2.40 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.04 0.88 6.16 -51.93 -0.32 0.56 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -34.53 370.83 -9.20 -43.73 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.02 Total: -1.23 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.71 Total: 4.12 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.51 Total: -60.25 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.06 Total: -10.23 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.57 Total: 0.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.53 -9.20 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481411080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.865 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds