Wall clock time and date at job start Tue Mar 31 2020 19:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46866 * 2 1 4 4 N 1.46494 * 109.46925 * 179.97438 * 3 2 1 5 5 C 1.34782 * 120.00268 * 82.28859 * 4 3 2 6 6 O 1.21683 * 119.99963 * 182.87720 * 5 4 3 7 7 C 1.46687 * 119.99663 * 2.87591 * 5 4 3 8 8 S 1.76213 * 126.12930 * 352.03845 * 7 5 4 9 9 C 1.70959 * 90.31274 * 180.02562 * 8 7 5 10 10 C 1.50698 * 124.80361 * 180.02562 * 9 8 7 11 11 N 1.29432 * 110.38902 * 0.02562 * 9 8 7 12 12 C 1.30940 * 117.36597 * 359.97438 * 11 9 8 13 13 C 1.50700 * 122.90654 * 180.02562 * 12 11 9 14 14 C 1.46504 * 120.00020 * 262.28967 * 4 3 2 15 15 H 1.09002 * 110.64191 * 359.29345 * 14 4 3 16 16 C 1.55152 * 110.72081 * 122.44131 * 14 4 3 17 17 C 1.55125 * 101.48429 * 153.73219 * 16 14 4 18 18 N 1.47421 * 104.94411 * 323.22312 * 17 16 14 19 19 C 1.36936 * 125.65077 * 203.96877 * 18 17 16 20 20 H 1.07998 * 120.00150 * 172.76116 * 19 18 17 21 21 C 1.38814 * 119.99799 * 352.75824 * 19 18 17 22 22 N 1.31618 * 119.99894 * 4.33120 * 21 19 18 23 23 Si 1.86796 * 120.00269 * 184.32683 * 21 19 18 24 24 H 1.48500 * 109.47495 * 94.99767 * 23 21 19 25 25 H 1.48496 * 109.47557 * 215.00324 * 23 21 19 26 26 H 1.48501 * 109.47055 * 335.00168 * 23 21 19 27 27 C 1.47022 * 108.70253 * 24.00177 * 18 17 16 28 28 H 1.08997 * 109.47791 * 300.00213 * 1 2 3 29 29 H 1.09003 * 109.47394 * 60.00034 * 1 2 3 30 30 H 1.09003 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47205 * 240.00155 * 2 1 3 32 32 H 1.08999 * 109.46921 * 120.00007 * 2 1 3 33 33 H 1.09002 * 109.47082 * 60.00080 * 3 2 1 34 34 H 1.09003 * 109.47086 * 300.00154 * 3 2 1 35 35 H 1.09000 * 109.47141 * 90.00017 * 10 9 8 36 36 H 1.09000 * 109.46837 * 209.99850 * 10 9 8 37 37 H 1.08996 * 109.47133 * 329.99894 * 10 9 8 38 38 H 1.09006 * 109.46803 * 89.97544 * 13 12 11 39 39 H 1.08996 * 109.47236 * 209.97723 * 13 12 11 40 40 H 1.08998 * 109.46984 * 329.97620 * 13 12 11 41 41 H 1.08999 * 111.00204 * 271.93268 * 16 14 4 42 42 H 1.08996 * 111.00458 * 35.79273 * 16 14 4 43 43 H 1.08998 * 110.41858 * 204.29249 * 17 16 14 44 44 H 1.09002 * 110.29748 * 82.08741 * 17 16 14 45 45 H 0.97003 * 120.00142 * 179.97438 * 22 21 19 46 46 H 1.09007 * 109.88021 * 239.52386 * 27 18 17 47 47 H 1.09003 * 109.88332 * 118.36359 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1794 1.2858 -1.1557 6 8 5.3950 1.2333 -1.1487 7 6 3.4478 1.1784 -2.4226 8 16 1.7009 1.0363 -2.6049 9 6 1.8734 0.9805 -4.3048 10 6 0.7327 0.8534 -5.2814 11 7 3.1223 1.0628 -4.6343 12 6 3.9950 1.1696 -3.6640 13 6 5.4789 1.2742 -3.9053 14 6 4.2369 1.6130 1.2582 15 1 3.5454 1.7386 2.0913 16 6 5.1854 0.4110 1.5085 17 6 6.2791 1.0603 2.3966 18 7 6.4435 2.4239 1.8612 19 6 7.5631 3.2020 1.9892 20 1 7.6303 4.1423 1.4623 21 6 8.6115 2.7821 2.7962 22 7 8.5669 1.5986 3.3703 23 14 10.0859 3.8965 3.0672 24 1 9.8982 4.6698 4.3210 25 1 11.3166 3.0724 3.1734 26 1 10.2151 4.8336 1.9224 27 6 5.2060 2.8105 1.1678 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 0.3792 1.8466 -5.5584 36 1 1.0745 0.3276 -6.1729 37 1 -0.0807 0.2941 -4.8192 38 1 5.7576 2.3232 -4.0056 39 1 6.0156 0.8344 -3.0647 40 1 5.7367 0.7406 -4.8201 41 1 4.6704 -0.3890 2.0403 42 1 5.6093 0.0464 0.5729 43 1 7.2138 0.5055 2.3153 44 1 5.9499 1.0976 3.4351 45 1 9.2997 1.3050 3.9340 46 1 5.4213 3.0353 0.1231 47 1 4.7656 3.6814 1.6533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481411080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:16 Heat of formation + Delta-G solvation = 24.583342 kcal Electronic energy + Delta-G solvation = -28290.742072 eV Core-core repulsion = 24600.795745 eV Total energy + Delta-G solvation = -3689.946328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71317 -40.69846 -38.44499 -37.32519 -34.78557 -33.80034 -33.36948 -31.16680 -30.15308 -29.84733 -28.59727 -27.07201 -26.32426 -23.90277 -23.61244 -22.60251 -22.03690 -21.34955 -19.39768 -19.21122 -18.80026 -18.07858 -16.94299 -16.74226 -16.61694 -16.27316 -15.96399 -15.62181 -15.58519 -15.03035 -14.83247 -14.45447 -14.36476 -14.22228 -14.02498 -13.80667 -13.54666 -13.36656 -13.22028 -13.14734 -13.00670 -12.95836 -12.75657 -12.73836 -12.51954 -12.40622 -12.19914 -12.05572 -12.02297 -11.86243 -11.81155 -11.47709 -10.74603 -10.69880 -10.44705 -10.27435 -9.83534 -9.43988 -8.84399 -7.81097 -5.21263 -0.75586 0.22045 0.60087 1.40733 1.43273 1.45962 1.54968 1.80706 2.10485 2.49602 3.05632 3.30809 3.43447 3.72017 3.80000 3.83080 3.95526 3.98924 4.06314 4.12475 4.22767 4.31323 4.50303 4.55991 4.56380 4.60360 4.67084 4.69647 4.71301 4.74335 4.85240 4.91971 4.95513 4.98575 5.04934 5.12822 5.20710 5.26180 5.31838 5.43961 5.49115 5.60827 5.69880 5.76878 6.26182 6.29581 6.68210 7.09460 7.10759 7.77619 8.42616 9.24456 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.003462 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.598593 B = 8086.404172 C = 9219.339715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C 0.090 3.910 4 N -0.596 5.596 5 C 0.583 3.417 6 O -0.542 6.542 7 C -0.342 4.342 8 S 0.280 5.720 9 C 0.016 3.984 10 C -0.082 4.082 11 N -0.514 5.514 12 C 0.139 3.861 13 C -0.090 4.090 14 C 0.157 3.843 15 H 0.127 0.873 16 C -0.141 4.141 17 C 0.174 3.826 18 N -0.617 5.617 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.273 1.273 27 C 0.131 3.869 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.001 0.999 45 H 0.247 0.753 46 H 0.015 0.985 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.900 -3.803 -12.859 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C -0.033 4.033 4 N -0.328 5.328 5 C 0.371 3.629 6 O -0.421 6.421 7 C -0.466 4.466 8 S 0.540 5.460 9 C -0.257 4.257 10 C -0.142 4.142 11 N -0.231 5.231 12 C 0.000 4.000 13 C -0.149 4.149 14 C 0.053 3.947 15 H 0.145 0.855 16 C -0.180 4.180 17 C 0.048 3.952 18 N -0.343 5.343 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.208 1.208 25 H -0.219 1.219 26 H -0.198 1.198 27 C 0.004 3.996 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.019 0.981 45 H 0.057 0.943 46 H 0.033 0.967 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -25.896 -3.869 -12.678 29.092 hybrid contribution 2.546 0.627 0.050 2.623 sum -23.350 -3.242 -12.628 26.743 Atomic orbital electron populations 1.21725 0.92003 1.03286 1.03133 1.22171 0.98747 0.95230 1.02687 1.22361 0.77362 0.99145 1.04479 1.47829 1.07576 1.71593 1.05771 1.17141 0.86428 0.76602 0.82719 1.90868 1.14444 1.50430 1.86320 1.25502 0.99535 1.23595 0.97952 1.83940 0.99082 1.64254 0.98758 1.28812 0.96211 0.97839 1.02839 1.20734 0.91696 1.05262 0.96465 1.66221 1.01543 1.19211 1.36093 1.20655 0.98086 0.94699 0.86511 1.20580 0.87633 1.03074 1.03623 1.21999 0.93085 0.94536 0.85088 0.85494 1.23245 0.97156 0.97272 1.00319 1.21400 0.96320 0.85041 0.92432 1.44548 1.11485 1.14560 1.63731 1.19361 0.94291 1.00909 1.22221 0.91091 1.25637 1.01668 0.98853 0.99641 1.70125 1.33110 1.19613 1.36843 0.85031 0.78365 0.77737 0.78024 1.20827 1.21866 1.19830 1.21604 0.87229 0.95640 0.95095 0.90986 0.91376 0.91229 0.92388 0.91023 0.86051 0.89835 0.87664 0.89282 0.87068 0.90660 0.90242 0.89790 0.89539 0.92346 0.93024 0.98094 0.94306 0.96725 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.77 71.98 0.70 -0.47 16 2 C -0.15 -2.22 5.18 30.60 0.16 -2.06 16 3 C 0.09 1.62 4.97 86.38 0.43 2.05 16 4 N -0.60 -17.50 2.56 -795.90 -2.04 -19.54 16 5 C 0.58 20.51 6.64 86.45 0.57 21.08 16 6 O -0.54 -24.40 10.63 -4.29 -0.05 -24.45 16 7 C -0.34 -9.94 6.11 23.88 0.15 -9.80 16 8 S 0.28 4.76 14.60 -56.49 -0.83 3.94 16 9 C 0.02 0.29 7.39 88.46 0.65 0.95 16 10 C -0.08 -0.74 10.46 71.24 0.75 0.01 16 11 N -0.51 -13.73 10.50 -178.28 -1.87 -15.61 16 12 C 0.14 4.25 6.79 42.09 0.29 4.54 16 13 C -0.09 -2.85 9.80 71.24 0.70 -2.15 16 14 C 0.16 5.49 3.43 46.18 0.16 5.65 16 15 H 0.13 3.59 7.77 -2.39 -0.02 3.57 16 16 C -0.14 -5.78 6.43 32.06 0.21 -5.57 16 17 C 0.17 9.17 5.69 86.93 0.49 9.66 16 18 N -0.62 -34.61 3.40 -691.55 -2.35 -36.96 16 19 C -0.24 -14.53 10.26 84.03 0.86 -13.67 16 20 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 21 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 22 N -0.95 -59.43 10.23 21.65 0.22 -59.21 16 23 Si 0.98 48.39 29.56 68.60 2.03 50.42 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 27 C 0.13 5.97 6.48 86.73 0.56 6.53 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.39 7.18 -2.39 -0.02 0.38 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 1.02 6.07 -5.23 -0.03 0.99 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 1.63 7.79 -2.39 -0.02 1.62 16 34 H 0.08 1.36 4.45 -21.10 -0.09 1.27 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.07 2.34 8.14 -2.38 -0.02 2.33 16 39 H 0.08 2.95 5.85 -2.39 -0.01 2.94 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.06 2.71 5.93 -2.39 -0.01 2.70 16 43 H 0.05 3.16 6.24 -2.39 -0.01 3.14 16 44 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.01 0.74 6.16 -2.38 -0.01 0.73 16 47 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -81.58 370.83 3.14 -78.44 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.88 Total: 9.69 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 7.14 Total: 13.28 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -6.03 Total: -131.31 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -0.83 Total: 3.94 kcal Total: -81.58 3.14 -78.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481411080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.021 kcal (2) G-P(sol) polarization free energy of solvation -81.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds