Wall clock time and date at job start Tue Mar 31 2020 19:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47439 * 303.22136 * 3 2 1 5 5 C 1.52999 * 109.47205 * 183.22148 * 3 2 1 6 6 N 1.46499 * 109.47196 * 185.00076 * 5 3 2 7 7 C 1.34782 * 120.00125 * 179.97438 * 6 5 3 8 8 O 1.21568 * 119.99732 * 0.02562 * 7 6 5 9 9 C 1.47700 * 119.99977 * 179.97438 * 7 6 5 10 10 C 1.39658 * 120.16707 * 0.02562 * 9 7 6 11 11 C 1.37857 * 119.87692 * 179.97438 * 10 9 7 12 12 C 1.38453 * 120.21690 * 359.97438 * 11 10 9 13 13 C 1.38201 * 120.34425 * 359.97438 * 12 11 10 14 14 C 1.38324 * 120.11235 * 0.02562 * 13 12 11 15 15 F 1.35105 * 120.10734 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.47338 * 63.22290 * 3 2 1 17 17 C 1.46895 * 110.99904 * 58.68235 * 16 3 2 18 18 C 1.50703 * 109.47026 * 174.49178 * 17 16 3 19 19 O 1.21296 * 119.99788 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00225 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00181 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99760 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99693 * 179.97438 * 21 20 18 24 24 N 1.31402 * 120.00080 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99526 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46999 * 60.00376 * 25 23 21 27 27 H 1.48498 * 109.46764 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47421 * 300.00414 * 25 23 21 29 29 H 1.09008 * 109.47406 * 173.95026 * 1 2 3 30 30 H 1.09000 * 109.47372 * 293.95141 * 1 2 3 31 31 H 1.09003 * 109.47312 * 53.94870 * 1 2 3 32 32 H 1.09006 * 109.46891 * 239.99832 * 2 1 3 33 33 H 1.09004 * 109.47281 * 120.00213 * 2 1 3 34 34 H 1.08998 * 109.47435 * 65.00247 * 5 3 2 35 35 H 1.09000 * 109.47315 * 304.99815 * 5 3 2 36 36 H 0.97000 * 120.00183 * 0.02562 * 6 5 3 37 37 H 1.08000 * 120.05967 * 359.95303 * 10 9 7 38 38 H 1.08003 * 119.88628 * 180.02562 * 11 10 9 39 39 H 1.08007 * 119.82482 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.94554 * 179.74877 * 13 12 11 41 41 H 1.00901 * 110.99583 * 294.73439 * 16 3 2 42 42 H 1.08998 * 109.47500 * 294.49521 * 17 16 3 43 43 H 1.09003 * 109.46881 * 54.49747 * 17 16 3 44 44 H 0.97005 * 119.99498 * 359.97438 * 20 18 17 45 45 H 0.97005 * 119.99730 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6303 1.9727 -0.8597 5 6 3.5678 1.4432 -0.0811 6 7 4.0625 2.8169 0.0390 7 6 5.3871 3.0624 -0.0046 8 8 6.1712 2.1439 -0.1441 9 6 5.8858 4.4474 0.1159 10 6 4.9880 5.5052 0.2758 11 6 5.4601 6.7955 0.3882 12 6 6.8210 7.0459 0.3437 13 6 7.7175 6.0059 0.1869 14 6 7.2592 4.7058 0.0727 15 9 8.1357 3.6893 -0.0811 16 7 1.6149 2.1121 1.2365 17 6 2.1238 1.4055 2.4195 18 6 1.7842 2.1923 3.6592 19 8 1.1775 3.2385 3.5663 20 7 2.1546 1.7335 4.8711 21 6 1.8452 2.4490 5.9989 22 1 1.3044 3.3800 5.9162 23 6 2.2267 1.9756 7.2484 24 7 2.8844 0.8424 7.3490 25 14 1.8058 2.9508 8.7850 26 1 0.3317 3.0957 8.8910 27 1 2.3197 2.2362 9.9810 28 1 2.4307 4.2954 8.7046 29 1 -0.3634 -1.0220 -0.1083 30 1 -0.3634 0.4172 0.9392 31 1 -0.3634 0.6048 -0.8309 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8811 1.0266 -1.0383 35 1 3.9749 0.8383 0.7291 36 1 3.4369 3.5497 0.1507 37 1 3.9259 5.3127 0.3109 38 1 4.7659 7.6136 0.5122 39 1 7.1840 8.0593 0.4328 40 1 8.7776 6.2090 0.1489 41 1 0.6105 2.2010 1.2726 42 1 1.6650 0.4185 2.4786 43 1 3.2058 1.2992 2.3417 44 1 2.6395 0.8966 4.9454 45 1 3.1510 0.5122 8.2212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481783818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:11 Heat of formation + Delta-G solvation = -92.438223 kcal Electronic energy + Delta-G solvation = -29082.532550 eV Core-core repulsion = 24821.298610 eV Total energy + Delta-G solvation = -4261.233940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.88400 -40.12858 -38.89937 -38.19805 -37.23210 -34.20589 -33.88657 -31.79547 -31.68093 -31.16643 -30.65760 -28.63636 -26.61183 -24.58914 -24.13355 -23.27038 -22.46100 -20.62164 -20.23785 -19.17735 -18.21424 -17.88611 -17.14295 -16.84548 -16.58875 -15.78949 -15.62680 -15.46454 -15.23248 -14.99185 -14.72354 -14.57874 -14.24840 -14.18593 -13.89614 -13.62352 -13.45059 -13.22968 -13.18282 -12.63767 -12.38629 -12.30061 -12.22545 -11.91916 -11.79256 -11.54606 -11.50956 -11.36216 -11.06820 -10.88888 -10.80731 -10.44741 -10.21373 -9.89240 -9.49738 -9.38850 -9.02784 -8.86374 -8.52599 -8.10242 -7.96113 -6.41248 -3.82314 0.55460 0.96865 2.77357 3.11803 3.19583 3.25623 3.29530 3.59242 3.90700 4.03801 4.08680 4.31147 4.44916 4.56434 4.60528 4.71134 4.84732 4.95838 5.01233 5.04496 5.15428 5.24301 5.27262 5.38884 5.47885 5.56449 5.59651 5.73303 5.77293 5.79656 5.82741 5.85745 5.93133 5.97976 6.06880 6.10823 6.17614 6.26014 6.45596 6.58346 7.11238 7.53711 7.54785 7.58211 8.05809 8.24782 8.61162 9.17781 9.54614 10.05741 10.76355 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007926 B = 0.003565 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.005184 B = 7852.748255 C =10069.492266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.127 3.873 6 N -0.706 5.706 7 C 0.555 3.445 8 O -0.534 6.534 9 C -0.171 4.171 10 C -0.052 4.052 11 C -0.139 4.139 12 C -0.067 4.067 13 C -0.169 4.169 14 C 0.157 3.843 15 F -0.117 7.117 16 N -0.659 5.659 17 C 0.043 3.957 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.410 0.590 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.353 0.647 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 5.727 -17.752 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.359 5.359 7 C 0.341 3.659 8 O -0.412 6.412 9 C -0.175 4.175 10 C -0.071 4.071 11 C -0.157 4.157 12 C -0.085 4.085 13 C -0.187 4.187 14 C 0.136 3.864 15 F -0.095 7.095 16 N -0.292 5.292 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.906 6.067 -17.742 19.153 hybrid contribution -0.564 -0.795 1.070 1.448 sum 3.343 5.272 -16.671 17.802 Atomic orbital electron populations 1.21757 0.95224 1.01957 1.02107 1.22202 0.96780 0.97879 1.03114 1.21936 0.94014 0.93535 0.94285 0.89179 1.21437 0.92939 0.83327 1.02034 1.45669 1.06530 1.10247 1.73428 1.17995 0.82730 0.87881 0.77245 1.90824 1.55665 1.45394 1.49317 1.20098 0.92783 0.94862 1.09721 1.21344 0.99744 0.91736 0.94236 1.21197 0.95859 0.96980 1.01633 1.21215 0.92934 0.99045 0.95303 1.21156 1.01550 0.90763 1.05267 1.17735 0.85982 0.84930 0.97751 1.91592 1.67566 1.58394 1.91904 1.60200 1.18431 1.50950 0.99597 1.21767 1.01172 0.95521 0.90481 1.19780 0.85415 0.87934 0.84160 1.90508 1.45204 1.24819 1.86331 1.41861 1.50400 1.22916 1.04769 1.19633 1.34246 1.05772 0.83354 0.88006 1.25258 0.96802 0.96476 0.99329 1.69603 1.38742 1.20019 1.25821 0.85931 0.78864 0.79349 0.80147 1.19929 1.20971 1.19898 0.92478 0.92427 0.92510 0.91296 0.91001 0.91102 0.91169 0.75281 0.84195 0.84538 0.84584 0.84168 0.82681 0.93415 0.89544 0.77530 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.49 37.16 0.35 -1.07 16 2 C -0.16 -1.55 5.12 -26.74 -0.14 -1.69 16 3 C 0.07 0.78 2.72 -67.71 -0.18 0.59 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 5 C 0.13 1.55 4.71 -4.04 -0.02 1.53 16 6 N -0.71 -9.23 5.34 -61.30 -0.33 -9.56 16 7 C 0.55 8.60 7.77 -12.39 -0.10 8.50 16 8 O -0.53 -10.09 15.34 5.31 0.08 -10.01 16 9 C -0.17 -2.31 5.88 -104.91 -0.62 -2.93 16 10 C -0.05 -0.56 9.54 -39.19 -0.37 -0.93 16 11 C -0.14 -1.24 10.03 -39.64 -0.40 -1.63 16 12 C -0.07 -0.56 10.03 -39.52 -0.40 -0.95 16 13 C -0.17 -1.69 10.01 -39.56 -0.40 -2.09 16 14 C 0.16 2.11 7.29 -38.96 -0.28 1.83 16 15 F -0.12 -1.84 15.55 2.25 0.04 -1.80 16 16 N -0.66 -9.16 5.33 -107.99 -0.58 -9.74 16 17 C 0.04 0.72 5.33 -4.98 -0.03 0.70 16 18 C 0.44 10.13 7.83 -10.99 -0.09 10.04 16 19 O -0.58 -15.17 15.90 5.54 0.09 -15.08 16 20 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.61 7.17 -51.93 -0.37 0.24 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.98 6.58 -51.93 -0.34 0.64 16 36 H 0.41 4.88 6.17 -40.82 -0.25 4.62 16 37 H 0.14 1.32 6.41 -52.49 -0.34 0.99 16 38 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.35 5.01 7.34 -39.29 -0.29 4.72 16 42 H 0.05 0.74 6.52 -51.93 -0.34 0.40 16 43 H 0.09 1.46 6.17 -51.93 -0.32 1.14 16 44 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -33.78 378.55 -8.05 -41.83 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -5.79 Total: 16.92 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.90 Total: 3.92 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.24 Total: -57.53 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.78 -8.05 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481783818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.607 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds