Wall clock time and date at job start Tue Mar 31 2020 19:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47439 * 303.22136 * 3 2 1 5 5 C 1.52999 * 109.47205 * 183.22148 * 3 2 1 6 6 N 1.46499 * 109.47196 * 185.00076 * 5 3 2 7 7 C 1.34782 * 120.00125 * 179.97438 * 6 5 3 8 8 O 1.21568 * 119.99732 * 0.02562 * 7 6 5 9 9 C 1.47700 * 119.99977 * 179.97438 * 7 6 5 10 10 C 1.39658 * 120.16707 * 0.02562 * 9 7 6 11 11 C 1.37857 * 119.87692 * 179.97438 * 10 9 7 12 12 C 1.38453 * 120.21690 * 359.97438 * 11 10 9 13 13 C 1.38201 * 120.34425 * 359.97438 * 12 11 10 14 14 C 1.38324 * 120.11235 * 0.02562 * 13 12 11 15 15 F 1.35105 * 120.10734 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.47338 * 63.22290 * 3 2 1 17 17 C 1.46895 * 110.99904 * 58.68235 * 16 3 2 18 18 C 1.50703 * 109.47026 * 174.49178 * 17 16 3 19 19 O 1.21296 * 119.99788 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00225 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00181 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99760 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99693 * 179.97438 * 21 20 18 24 24 N 1.31402 * 120.00080 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99526 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46999 * 60.00376 * 25 23 21 27 27 H 1.48498 * 109.46764 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47421 * 300.00414 * 25 23 21 29 29 H 1.09008 * 109.47406 * 173.95026 * 1 2 3 30 30 H 1.09000 * 109.47372 * 293.95141 * 1 2 3 31 31 H 1.09003 * 109.47312 * 53.94870 * 1 2 3 32 32 H 1.09006 * 109.46891 * 239.99832 * 2 1 3 33 33 H 1.09004 * 109.47281 * 120.00213 * 2 1 3 34 34 H 1.08998 * 109.47435 * 65.00247 * 5 3 2 35 35 H 1.09000 * 109.47315 * 304.99815 * 5 3 2 36 36 H 0.97000 * 120.00183 * 0.02562 * 6 5 3 37 37 H 1.08000 * 120.05967 * 359.95303 * 10 9 7 38 38 H 1.08003 * 119.88628 * 180.02562 * 11 10 9 39 39 H 1.08007 * 119.82482 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.94554 * 179.74877 * 13 12 11 41 41 H 1.00901 * 110.99583 * 294.73439 * 16 3 2 42 42 H 1.08998 * 109.47500 * 294.49521 * 17 16 3 43 43 H 1.09003 * 109.46881 * 54.49747 * 17 16 3 44 44 H 0.97005 * 119.99498 * 359.97438 * 20 18 17 45 45 H 0.97005 * 119.99730 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6303 1.9727 -0.8597 5 6 3.5678 1.4432 -0.0811 6 7 4.0625 2.8169 0.0390 7 6 5.3871 3.0624 -0.0046 8 8 6.1712 2.1439 -0.1441 9 6 5.8858 4.4474 0.1159 10 6 4.9880 5.5052 0.2758 11 6 5.4601 6.7955 0.3882 12 6 6.8210 7.0459 0.3437 13 6 7.7175 6.0059 0.1869 14 6 7.2592 4.7058 0.0727 15 9 8.1357 3.6893 -0.0811 16 7 1.6149 2.1121 1.2365 17 6 2.1238 1.4055 2.4195 18 6 1.7842 2.1923 3.6592 19 8 1.1775 3.2385 3.5663 20 7 2.1546 1.7335 4.8711 21 6 1.8452 2.4490 5.9989 22 1 1.3044 3.3800 5.9162 23 6 2.2267 1.9756 7.2484 24 7 2.8844 0.8424 7.3490 25 14 1.8058 2.9508 8.7850 26 1 0.3317 3.0957 8.8910 27 1 2.3197 2.2362 9.9810 28 1 2.4307 4.2954 8.7046 29 1 -0.3634 -1.0220 -0.1083 30 1 -0.3634 0.4172 0.9392 31 1 -0.3634 0.6048 -0.8309 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8811 1.0266 -1.0383 35 1 3.9749 0.8383 0.7291 36 1 3.4369 3.5497 0.1507 37 1 3.9259 5.3127 0.3109 38 1 4.7659 7.6136 0.5122 39 1 7.1840 8.0593 0.4328 40 1 8.7776 6.2090 0.1489 41 1 0.6105 2.2010 1.2726 42 1 1.6650 0.4185 2.4786 43 1 3.2058 1.2992 2.3417 44 1 2.6395 0.8966 4.9454 45 1 3.1510 0.5122 8.2212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481783818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:10 Heat of formation + Delta-G solvation = -117.254580 kcal Electronic energy + Delta-G solvation = -29083.608668 eV Core-core repulsion = 24821.298610 eV Total energy + Delta-G solvation = -4262.310058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93683 -41.20636 -40.29745 -39.34369 -38.55785 -35.95419 -35.27259 -33.30626 -32.77549 -32.54000 -31.47577 -29.68855 -28.12159 -26.13165 -25.29821 -24.11362 -23.30616 -21.83539 -21.42402 -20.64507 -19.89547 -19.12899 -18.32839 -18.08893 -17.58344 -17.12575 -16.81857 -16.57361 -16.48042 -16.17855 -16.04132 -15.85455 -15.63255 -15.43483 -15.21176 -14.82681 -14.58204 -14.34115 -14.15085 -14.03614 -13.58815 -13.51646 -13.25522 -13.15688 -13.01252 -12.88480 -12.72626 -12.42718 -12.33843 -12.29852 -12.13549 -11.87143 -11.68983 -11.48057 -11.06474 -10.34792 -10.30058 -10.01603 -10.00849 -9.76515 -9.35593 -8.45843 -5.94820 -0.33019 0.15777 1.39775 1.41224 1.52436 1.75825 2.06365 2.08922 2.29117 2.68398 2.93010 3.17581 3.21458 3.49967 3.60295 3.70079 3.74195 3.98888 4.00739 4.15432 4.27007 4.27559 4.29700 4.34433 4.45629 4.50893 4.56194 4.68122 4.77475 4.79289 4.91890 4.98929 5.01133 5.11530 5.20811 5.24443 5.35129 5.37306 5.38474 5.40836 5.80624 5.86447 6.07400 6.40486 6.48984 6.59761 7.12836 7.13235 7.56964 8.11264 8.71495 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007926 B = 0.003565 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.005184 B = 7852.748255 C =10069.492266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.085 3.915 4 H 0.117 0.883 5 C 0.124 3.876 6 N -0.697 5.697 7 C 0.547 3.453 8 O -0.580 6.580 9 C -0.197 4.197 10 C -0.058 4.058 11 C -0.133 4.133 12 C -0.054 4.054 13 C -0.165 4.165 14 C 0.120 3.880 15 F -0.141 7.141 16 N -0.663 5.663 17 C 0.062 3.938 18 C 0.441 3.559 19 O -0.614 6.614 20 N -0.577 5.577 21 C -0.332 4.332 22 H 0.083 0.917 23 C -0.015 4.015 24 N -0.924 5.924 25 Si 0.993 3.007 26 H -0.269 1.269 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.416 0.584 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.354 0.646 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.393 0.607 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 7.499 -18.359 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.134 0.866 5 C 0.000 4.000 6 N -0.348 5.348 7 C 0.335 3.665 8 O -0.462 6.462 9 C -0.201 4.201 10 C -0.076 4.076 11 C -0.151 4.151 12 C -0.071 4.071 13 C -0.184 4.184 14 C 0.099 3.901 15 F -0.119 7.119 16 N -0.296 5.296 17 C -0.070 4.070 18 C 0.229 3.771 19 O -0.500 6.500 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.565 5.565 25 Si 0.816 3.184 26 H -0.194 1.194 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.255 0.745 37 H 0.167 0.833 38 H 0.186 0.814 39 H 0.195 0.805 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.149 7.837 -18.372 20.220 hybrid contribution -0.361 -1.265 1.175 1.764 sum 2.788 6.572 -17.197 18.620 Atomic orbital electron populations 1.21740 0.94613 1.02627 1.01808 1.22165 0.97163 0.96835 1.03422 1.21974 0.92719 0.94529 0.93311 0.86556 1.21529 0.93931 0.82698 1.01830 1.45662 1.05990 1.10839 1.72323 1.18449 0.83038 0.88514 0.76524 1.90782 1.56771 1.46888 1.51760 1.20137 0.93495 0.94476 1.12023 1.21543 0.99846 0.92055 0.94199 1.21644 0.96906 0.96795 0.99739 1.21724 0.92383 1.00316 0.92716 1.21492 1.03187 0.89586 1.04133 1.18242 0.85957 0.85826 1.00051 1.91520 1.68226 1.59713 1.92464 1.60150 1.18484 1.51357 0.99608 1.21505 1.01296 0.95388 0.88830 1.20795 0.83548 0.87650 0.85132 1.90476 1.46181 1.26338 1.87036 1.41969 1.51185 1.23035 1.05206 1.19649 1.35582 1.05938 0.84969 0.89951 1.26064 0.96252 0.97351 1.01773 1.69682 1.39097 1.20981 1.26710 0.84989 0.78771 0.77993 0.76611 1.19400 1.19793 1.19638 0.91766 0.94081 0.91039 0.89416 0.92340 0.90027 0.93187 0.74538 0.83273 0.81431 0.80525 0.82068 0.82521 0.91611 0.89576 0.77429 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.49 71.98 0.68 -1.79 16 2 C -0.16 -2.73 5.12 30.59 0.16 -2.57 16 3 C 0.08 1.66 2.72 44.91 0.12 1.78 16 4 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 5 C 0.12 2.98 4.71 86.38 0.41 3.39 16 6 N -0.70 -18.30 5.34 -466.11 -2.49 -20.79 16 7 C 0.55 17.66 7.77 86.74 0.67 18.33 16 8 O -0.58 -23.26 15.34 -3.93 -0.06 -23.32 16 9 C -0.20 -5.47 5.88 -20.05 -0.12 -5.59 16 10 C -0.06 -1.19 9.54 22.52 0.21 -0.97 16 11 C -0.13 -1.98 10.03 22.23 0.22 -1.76 16 12 C -0.05 -0.71 10.03 22.31 0.22 -0.49 16 13 C -0.17 -3.09 10.01 22.28 0.22 -2.87 16 14 C 0.12 3.31 7.29 22.67 0.17 3.48 16 15 F -0.14 -4.74 15.55 44.97 0.70 -4.04 16 16 N -0.66 -17.77 5.33 -495.58 -2.64 -20.41 16 17 C 0.06 2.09 5.33 85.56 0.46 2.54 16 18 C 0.44 20.53 7.83 87.66 0.69 21.21 16 19 O -0.61 -32.28 15.90 -3.08 -0.05 -32.33 16 20 N -0.58 -29.80 5.29 -306.98 -1.62 -31.43 16 21 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.04 0.81 7.17 -2.39 -0.02 0.80 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.20 6.33 -2.39 -0.02 1.18 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.42 6.58 -2.39 -0.02 1.41 16 36 H 0.42 9.68 6.17 -92.71 -0.57 9.11 16 37 H 0.15 2.65 6.41 -2.91 -0.02 2.63 16 38 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.35 9.62 7.34 -89.69 -0.66 8.96 16 42 H 0.07 2.00 6.52 -2.39 -0.02 1.98 16 43 H 0.09 2.95 6.17 -2.39 -0.01 2.94 16 44 H 0.39 19.78 7.90 -92.70 -0.73 19.05 16 45 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -76.53 378.55 0.65 -75.88 By element: Atomic # 1 Polarization: 46.53 SS G_CDS: -0.90 Total: 45.63 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.40 Total: 16.34 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -6.47 Total: -123.22 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -0.11 Total: -55.65 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.70 Total: -4.04 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -76.53 0.65 -75.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481783818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.372 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds