Wall clock time and date at job start Tue Mar 31 2020 19:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46769 * 2 1 4 4 H 1.08999 * 109.47022 * 55.38312 * 3 2 1 5 5 C 1.52999 * 109.46827 * 175.37844 * 3 2 1 6 6 N 1.46500 * 109.47293 * 175.00518 * 5 3 2 7 7 C 1.34773 * 120.00595 * 180.02562 * 6 5 3 8 8 O 1.21575 * 119.99627 * 359.97438 * 7 6 5 9 9 C 1.47695 * 120.00178 * 180.02562 * 7 6 5 10 10 C 1.39659 * 120.16707 * 359.96757 * 9 7 6 11 11 C 1.37852 * 119.87620 * 180.02562 * 10 9 7 12 12 C 1.38463 * 120.22163 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.33653 * 359.97438 * 12 11 10 14 14 C 1.38321 * 120.12077 * 0.02562 * 13 12 11 15 15 F 1.35102 * 120.11424 * 180.02562 * 14 13 12 16 16 N 1.46898 * 109.47280 * 295.37740 * 3 2 1 17 17 C 1.46898 * 111.00218 * 302.88706 * 16 3 2 18 18 C 1.50704 * 109.47077 * 185.63653 * 17 16 3 19 19 O 1.21294 * 119.99693 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99639 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99739 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00097 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00455 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99164 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00337 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47479 * 359.97438 * 25 23 21 27 27 H 1.48508 * 109.47143 * 119.99840 * 25 23 21 28 28 H 1.48501 * 109.47060 * 239.99710 * 25 23 21 29 29 H 1.09001 * 109.46881 * 178.72583 * 1 2 3 30 30 H 1.08998 * 109.46861 * 298.72409 * 1 2 3 31 31 H 1.08997 * 109.47182 * 58.73002 * 1 2 3 32 32 H 1.09000 * 109.47201 * 240.00728 * 2 1 3 33 33 H 1.08992 * 109.47697 * 120.00456 * 2 1 3 34 34 H 1.08993 * 109.47639 * 55.00398 * 5 3 2 35 35 H 1.09002 * 109.47593 * 295.00094 * 5 3 2 36 36 H 0.97003 * 119.99928 * 359.97438 * 6 5 3 37 37 H 1.07997 * 120.05868 * 0.04947 * 10 9 7 38 38 H 1.08006 * 119.88996 * 180.28569 * 11 10 9 39 39 H 1.07998 * 119.83145 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.94121 * 180.02562 * 13 12 11 41 41 H 1.00897 * 111.00019 * 66.84413 * 16 3 2 42 42 H 1.09006 * 109.46652 * 305.63576 * 17 16 3 43 43 H 1.08995 * 109.47201 * 65.63832 * 17 16 3 44 44 H 0.96994 * 120.00751 * 0.02562 * 20 18 17 45 45 H 0.97002 * 119.99432 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6106 1.9797 0.8457 5 6 3.5655 1.4441 0.1162 6 7 4.0630 2.8169 -0.0035 7 6 5.3861 3.0629 0.0687 8 8 6.1668 2.1457 0.2336 9 6 5.8875 4.4470 -0.0514 10 6 4.9937 5.5033 -0.2406 11 6 5.4683 6.7927 -0.3525 12 6 6.8280 7.0438 -0.2785 13 6 7.7204 6.0053 -0.0915 14 6 7.2596 4.7061 0.0225 15 9 8.1321 3.6910 0.2058 16 7 1.6435 2.1021 -1.2513 17 6 2.1482 1.3652 -2.4176 18 6 1.8427 2.1413 -3.6728 19 8 1.2621 3.2040 -3.6026 20 7 2.2155 1.6551 -4.8732 21 6 1.9381 2.3613 -6.0150 22 1 1.4204 3.3071 -5.9526 23 6 2.3219 1.8598 -7.2528 24 7 2.9513 0.7087 -7.3287 25 14 1.9433 2.8218 -8.8085 26 1 1.2319 4.0762 -8.4542 27 1 3.2113 3.1518 -9.5075 28 1 1.0851 2.0018 -9.7010 29 1 -0.3633 -1.0274 -0.0229 30 1 -0.3633 0.4939 0.9012 31 1 -0.3633 0.5334 -0.8783 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8898 34 1 3.9912 0.8328 -0.6794 35 1 3.8567 1.0354 1.0838 36 1 3.4401 3.5487 -0.1355 37 1 3.9327 5.3103 -0.2987 38 1 4.7769 7.6103 -0.4941 39 1 7.1929 8.0563 -0.3674 40 1 8.7796 6.2085 -0.0343 41 1 0.6419 2.2136 -1.2997 42 1 3.2263 1.2333 -2.3253 43 1 1.6655 0.3892 -2.4674 44 1 2.6801 0.8055 -4.9293 45 1 3.2196 0.3588 -8.1927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481783822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:14 Heat of formation + Delta-G solvation = -92.187873 kcal Electronic energy + Delta-G solvation = -29060.893781 eV Core-core repulsion = 24799.670697 eV Total energy + Delta-G solvation = -4261.223084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.88655 -40.12613 -38.90132 -38.20174 -37.23434 -34.21044 -33.88912 -31.79053 -31.68531 -31.16776 -30.65967 -28.64270 -26.61293 -24.58643 -24.14298 -23.27608 -22.46361 -20.62031 -20.24069 -19.17367 -18.21560 -17.88894 -17.14457 -16.85063 -16.59129 -15.79332 -15.63530 -15.47277 -15.23067 -14.98915 -14.72458 -14.58062 -14.24444 -14.18911 -13.89338 -13.62575 -13.46253 -13.23156 -13.17786 -12.63834 -12.39105 -12.30957 -12.22803 -11.92483 -11.78937 -11.54863 -11.51380 -11.37275 -11.10061 -10.89021 -10.80049 -10.35116 -10.22680 -9.89216 -9.51902 -9.39046 -9.02790 -8.86403 -8.53060 -8.10559 -7.96256 -6.41721 -3.82633 0.55232 0.96633 2.77271 3.11960 3.15854 3.26435 3.33158 3.59119 3.90436 4.03564 4.08401 4.31024 4.44648 4.56440 4.60253 4.70937 4.85009 4.95662 5.01005 5.04362 5.15047 5.23868 5.26761 5.39002 5.47770 5.56090 5.59703 5.73512 5.77074 5.79191 5.82325 5.85944 5.92892 5.97922 6.06256 6.10566 6.17638 6.25949 6.45735 6.58127 7.10933 7.53447 7.54998 7.58272 8.06011 8.24878 8.60810 9.17744 9.54477 10.05430 10.76066 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.003527 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.252168 B = 7936.785649 C =10131.884508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.127 3.873 6 N -0.706 5.706 7 C 0.555 3.445 8 O -0.534 6.534 9 C -0.171 4.171 10 C -0.052 4.052 11 C -0.139 4.139 12 C -0.067 4.067 13 C -0.169 4.169 14 C 0.157 3.843 15 F -0.116 7.116 16 N -0.659 5.659 17 C 0.043 3.957 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.352 0.648 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 6.032 17.853 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.358 5.358 7 C 0.341 3.659 8 O -0.412 6.412 9 C -0.175 4.175 10 C -0.071 4.071 11 C -0.157 4.157 12 C -0.085 4.085 13 C -0.187 4.187 14 C 0.136 3.864 15 F -0.095 7.095 16 N -0.292 5.292 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.604 6.377 17.854 19.298 hybrid contribution -0.557 -0.822 -1.073 1.462 sum 3.047 5.555 16.781 17.937 Atomic orbital electron populations 1.21755 0.95235 1.02024 1.02002 1.22208 0.96775 0.97877 1.03157 1.21922 0.94159 0.93674 0.94026 0.89198 1.21428 0.92954 0.83346 1.01951 1.45663 1.06721 1.10361 1.73087 1.17993 0.82709 0.87859 0.77302 1.90826 1.55816 1.45444 1.49138 1.20101 0.92833 0.94890 1.09631 1.21342 0.99760 0.91744 0.94217 1.21198 0.95856 0.96981 1.01634 1.21216 0.92961 0.99044 0.95281 1.21156 1.01557 0.90793 1.05234 1.17737 0.86058 0.84959 0.97649 1.91592 1.67818 1.58499 1.91545 1.60192 1.19498 1.49911 0.99571 1.21769 1.01201 0.95354 0.90612 1.19783 0.85272 0.87930 0.84263 1.90509 1.46084 1.23690 1.86536 1.41872 1.51479 1.21800 1.04868 1.19733 1.35189 1.04764 0.83173 0.87897 1.25265 0.96850 0.96390 0.99437 1.69625 1.39609 1.18675 1.26276 0.85815 0.78113 0.79525 0.80973 1.19230 1.20740 1.20774 0.92473 0.92569 0.92428 0.90947 0.91280 0.91192 0.91113 0.75295 0.84194 0.84542 0.84585 0.84170 0.82701 0.89559 0.93360 0.77535 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.70 37.16 0.36 -1.05 16 2 C -0.16 -1.56 5.10 -26.73 -0.14 -1.69 16 3 C 0.07 0.78 2.70 -67.71 -0.18 0.59 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.13 1.55 4.76 -4.04 -0.02 1.53 16 6 N -0.71 -9.22 5.34 -61.30 -0.33 -9.55 16 7 C 0.55 8.58 7.77 -12.40 -0.10 8.49 16 8 O -0.53 -10.09 15.34 5.30 0.08 -10.01 16 9 C -0.17 -2.31 5.88 -104.91 -0.62 -2.92 16 10 C -0.05 -0.56 9.54 -39.19 -0.37 -0.93 16 11 C -0.14 -1.23 10.03 -39.64 -0.40 -1.63 16 12 C -0.07 -0.55 10.04 -39.51 -0.40 -0.95 16 13 C -0.17 -1.69 10.01 -39.56 -0.40 -2.08 16 14 C 0.16 2.10 7.29 -38.96 -0.28 1.82 16 15 F -0.12 -1.83 15.55 2.25 0.04 -1.80 16 16 N -0.66 -9.14 5.32 -107.99 -0.57 -9.72 16 17 C 0.04 0.72 5.31 -4.98 -0.03 0.70 16 18 C 0.44 10.13 7.83 -10.99 -0.09 10.04 16 19 O -0.58 -15.15 15.90 5.55 0.09 -15.06 16 20 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 25 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.61 6.87 -51.93 -0.36 0.25 16 32 H 0.07 0.79 6.23 -51.93 -0.32 0.46 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.98 6.61 -51.93 -0.34 0.63 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 4.86 6.17 -40.82 -0.25 4.61 16 37 H 0.14 1.31 6.41 -52.49 -0.34 0.98 16 38 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.35 4.98 7.29 -39.29 -0.29 4.70 16 42 H 0.09 1.46 6.22 -51.93 -0.32 1.13 16 43 H 0.05 0.74 6.48 -51.93 -0.34 0.41 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -33.86 378.32 -8.02 -41.88 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -5.77 Total: 16.79 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.89 Total: 3.97 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.24 Total: -57.49 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.17 Total: -25.07 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.86 -8.02 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481783822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.311 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds