Wall clock time and date at job start Tue Mar 31 2020 19:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46769 * 2 1 4 4 H 1.08999 * 109.47022 * 55.38312 * 3 2 1 5 5 C 1.52999 * 109.46827 * 175.37844 * 3 2 1 6 6 N 1.46500 * 109.47293 * 175.00518 * 5 3 2 7 7 C 1.34773 * 120.00595 * 180.02562 * 6 5 3 8 8 O 1.21575 * 119.99627 * 359.97438 * 7 6 5 9 9 C 1.47695 * 120.00178 * 180.02562 * 7 6 5 10 10 C 1.39659 * 120.16707 * 359.96757 * 9 7 6 11 11 C 1.37852 * 119.87620 * 180.02562 * 10 9 7 12 12 C 1.38463 * 120.22163 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.33653 * 359.97438 * 12 11 10 14 14 C 1.38321 * 120.12077 * 0.02562 * 13 12 11 15 15 F 1.35102 * 120.11424 * 180.02562 * 14 13 12 16 16 N 1.46898 * 109.47280 * 295.37740 * 3 2 1 17 17 C 1.46898 * 111.00218 * 302.88706 * 16 3 2 18 18 C 1.50704 * 109.47077 * 185.63653 * 17 16 3 19 19 O 1.21294 * 119.99693 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99639 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99739 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00097 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00455 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99164 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00337 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47479 * 359.97438 * 25 23 21 27 27 H 1.48508 * 109.47143 * 119.99840 * 25 23 21 28 28 H 1.48501 * 109.47060 * 239.99710 * 25 23 21 29 29 H 1.09001 * 109.46881 * 178.72583 * 1 2 3 30 30 H 1.08998 * 109.46861 * 298.72409 * 1 2 3 31 31 H 1.08997 * 109.47182 * 58.73002 * 1 2 3 32 32 H 1.09000 * 109.47201 * 240.00728 * 2 1 3 33 33 H 1.08992 * 109.47697 * 120.00456 * 2 1 3 34 34 H 1.08993 * 109.47639 * 55.00398 * 5 3 2 35 35 H 1.09002 * 109.47593 * 295.00094 * 5 3 2 36 36 H 0.97003 * 119.99928 * 359.97438 * 6 5 3 37 37 H 1.07997 * 120.05868 * 0.04947 * 10 9 7 38 38 H 1.08006 * 119.88996 * 180.28569 * 11 10 9 39 39 H 1.07998 * 119.83145 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.94121 * 180.02562 * 13 12 11 41 41 H 1.00897 * 111.00019 * 66.84413 * 16 3 2 42 42 H 1.09006 * 109.46652 * 305.63576 * 17 16 3 43 43 H 1.08995 * 109.47201 * 65.63832 * 17 16 3 44 44 H 0.96994 * 120.00751 * 0.02562 * 20 18 17 45 45 H 0.97002 * 119.99432 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6106 1.9797 0.8457 5 6 3.5655 1.4441 0.1162 6 7 4.0630 2.8169 -0.0035 7 6 5.3861 3.0629 0.0687 8 8 6.1668 2.1457 0.2336 9 6 5.8875 4.4470 -0.0514 10 6 4.9937 5.5033 -0.2406 11 6 5.4683 6.7927 -0.3525 12 6 6.8280 7.0438 -0.2785 13 6 7.7204 6.0053 -0.0915 14 6 7.2596 4.7061 0.0225 15 9 8.1321 3.6910 0.2058 16 7 1.6435 2.1021 -1.2513 17 6 2.1482 1.3652 -2.4176 18 6 1.8427 2.1413 -3.6728 19 8 1.2621 3.2040 -3.6026 20 7 2.2155 1.6551 -4.8732 21 6 1.9381 2.3613 -6.0150 22 1 1.4204 3.3071 -5.9526 23 6 2.3219 1.8598 -7.2528 24 7 2.9513 0.7087 -7.3287 25 14 1.9433 2.8218 -8.8085 26 1 1.2319 4.0762 -8.4542 27 1 3.2113 3.1518 -9.5075 28 1 1.0851 2.0018 -9.7010 29 1 -0.3633 -1.0274 -0.0229 30 1 -0.3633 0.4939 0.9012 31 1 -0.3633 0.5334 -0.8783 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8898 34 1 3.9912 0.8328 -0.6794 35 1 3.8567 1.0354 1.0838 36 1 3.4401 3.5487 -0.1355 37 1 3.9327 5.3103 -0.2987 38 1 4.7769 7.6103 -0.4941 39 1 7.1929 8.0563 -0.3674 40 1 8.7796 6.2085 -0.0343 41 1 0.6419 2.2136 -1.2997 42 1 3.2263 1.2333 -2.3253 43 1 1.6655 0.3892 -2.4674 44 1 2.6801 0.8055 -4.9293 45 1 3.2196 0.3588 -8.1927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481783822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:13 Heat of formation + Delta-G solvation = -117.081514 kcal Electronic energy + Delta-G solvation = -29061.973250 eV Core-core repulsion = 24799.670697 eV Total energy + Delta-G solvation = -4262.302553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93676 -41.20138 -40.30028 -39.34210 -38.55841 -35.95659 -35.27676 -33.30503 -32.77073 -32.53886 -31.47471 -29.69422 -28.12148 -26.13018 -25.30270 -24.11521 -23.30609 -21.83600 -21.42774 -20.63642 -19.89540 -19.12852 -18.33111 -18.08782 -17.58416 -17.13439 -16.81990 -16.57003 -16.48926 -16.17831 -16.03591 -15.84639 -15.63131 -15.43342 -15.21279 -14.84245 -14.57109 -14.33739 -14.15048 -14.03856 -13.58901 -13.52686 -13.25593 -13.15657 -13.01166 -12.90111 -12.74444 -12.39847 -12.34166 -12.30185 -12.11321 -11.85376 -11.67957 -11.49858 -11.06346 -10.34736 -10.30018 -10.01445 -10.00745 -9.76381 -9.35823 -8.46351 -5.95098 -0.32954 0.15879 1.36417 1.41332 1.55672 1.75974 2.06175 2.09241 2.28919 2.68513 2.92870 3.17648 3.21135 3.49928 3.60211 3.70619 3.74211 3.98990 4.01083 4.15197 4.27107 4.27565 4.29776 4.34955 4.45678 4.51170 4.56255 4.68273 4.77508 4.79127 4.91732 4.99035 5.01214 5.11698 5.20905 5.24612 5.35207 5.37499 5.38586 5.41250 5.80714 5.86594 6.07521 6.40644 6.49292 6.59585 7.12934 7.13494 7.56956 8.11202 8.71497 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.003527 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.252168 B = 7936.785649 C =10131.884508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.116 0.884 5 C 0.125 3.875 6 N -0.696 5.696 7 C 0.546 3.454 8 O -0.581 6.581 9 C -0.197 4.197 10 C -0.058 4.058 11 C -0.133 4.133 12 C -0.054 4.054 13 C -0.165 4.165 14 C 0.119 3.881 15 F -0.141 7.141 16 N -0.663 5.663 17 C 0.062 3.938 18 C 0.442 3.558 19 O -0.614 6.614 20 N -0.577 5.577 21 C -0.330 4.330 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.271 1.271 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.416 0.584 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.354 0.646 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.393 0.607 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 7.779 18.410 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.134 0.866 5 C 0.001 3.999 6 N -0.348 5.348 7 C 0.335 3.665 8 O -0.462 6.462 9 C -0.201 4.201 10 C -0.076 4.076 11 C -0.151 4.151 12 C -0.071 4.071 13 C -0.184 4.184 14 C 0.099 3.901 15 F -0.119 7.119 16 N -0.296 5.296 17 C -0.070 4.070 18 C 0.229 3.771 19 O -0.500 6.500 20 N -0.215 5.215 21 C -0.459 4.459 22 H 0.100 0.900 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.817 3.183 26 H -0.194 1.194 27 H -0.199 1.199 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.255 0.745 37 H 0.167 0.833 38 H 0.186 0.814 39 H 0.195 0.805 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.847 8.121 18.431 20.341 hybrid contribution -0.354 -1.283 -1.168 1.771 sum 2.494 6.838 17.263 18.735 Atomic orbital electron populations 1.21739 0.94591 1.02378 1.02056 1.22171 0.97189 0.96835 1.03437 1.21955 0.92900 0.94683 0.92991 0.86575 1.21520 0.93924 0.82709 1.01779 1.45656 1.06184 1.10948 1.71986 1.18450 0.83016 0.88498 0.76580 1.90784 1.56925 1.46944 1.51583 1.20139 0.93546 0.94500 1.11940 1.21541 0.99870 0.92062 0.94165 1.21646 0.96889 0.96794 0.99749 1.21725 0.92410 1.00306 0.92694 1.21490 1.03180 0.89613 1.04117 1.18243 0.86044 0.85859 0.99936 1.91519 1.68476 1.59820 1.92112 1.60139 1.19565 1.50248 0.99666 1.21510 1.01417 0.95284 0.88808 1.20803 0.83336 0.87645 0.85306 1.90477 1.47049 1.25231 1.87264 1.41976 1.52294 1.21917 1.05266 1.19718 1.36585 1.04820 0.84821 0.89978 1.26066 0.96240 0.97237 1.01956 1.69698 1.39920 1.19620 1.27271 0.84868 0.78184 0.78128 0.77160 1.19387 1.19911 1.19649 0.91954 0.90996 0.93936 0.92298 0.89446 0.93229 0.90045 0.74543 0.83268 0.81423 0.80526 0.82076 0.82519 0.89577 0.91513 0.77416 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.70 71.98 0.70 -1.76 16 2 C -0.16 -2.74 5.10 30.60 0.16 -2.58 16 3 C 0.08 1.66 2.70 44.92 0.12 1.78 16 4 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.12 3.00 4.76 86.38 0.41 3.41 16 6 N -0.70 -18.29 5.34 -466.13 -2.49 -20.77 16 7 C 0.55 17.64 7.77 86.74 0.67 18.31 16 8 O -0.58 -23.27 15.34 -3.95 -0.06 -23.33 16 9 C -0.20 -5.46 5.88 -20.05 -0.12 -5.58 16 10 C -0.06 -1.18 9.54 22.52 0.21 -0.97 16 11 C -0.13 -1.97 10.03 22.23 0.22 -1.74 16 12 C -0.05 -0.71 10.04 22.31 0.22 -0.48 16 13 C -0.17 -3.08 10.01 22.28 0.22 -2.85 16 14 C 0.12 3.30 7.29 22.67 0.17 3.47 16 15 F -0.14 -4.74 15.55 44.97 0.70 -4.04 16 16 N -0.66 -17.74 5.32 -495.58 -2.63 -20.38 16 17 C 0.06 2.08 5.31 85.56 0.45 2.53 16 18 C 0.44 20.52 7.83 87.66 0.69 21.21 16 19 O -0.61 -32.29 15.90 -3.07 -0.05 -32.34 16 20 N -0.58 -29.80 5.29 -306.98 -1.62 -31.42 16 21 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.89 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 24 N -0.92 -50.83 13.05 21.67 0.28 -50.55 16 25 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.83 6.87 -2.39 -0.02 0.81 16 32 H 0.06 1.21 6.23 -2.39 -0.01 1.19 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.41 6.61 -2.39 -0.02 1.40 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.42 9.66 6.17 -92.71 -0.57 9.09 16 37 H 0.15 2.63 6.41 -2.91 -0.02 2.61 16 38 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 41 H 0.35 9.57 7.29 -89.70 -0.65 8.92 16 42 H 0.09 2.94 6.22 -2.38 -0.01 2.92 16 43 H 0.07 2.01 6.48 -2.39 -0.02 2.00 16 44 H 0.39 19.74 7.90 -92.71 -0.73 19.01 16 45 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -76.72 378.32 0.68 -76.04 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -0.89 Total: 45.22 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.41 Total: 16.46 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -6.46 Total: -123.12 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -0.11 Total: -55.67 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.70 Total: -4.04 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -76.72 0.68 -76.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481783822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.037 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds