Wall clock time and date at job start Tue Mar 31 2020 19:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21273 * 119.99559 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00160 * 179.97438 * 7 6 5 10 10 N 1.46492 * 109.47199 * 179.97438 * 9 7 6 11 11 C 1.34778 * 120.00064 * 180.02562 * 10 9 7 12 12 O 1.21549 * 119.99864 * 359.97438 * 11 10 9 13 13 C 1.47854 * 119.99916 * 180.02562 * 11 10 9 14 14 C 1.39592 * 120.13271 * 359.72306 * 13 11 10 15 15 C 1.37950 * 119.90533 * 179.76659 * 14 13 11 16 16 C 1.38342 * 120.16939 * 0.51154 * 15 14 13 17 17 C 1.38552 * 120.27046 * 359.73878 * 16 15 14 18 18 F 1.35103 * 119.95185 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.08913 * 0.02562 * 17 16 15 20 20 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 3 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 3 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 31 31 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 32 32 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 34 34 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 35 35 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 36 36 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 37 37 H 1.08997 * 109.47068 * 300.00505 * 9 7 6 38 38 H 1.09008 * 109.46877 * 59.99887 * 9 7 6 39 39 H 0.97000 * 120.00021 * 359.97438 * 10 9 7 40 40 H 1.08002 * 120.05004 * 0.02614 * 14 13 11 41 41 H 1.07994 * 119.91302 * 180.23176 * 15 14 13 42 42 H 1.08001 * 119.86526 * 179.76876 * 16 15 14 43 43 H 1.07999 * 120.08272 * 180.02562 * 19 17 16 44 44 H 0.97000 * 120.00040 * 94.99981 * 20 3 2 45 45 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1633 2.1486 -0.2584 9 6 5.8980 4.4751 0.0357 10 7 7.3580 4.4769 -0.0846 11 6 8.0393 5.6371 -0.0047 12 8 7.4423 6.6819 0.1666 13 6 9.5128 5.6389 -0.1267 14 6 10.2016 4.4400 -0.3189 15 6 11.5760 4.4477 -0.4369 16 6 12.2742 5.6392 -0.3548 17 6 11.5983 6.8327 -0.1590 18 9 12.2865 7.9927 -0.0803 19 6 10.2210 6.8383 -0.0441 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5383 23 6 0.0486 3.2944 2.5547 24 7 -1.1382 3.8528 2.6653 25 14 1.2421 3.3451 3.9909 26 1 1.0351 2.1507 4.8488 27 1 2.6352 3.3499 3.4768 28 1 1.0047 4.5748 4.7887 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.9954 0.8312 0.6659 35 1 3.8499 1.0377 -1.0961 36 1 3.4409 3.5484 0.1308 37 1 5.4671 5.0881 -0.7558 38 1 5.6133 4.8820 1.0061 39 1 7.8345 3.6431 -0.2209 40 1 9.6589 3.5082 -0.3792 41 1 12.1087 3.5207 -0.5893 42 1 13.3505 5.6391 -0.4441 43 1 9.6942 7.7687 0.1081 44 1 2.2718 2.1231 1.9978 45 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481876245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:32 Heat of formation + Delta-G solvation = -82.266434 kcal Electronic energy + Delta-G solvation = -27897.581005 eV Core-core repulsion = 23636.788147 eV Total energy + Delta-G solvation = -4260.792858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.31994 -40.68207 -39.66810 -38.42784 -37.02974 -34.81968 -34.00178 -32.43377 -31.91124 -31.11272 -30.35555 -29.13604 -27.26428 -24.43948 -23.44705 -23.08703 -22.42018 -20.91103 -20.59826 -20.13687 -19.04661 -17.80368 -17.08802 -16.96417 -16.67770 -16.28090 -16.20477 -15.99263 -15.86146 -15.43843 -15.26291 -14.72343 -14.38002 -14.21096 -14.05627 -13.61274 -13.41978 -13.28500 -13.25782 -12.93043 -12.78360 -12.60450 -12.46907 -12.33882 -11.81701 -11.65351 -11.24095 -11.04133 -10.80163 -10.48419 -10.40025 -10.37097 -10.09328 -9.98358 -9.68517 -9.55412 -9.45397 -9.26417 -9.05601 -8.97504 -7.41948 -5.87228 -3.24156 0.22842 0.66157 2.37666 2.51031 2.53991 3.28218 3.28391 3.32737 3.33823 3.40236 3.76315 4.16728 4.24733 4.49070 4.49718 4.55919 4.66160 4.78674 5.08712 5.13110 5.16840 5.18577 5.26559 5.37737 5.45668 5.54126 5.66811 5.68269 5.72624 5.79764 5.82010 5.90201 5.98455 6.19011 6.28562 6.34795 6.43313 6.51026 6.63152 6.85940 7.14216 7.23306 7.52120 7.83629 7.87553 8.13175 8.30759 9.08087 9.80346 9.98946 11.30222 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.002160 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.901830 B =12960.833280 C =14091.702200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.064 0.936 5 C 0.112 3.888 6 N -0.707 5.707 7 C 0.507 3.493 8 O -0.553 6.553 9 C 0.097 3.903 10 N -0.709 5.709 11 C 0.560 3.440 12 O -0.530 6.530 13 C -0.102 4.102 14 C -0.095 4.095 15 C -0.096 4.096 16 C -0.130 4.130 17 C 0.092 3.908 18 F -0.135 7.135 19 C -0.095 4.095 20 N -0.747 5.747 21 C -0.245 4.245 22 H 0.095 0.905 23 C 0.008 3.992 24 N -0.929 5.929 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.278 1.278 28 H -0.291 1.291 29 H 0.033 0.967 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.412 0.588 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.150 0.850 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.159 -0.629 -8.146 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.013 4.013 6 N -0.359 5.359 7 C 0.292 3.708 8 O -0.432 6.432 9 C -0.030 4.030 10 N -0.365 5.365 11 C 0.346 3.654 12 O -0.407 6.407 13 C -0.106 4.106 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.149 4.149 17 C 0.072 3.928 18 F -0.114 7.114 19 C -0.115 4.115 20 N -0.390 5.390 21 C -0.374 4.374 22 H 0.113 0.887 23 C -0.188 4.188 24 N -0.576 5.576 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.205 1.205 28 H -0.218 1.218 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.251 0.749 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.251 0.749 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.999 -0.406 -8.181 25.359 hybrid contribution 0.720 0.153 1.230 1.433 sum 24.719 -0.253 -6.951 25.679 Atomic orbital electron populations 1.21782 0.95138 0.99763 1.03828 1.22039 0.97433 0.97743 1.00110 1.20558 0.89629 0.93131 0.90909 0.91826 1.21788 0.95773 0.82062 1.01636 1.45929 1.06785 1.11396 1.71743 1.20374 0.83151 0.90458 0.76817 1.90656 1.55952 1.46066 1.50506 1.21140 0.81251 0.95246 1.05369 1.45555 1.06852 1.10308 1.73749 1.18085 0.86764 0.83554 0.76981 1.90823 1.69978 1.31352 1.48551 1.19691 0.92998 0.93743 1.04118 1.21493 0.94854 0.97482 0.97574 1.21005 0.93740 0.97973 0.98710 1.21402 1.01364 0.91353 1.00741 1.17546 0.89721 0.82004 1.03498 1.91537 1.79330 1.46739 1.93771 1.21248 0.92090 0.99643 0.98480 1.42832 1.16874 1.67679 1.11655 1.19034 0.90600 1.27922 0.99875 0.88723 1.24673 0.96367 1.00230 0.97554 1.69689 1.19451 1.41577 1.26889 0.86622 0.80958 0.77373 0.83858 1.21209 1.20456 1.21787 0.94830 0.89317 0.93847 0.93542 0.92651 0.91636 0.91172 0.74883 0.87797 0.87783 0.74920 0.84479 0.84060 0.84150 0.83179 0.80527 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.18 37.16 0.34 -2.18 16 2 C -0.13 -2.05 5.61 -26.73 -0.15 -2.20 16 3 C 0.17 2.73 2.59 -67.93 -0.18 2.55 16 4 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 1.58 5.23 -4.05 -0.02 1.56 16 6 N -0.71 -9.65 5.39 -60.30 -0.32 -9.98 16 7 C 0.51 6.70 7.90 -10.98 -0.09 6.61 16 8 O -0.55 -8.39 15.67 5.56 0.09 -8.30 16 9 C 0.10 1.11 6.15 -5.20 -0.03 1.08 16 10 N -0.71 -7.71 5.48 -62.43 -0.34 -8.06 16 11 C 0.56 6.68 7.77 -12.32 -0.10 6.59 16 12 O -0.53 -8.06 16.35 5.32 0.09 -7.97 16 13 C -0.10 -0.99 5.87 -104.98 -0.62 -1.61 16 14 C -0.10 -0.68 9.54 -39.18 -0.37 -1.06 16 15 C -0.10 -0.55 10.03 -39.65 -0.40 -0.95 16 16 C -0.13 -0.84 10.02 -39.43 -0.40 -1.23 16 17 C 0.09 0.79 7.29 -39.48 -0.29 0.50 16 18 F -0.14 -1.28 17.26 2.25 0.04 -1.24 16 19 C -0.09 -0.92 9.57 -39.11 -0.37 -1.29 16 20 N -0.75 -15.10 4.31 -53.43 -0.23 -15.33 16 21 C -0.24 -6.06 8.24 -15.06 -0.12 -6.19 16 22 H 0.10 2.54 7.55 -52.49 -0.40 2.14 16 23 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 24 N -0.93 -27.42 13.97 55.49 0.78 -26.64 16 25 Si 0.88 20.81 27.74 -169.99 -4.72 16.09 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.11 6.51 56.52 0.37 -5.74 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.84 5.99 -51.93 -0.31 1.53 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.41 5.72 8.14 -40.82 -0.33 5.39 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.21 8.14 -51.92 -0.42 0.78 16 39 H 0.41 4.00 5.47 -40.82 -0.22 3.78 16 40 H 0.14 0.78 6.40 -52.49 -0.34 0.44 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.15 1.51 7.65 -52.49 -0.40 1.11 16 44 H 0.36 7.45 5.65 -40.82 -0.23 7.22 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -31.45 381.89 -7.80 -39.25 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.05 Total: 14.12 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -2.89 Total: 2.31 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.12 Total: -60.01 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.17 Total: -16.27 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.72 Total: 16.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.45 -7.80 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481876245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.017 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds