Wall clock time and date at job start Tue Mar 31 2020 19:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21273 * 119.99559 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00160 * 179.97438 * 7 6 5 10 10 N 1.46492 * 109.47199 * 179.97438 * 9 7 6 11 11 C 1.34778 * 120.00064 * 180.02562 * 10 9 7 12 12 O 1.21549 * 119.99864 * 359.97438 * 11 10 9 13 13 C 1.47854 * 119.99916 * 180.02562 * 11 10 9 14 14 C 1.39592 * 120.13271 * 359.72306 * 13 11 10 15 15 C 1.37950 * 119.90533 * 179.76659 * 14 13 11 16 16 C 1.38342 * 120.16939 * 0.51154 * 15 14 13 17 17 C 1.38552 * 120.27046 * 359.73878 * 16 15 14 18 18 F 1.35103 * 119.95185 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.08913 * 0.02562 * 17 16 15 20 20 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 3 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 3 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 31 31 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 32 32 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 34 34 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 35 35 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 36 36 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 37 37 H 1.08997 * 109.47068 * 300.00505 * 9 7 6 38 38 H 1.09008 * 109.46877 * 59.99887 * 9 7 6 39 39 H 0.97000 * 120.00021 * 359.97438 * 10 9 7 40 40 H 1.08002 * 120.05004 * 0.02614 * 14 13 11 41 41 H 1.07994 * 119.91302 * 180.23176 * 15 14 13 42 42 H 1.08001 * 119.86526 * 179.76876 * 16 15 14 43 43 H 1.07999 * 120.08272 * 180.02562 * 19 17 16 44 44 H 0.97000 * 120.00040 * 94.99981 * 20 3 2 45 45 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1633 2.1486 -0.2584 9 6 5.8980 4.4751 0.0357 10 7 7.3580 4.4769 -0.0846 11 6 8.0393 5.6371 -0.0047 12 8 7.4423 6.6819 0.1666 13 6 9.5128 5.6389 -0.1267 14 6 10.2016 4.4400 -0.3189 15 6 11.5760 4.4477 -0.4369 16 6 12.2742 5.6392 -0.3548 17 6 11.5983 6.8327 -0.1590 18 9 12.2865 7.9927 -0.0803 19 6 10.2210 6.8383 -0.0441 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5383 23 6 0.0486 3.2944 2.5547 24 7 -1.1382 3.8528 2.6653 25 14 1.2421 3.3451 3.9909 26 1 1.0351 2.1507 4.8488 27 1 2.6352 3.3499 3.4768 28 1 1.0047 4.5748 4.7887 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.9954 0.8312 0.6659 35 1 3.8499 1.0377 -1.0961 36 1 3.4409 3.5484 0.1308 37 1 5.4671 5.0881 -0.7558 38 1 5.6133 4.8820 1.0061 39 1 7.8345 3.6431 -0.2209 40 1 9.6589 3.5082 -0.3792 41 1 12.1087 3.5207 -0.5893 42 1 13.3505 5.6391 -0.4441 43 1 9.6942 7.7687 0.1081 44 1 2.2718 2.1231 1.9978 45 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481876245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:31 Heat of formation + Delta-G solvation = -104.481640 kcal Electronic energy + Delta-G solvation = -27898.544328 eV Core-core repulsion = 23636.788147 eV Total energy + Delta-G solvation = -4261.756182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.99076 -41.57498 -40.66054 -39.18998 -38.42568 -35.81731 -35.29522 -34.16884 -32.57039 -32.06897 -31.73354 -30.29479 -28.39938 -25.46931 -24.84390 -23.84697 -23.63011 -21.80247 -21.75336 -21.42463 -19.98585 -19.46403 -17.97382 -17.87571 -17.30662 -17.26218 -17.13781 -16.89456 -16.75701 -16.65996 -16.25162 -15.99991 -15.73137 -15.19652 -14.87319 -14.72962 -14.68825 -14.49380 -14.36090 -14.24801 -14.15556 -13.67096 -13.23795 -13.09000 -13.00322 -12.87897 -12.84704 -12.44064 -12.30569 -12.10911 -11.88997 -11.57978 -11.40265 -11.32727 -11.14890 -10.90466 -10.49572 -10.18974 -10.08079 -9.87388 -9.28085 -7.94499 -5.26502 -0.41213 0.07484 1.39918 1.42144 1.44343 1.49671 1.62052 1.62225 2.34715 2.52715 2.61384 3.14548 3.37563 3.45881 3.56150 3.66546 3.71746 3.90532 3.95436 4.00597 4.22541 4.23408 4.31036 4.35070 4.46887 4.58313 4.63042 4.74125 4.84396 4.91462 4.97868 5.04807 5.10231 5.11840 5.12723 5.20356 5.21105 5.40892 5.54331 5.72394 5.74331 5.89012 6.28123 6.29063 6.43231 6.95286 7.04970 7.14988 7.89516 8.07355 9.26544 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.002160 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.901830 B =12960.833280 C =14091.702200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.166 3.834 4 H 0.060 0.940 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.514 3.486 8 O -0.568 6.568 9 C 0.099 3.901 10 N -0.701 5.701 11 C 0.559 3.441 12 O -0.572 6.572 13 C -0.121 4.121 14 C -0.089 4.089 15 C -0.086 4.086 16 C -0.118 4.118 17 C 0.075 3.925 18 F -0.145 7.145 19 C -0.111 4.111 20 N -0.746 5.746 21 C -0.202 4.202 22 H 0.068 0.932 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.941 3.059 26 H -0.290 1.290 27 H -0.249 1.249 28 H -0.307 1.307 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.414 0.586 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.419 0.581 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.168 0.832 43 H 0.133 0.867 44 H 0.363 0.637 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.516 -2.982 -9.150 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.058 3.942 4 H 0.078 0.922 5 C -0.003 4.003 6 N -0.361 5.361 7 C 0.300 3.700 8 O -0.449 6.449 9 C -0.028 4.028 10 N -0.356 5.356 11 C 0.348 3.652 12 O -0.453 6.453 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.104 4.104 16 C -0.136 4.136 17 C 0.056 3.944 18 F -0.123 7.123 19 C -0.131 4.131 20 N -0.390 5.390 21 C -0.333 4.333 22 H 0.086 0.914 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.771 3.229 26 H -0.217 1.217 27 H -0.174 1.174 28 H -0.235 1.235 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.259 0.741 40 H 0.172 0.828 41 H 0.197 0.803 42 H 0.186 0.814 43 H 0.151 0.849 44 H 0.197 0.803 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 27.421 -2.820 -9.229 29.069 hybrid contribution -0.296 0.776 1.394 1.622 sum 27.125 -2.045 -7.835 28.308 Atomic orbital electron populations 1.21702 0.96623 1.00368 1.01542 1.21964 0.95921 0.97056 1.01842 1.20731 0.91446 0.93319 0.88722 0.92171 1.21670 0.93546 0.82407 1.02673 1.45934 1.07032 1.11225 1.71876 1.20481 0.82704 0.90733 0.76061 1.90647 1.56238 1.46708 1.51291 1.21123 0.81697 0.94291 1.05733 1.45495 1.06603 1.10371 1.73169 1.18458 0.87756 0.83041 0.75988 1.90796 1.70998 1.32747 1.50708 1.19568 0.91643 0.94817 1.06373 1.21742 0.95747 0.96956 0.96284 1.21435 0.93069 0.99082 0.96774 1.21772 1.02770 0.90467 0.98613 1.17733 0.89377 0.82641 1.04628 1.91509 1.79350 1.47491 1.93993 1.21197 0.92878 0.99306 0.99744 1.42814 1.15183 1.67632 1.13324 1.18945 0.91276 1.24933 0.98167 0.91369 1.25321 0.97933 1.01670 1.00469 1.69856 1.21934 1.44426 1.27325 0.85618 0.80518 0.76157 0.80603 1.21720 1.17375 1.23451 0.92880 0.93642 0.93960 0.90091 0.92547 0.91659 0.89262 0.74968 0.86893 0.87855 0.74070 0.82764 0.80340 0.81437 0.84904 0.80336 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 2 C -0.13 -3.58 5.61 30.60 0.17 -3.41 16 3 C 0.17 5.03 2.59 44.99 0.12 5.14 16 4 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 5 C 0.12 3.05 5.23 86.38 0.45 3.50 16 6 N -0.71 -17.65 5.39 -463.07 -2.49 -20.15 16 7 C 0.51 12.38 7.90 87.66 0.69 13.08 16 8 O -0.57 -15.64 15.67 -3.01 -0.05 -15.69 16 9 C 0.10 2.12 6.15 85.64 0.53 2.65 16 10 N -0.70 -14.31 5.48 -469.71 -2.57 -16.88 16 11 C 0.56 13.23 7.77 86.79 0.67 13.91 16 12 O -0.57 -17.91 16.35 -3.87 -0.06 -17.97 16 13 C -0.12 -2.25 5.87 -20.09 -0.12 -2.37 16 14 C -0.09 -1.04 9.54 22.53 0.21 -0.82 16 15 C -0.09 -0.65 10.03 22.23 0.22 -0.43 16 16 C -0.12 -1.17 10.02 22.37 0.22 -0.94 16 17 C 0.08 1.24 7.29 22.34 0.16 1.40 16 18 F -0.14 -2.71 17.26 44.97 0.78 -1.93 16 19 C -0.11 -2.20 9.57 22.57 0.22 -1.99 16 20 N -0.75 -29.13 4.31 -322.95 -1.39 -30.53 16 21 C -0.20 -10.07 8.24 84.03 0.69 -9.38 16 22 H 0.07 3.75 7.55 -2.91 -0.02 3.73 16 23 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 24 N -0.98 -60.21 13.97 21.65 0.30 -59.91 16 25 Si 0.94 43.32 27.74 68.60 1.90 45.22 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 27 H -0.25 -10.08 6.51 99.48 0.65 -9.44 16 28 H -0.31 -14.84 7.11 99.48 0.71 -14.14 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.88 5.99 -2.39 -0.01 1.87 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 10.63 8.14 -92.71 -0.75 9.88 16 37 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.42 7.24 5.47 -92.71 -0.51 6.74 16 40 H 0.15 1.22 6.40 -2.91 -0.02 1.21 16 41 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 42 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.13 2.96 7.65 -2.91 -0.02 2.94 16 44 H 0.36 14.16 5.65 -92.71 -0.52 13.63 16 45 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -70.64 381.89 0.99 -69.65 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.79 Total: 34.92 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.38 Total: 13.27 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -6.16 Total: -127.46 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.11 Total: -33.66 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.90 Total: 45.22 kcal Total: -70.64 0.99 -69.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481876245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.835 kcal (2) G-P(sol) polarization free energy of solvation -70.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds