Wall clock time and date at job start Tue Mar 31 2020 19:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46906 * 2 1 4 4 H 1.09004 * 109.47026 * 55.00507 * 3 2 1 5 5 C 1.53002 * 109.46991 * 174.99696 * 3 2 1 6 6 N 1.46496 * 109.47425 * 175.00428 * 5 3 2 7 7 C 1.34777 * 120.00266 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00135 * 0.27234 * 7 6 5 9 9 C 1.50706 * 119.99766 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 6 11 11 C 1.34769 * 120.00241 * 180.02562 * 10 9 7 12 12 O 1.21559 * 120.00044 * 359.97438 * 11 10 9 13 13 C 1.47854 * 120.00293 * 179.97438 * 11 10 9 14 14 C 1.39598 * 120.13035 * 359.72456 * 13 11 10 15 15 C 1.37948 * 119.90233 * 179.76882 * 14 13 11 16 16 C 1.38337 * 120.17303 * 0.50514 * 15 14 13 17 17 C 1.38549 * 120.27042 * 359.74410 * 16 15 14 18 18 F 1.35099 * 119.95400 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.09324 * 0.02562 * 17 16 15 20 20 N 1.46499 * 109.47621 * 294.99941 * 3 2 1 21 21 C 1.36929 * 119.99673 * 84.99701 * 20 3 2 22 22 H 1.07994 * 120.00724 * 0.02562 * 21 20 3 23 23 C 1.38823 * 119.99693 * 180.02562 * 21 20 3 24 24 N 1.31616 * 119.99757 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46865 * 60.00141 * 25 23 21 27 27 H 1.48497 * 109.47020 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47233 * 300.00394 * 25 23 21 29 29 H 1.08997 * 109.47278 * 299.99915 * 1 2 3 30 30 H 1.09005 * 109.46697 * 59.99721 * 1 2 3 31 31 H 1.09000 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47278 * 240.00084 * 2 1 3 33 33 H 1.09001 * 109.46965 * 119.99849 * 2 1 3 34 34 H 1.09004 * 109.46930 * 55.00250 * 5 3 2 35 35 H 1.09000 * 109.47312 * 295.00194 * 5 3 2 36 36 H 0.96999 * 119.99691 * 359.97438 * 6 5 3 37 37 H 1.09000 * 109.47161 * 299.99737 * 9 7 6 38 38 H 1.09001 * 109.46740 * 59.99879 * 9 7 6 39 39 H 0.97010 * 119.99910 * 359.97438 * 10 9 7 40 40 H 1.07999 * 120.04405 * 0.02562 * 14 13 11 41 41 H 1.07993 * 119.91058 * 180.22589 * 15 14 13 42 42 H 1.07997 * 119.86543 * 179.76585 * 16 15 14 43 43 H 1.07995 * 120.08986 * 180.02562 * 19 17 16 44 44 H 0.96996 * 119.99438 * 265.00371 * 20 3 2 45 45 H 0.97003 * 120.00024 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1258 6 7 4.0631 2.8168 0.0061 7 6 5.3857 3.0630 0.0861 8 8 6.1639 2.1478 0.2521 9 6 5.8982 4.4748 -0.0376 10 7 7.3583 4.4766 0.0830 11 6 8.0396 5.6367 0.0034 12 8 7.4427 6.6815 -0.1689 13 6 9.5131 5.6385 0.1257 14 6 10.2009 4.4409 0.3293 15 6 11.5760 4.4476 0.4379 16 6 12.2743 5.6390 0.3560 17 6 11.5985 6.8324 0.1592 18 9 12.2868 7.9922 0.0797 19 6 10.2212 6.8381 0.0441 20 7 1.6524 2.0976 -1.2518 21 6 0.4157 2.6735 -1.3687 22 1 -0.2740 2.6452 -0.5381 23 6 0.0482 3.2938 -2.5551 24 7 0.8885 3.3278 -3.5675 25 14 -1.6387 4.0801 -2.7144 26 1 -1.7864 5.1463 -1.6914 27 1 -1.7838 4.6700 -4.0694 28 1 -2.6870 3.0486 -2.5092 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8312 -0.6659 35 1 3.8498 1.0378 1.0961 36 1 3.4410 3.5483 -0.1314 37 1 5.6129 4.8812 -1.0079 38 1 5.4678 5.0882 0.7540 39 1 7.8346 3.6428 0.2208 40 1 9.6574 3.5102 0.3975 41 1 12.1085 3.5207 0.5918 42 1 13.3505 5.6389 0.4455 43 1 9.6945 7.7683 -0.1097 44 1 2.2720 2.1232 -1.9976 45 1 0.6317 3.7609 -4.3966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481876247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:33 Heat of formation + Delta-G solvation = -107.020342 kcal Electronic energy + Delta-G solvation = -27791.176820 eV Core-core repulsion = 23529.310552 eV Total energy + Delta-G solvation = -4261.866268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.98065 -41.54974 -40.62002 -39.16836 -38.28899 -35.78917 -35.24779 -34.14230 -32.55550 -31.73371 -31.48668 -30.15204 -28.32221 -25.63169 -24.95245 -23.86307 -23.62147 -21.73588 -21.71281 -21.28811 -19.84852 -19.17109 -17.96444 -17.85454 -17.29236 -17.18026 -17.11692 -16.87558 -16.70894 -16.61612 -16.21434 -15.98616 -15.63676 -15.24296 -14.91765 -14.85204 -14.54437 -14.36910 -14.26494 -14.20215 -13.93383 -13.53589 -13.21219 -12.99173 -12.95795 -12.76779 -12.73382 -12.42841 -12.36684 -12.13393 -11.86930 -11.61146 -11.31851 -11.30863 -11.10231 -10.84490 -10.47656 -10.17145 -10.03584 -9.86156 -8.95714 -7.86831 -5.13022 -0.39905 0.08666 1.47483 1.51603 1.52183 1.57446 1.63794 1.65348 2.38677 2.60927 2.62678 3.15637 3.46372 3.48316 3.65080 3.72877 3.92651 3.96694 3.98502 4.01773 4.23703 4.26021 4.33713 4.41515 4.50932 4.60068 4.64262 4.76049 4.90460 4.92594 4.99117 5.06500 5.13043 5.13164 5.15265 5.21602 5.22973 5.44773 5.58572 5.63335 5.73628 5.74487 6.30938 6.33841 6.48022 6.97016 7.09196 7.42254 8.14786 8.38564 9.35727 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.002037 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.124380 B =13740.480565 C =15070.687245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.162 3.838 4 H 0.060 0.940 5 C 0.124 3.876 6 N -0.704 5.704 7 C 0.513 3.487 8 O -0.572 6.572 9 C 0.102 3.898 10 N -0.701 5.701 11 C 0.559 3.441 12 O -0.573 6.573 13 C -0.120 4.120 14 C -0.089 4.089 15 C -0.086 4.086 16 C -0.117 4.117 17 C 0.076 3.924 18 F -0.144 7.144 19 C -0.111 4.111 20 N -0.727 5.727 21 C -0.214 4.214 22 H 0.080 0.920 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.956 3.044 26 H -0.279 1.279 27 H -0.306 1.306 28 H -0.283 1.283 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.413 0.587 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.418 0.582 40 H 0.154 0.846 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.133 0.867 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.012 -1.155 11.890 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.355 5.355 7 C 0.299 3.701 8 O -0.453 6.453 9 C -0.025 4.025 10 N -0.356 5.356 11 C 0.347 3.653 12 O -0.453 6.453 13 C -0.124 4.124 14 C -0.108 4.108 15 C -0.103 4.103 16 C -0.136 4.136 17 C 0.057 3.943 18 F -0.123 7.123 19 C -0.131 4.131 20 N -0.368 5.368 21 C -0.346 4.346 22 H 0.098 0.902 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.787 3.213 26 H -0.206 1.206 27 H -0.233 1.233 28 H -0.209 1.209 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.250 0.750 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.259 0.741 40 H 0.171 0.829 41 H 0.197 0.803 42 H 0.186 0.814 43 H 0.151 0.849 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.924 -0.995 11.944 24.114 hybrid contribution -1.157 0.936 -1.015 1.801 sum 19.767 -0.059 10.930 22.588 Atomic orbital electron populations 1.21708 0.96204 1.00518 1.01750 1.21989 0.96455 0.97421 1.01128 1.20750 0.91157 0.93244 0.89481 0.92208 1.21615 0.94173 0.82378 1.01908 1.45877 1.06967 1.11120 1.71487 1.20497 0.82744 0.90763 0.76053 1.90635 1.56248 1.46746 1.51687 1.21081 0.81657 0.94219 1.05564 1.45500 1.06612 1.10385 1.73078 1.18473 0.87786 0.83027 0.76002 1.90795 1.71026 1.32740 1.50743 1.19570 0.91604 0.94866 1.06327 1.21743 0.95791 0.96951 0.96300 1.21431 0.93004 0.99110 0.96798 1.21766 1.02776 0.90428 0.98615 1.17721 0.89339 0.82653 1.04619 1.91507 1.79330 1.47484 1.93988 1.21195 0.92901 0.99256 0.99754 1.42565 1.15717 1.66049 1.12449 1.19440 0.92599 1.25223 0.97344 0.90224 1.25346 1.00789 1.03617 0.96777 1.69781 1.36784 1.51033 1.04249 0.85463 0.81333 0.78539 0.75936 1.20577 1.23269 1.20941 0.93180 0.93416 0.92988 0.93579 0.90490 0.92660 0.89602 0.75013 0.88115 0.86899 0.74115 0.82861 0.80330 0.81377 0.84885 0.79511 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.18 71.98 0.66 -3.97 16 2 C -0.13 -3.89 5.61 30.60 0.17 -3.72 16 3 C 0.16 5.29 2.59 44.99 0.12 5.41 16 4 H 0.06 1.93 8.08 -2.38 -0.02 1.91 16 5 C 0.12 3.55 5.23 86.38 0.45 4.00 16 6 N -0.70 -19.87 5.39 -463.06 -2.49 -22.37 16 7 C 0.51 13.97 7.90 87.66 0.69 14.66 16 8 O -0.57 -17.55 15.67 -3.01 -0.05 -17.59 16 9 C 0.10 2.46 6.15 85.63 0.53 2.99 16 10 N -0.70 -15.83 5.48 -469.69 -2.57 -18.40 16 11 C 0.56 14.21 7.77 86.79 0.67 14.88 16 12 O -0.57 -18.89 16.35 -3.90 -0.06 -18.95 16 13 C -0.12 -2.42 5.87 -20.09 -0.12 -2.54 16 14 C -0.09 -1.17 9.54 22.53 0.21 -0.95 16 15 C -0.09 -0.75 10.03 22.22 0.22 -0.52 16 16 C -0.12 -1.27 10.02 22.37 0.22 -1.04 16 17 C 0.08 1.31 7.29 22.34 0.16 1.48 16 18 F -0.14 -2.81 17.26 44.97 0.78 -2.03 16 19 C -0.11 -2.32 9.57 22.58 0.22 -2.10 16 20 N -0.73 -31.15 4.51 -322.93 -1.46 -32.61 16 21 C -0.21 -10.40 7.75 84.04 0.65 -9.75 16 22 H 0.08 3.72 7.32 -2.91 -0.02 3.70 16 23 C -0.07 -3.88 5.50 84.87 0.47 -3.42 16 24 N -0.97 -55.81 13.06 21.65 0.28 -55.53 16 25 Si 0.96 43.98 29.55 68.60 2.03 46.01 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.31 -14.65 7.11 99.48 0.71 -13.95 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.89 5.99 -2.38 -0.01 1.88 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.41 12.12 8.14 -92.71 -0.75 11.37 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.42 8.18 5.47 -92.70 -0.51 7.67 16 40 H 0.15 1.47 6.40 -2.91 -0.02 1.46 16 41 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.13 3.10 7.65 -2.91 -0.02 3.08 16 44 H 0.37 17.89 7.80 -92.71 -0.72 17.16 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -66.70 385.02 0.86 -65.84 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.93 Total: 40.22 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.34 Total: 15.41 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -6.24 Total: -128.90 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.11 Total: -36.54 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.70 0.86 -65.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481876247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.179 kcal (2) G-P(sol) polarization free energy of solvation -66.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds