Wall clock time and date at job start Tue Mar 31 2020 19:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46774 * 2 1 4 4 H 1.08994 * 109.47239 * 304.99847 * 3 2 1 5 5 C 1.53004 * 109.47137 * 185.00393 * 3 2 1 6 6 N 1.46498 * 109.47027 * 185.00131 * 5 3 2 7 7 C 1.34785 * 119.99714 * 179.97438 * 6 5 3 8 8 O 1.21563 * 119.99781 * 359.97438 * 7 6 5 9 9 C 1.47731 * 119.99894 * 180.02562 * 7 6 5 10 10 C 1.39663 * 120.09129 * 359.97438 * 9 7 6 11 11 C 1.37899 * 120.01764 * 179.97438 * 10 9 7 12 12 C 1.38504 * 120.18950 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.90576 * 179.97438 * 12 11 10 14 14 C 1.39217 * 120.18532 * 0.02562 * 12 11 10 15 15 N 1.40072 * 120.00913 * 180.02562 * 14 12 11 16 16 C 1.34771 * 120.00349 * 145.07576 * 15 14 12 17 17 C 1.50698 * 120.00342 * 184.47018 * 16 15 14 18 18 O 1.21297 * 120.00143 * 4.46523 * 16 15 14 19 19 C 1.38467 * 119.98245 * 359.74824 * 14 12 11 20 20 N 1.46492 * 109.47367 * 65.00417 * 3 2 1 21 21 C 1.36943 * 120.00025 * 275.00154 * 20 3 2 22 22 H 1.08003 * 119.99676 * 359.97438 * 21 20 3 23 23 C 1.38809 * 120.00098 * 179.97438 * 21 20 3 24 24 N 1.31621 * 119.99950 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00210 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47209 * 89.99266 * 25 23 21 27 27 H 1.48497 * 109.47071 * 209.99534 * 25 23 21 28 28 H 1.48507 * 109.46856 * 329.99779 * 25 23 21 29 29 H 1.08994 * 109.47642 * 59.99935 * 1 2 3 30 30 H 1.09007 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47162 * 299.99535 * 1 2 3 32 32 H 1.09006 * 109.47162 * 240.00465 * 2 1 3 33 33 H 1.08994 * 109.47642 * 120.00065 * 2 1 3 34 34 H 1.08996 * 109.47013 * 64.99583 * 5 3 2 35 35 H 1.09004 * 109.46773 * 305.00236 * 5 3 2 36 36 H 0.96998 * 120.00227 * 0.27177 * 6 5 3 37 37 H 1.08004 * 119.98858 * 359.97438 * 10 9 7 38 38 H 1.07995 * 119.90749 * 180.02562 * 11 10 9 39 39 H 0.97006 * 119.99968 * 325.06696 * 15 14 12 40 40 H 1.09001 * 109.47307 * 89.99856 * 17 16 15 41 41 H 1.09007 * 109.46938 * 209.99876 * 17 16 15 42 42 H 1.08997 * 109.46808 * 329.99331 * 17 16 15 43 43 H 1.08006 * 120.10031 * 180.25482 * 19 14 12 44 44 H 0.97001 * 120.00404 * 94.99589 * 20 3 2 45 45 H 0.97000 * 120.00087 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4445 -0.1258 6 7 4.0629 2.8170 -0.0060 7 6 5.3856 3.0632 -0.0860 8 8 6.1653 2.1463 -0.2570 9 6 5.8880 4.4471 0.0354 10 6 4.9940 5.5018 0.2325 11 6 5.4647 6.7930 0.3461 12 6 6.8236 7.0486 0.2659 13 9 7.2784 8.3158 0.3775 14 6 7.7220 6.0034 0.0696 15 7 9.0956 6.2660 -0.0104 16 6 9.9811 5.3808 0.4883 17 6 11.4521 5.7080 0.4934 18 8 9.5941 4.3208 0.9330 19 6 7.2579 4.7035 -0.0408 20 7 1.6524 2.0975 1.2518 21 6 0.4155 2.6734 1.3689 22 1 -0.2741 2.6451 0.5382 23 6 0.0482 3.2936 2.5552 24 7 -1.1405 3.8476 2.6675 25 14 1.2413 3.3432 3.9917 26 1 2.0763 4.5676 3.8996 27 1 0.4803 3.3576 5.2668 28 1 2.1157 2.1435 3.9505 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0378 -1.0961 35 1 3.9954 0.8312 0.6658 36 1 3.4412 3.5480 0.1351 37 1 3.9338 5.3061 0.2959 38 1 4.7718 7.6072 0.4989 39 1 9.4095 7.0849 -0.4249 40 1 11.7088 6.2128 1.4247 41 1 12.0294 4.7873 0.4081 42 1 11.6821 6.3603 -0.3489 43 1 7.9535 3.8907 -0.1890 44 1 2.2719 2.1232 1.9977 45 1 -1.3971 4.2813 3.4964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481881423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:45 Heat of formation + Delta-G solvation = -79.412102 kcal Electronic energy + Delta-G solvation = -28948.243717 eV Core-core repulsion = 24687.574633 eV Total energy + Delta-G solvation = -4260.669085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.26916 -40.84295 -39.75239 -38.12319 -36.83135 -35.19126 -33.88244 -32.39388 -31.36477 -31.03067 -30.27973 -29.05431 -27.93824 -24.49390 -23.52423 -23.14305 -22.25133 -21.02388 -20.41370 -20.08745 -18.75570 -17.84909 -17.43326 -17.35826 -16.77025 -16.35859 -15.90980 -15.57176 -15.52066 -15.32390 -14.64949 -14.49084 -14.21778 -13.95036 -13.91889 -13.53245 -13.21586 -13.15325 -13.00743 -12.94128 -12.85623 -12.75248 -12.54864 -12.27208 -11.77672 -11.55908 -11.18644 -10.99842 -10.82150 -10.76544 -10.40622 -10.30836 -10.18987 -10.05353 -9.81237 -9.52061 -9.12809 -9.00903 -8.79921 -8.52234 -7.37967 -5.84779 -3.21033 0.46187 0.92921 2.14136 2.54584 2.77061 3.30725 3.34922 3.37915 3.42757 3.65522 3.81143 4.27800 4.46380 4.52109 4.69364 4.72916 4.83765 4.91682 5.00759 5.14669 5.18230 5.26543 5.37607 5.43025 5.58889 5.75337 5.77993 5.86056 5.88118 5.89780 5.94906 6.05953 6.12093 6.26353 6.44885 6.50826 6.56078 6.58619 6.75253 6.88298 6.92970 7.27620 7.67995 7.74225 7.91156 8.33374 8.37569 9.11526 9.84021 10.03410 11.32727 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.003060 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.996660 B = 9148.407653 C =10267.673869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.111 3.889 6 N -0.710 5.710 7 C 0.555 3.445 8 O -0.540 6.540 9 C -0.122 4.122 10 C -0.067 4.067 11 C -0.139 4.139 12 C 0.093 3.907 13 F -0.135 7.135 14 C 0.099 3.901 15 N -0.672 5.672 16 C 0.508 3.492 17 C -0.169 4.169 18 O -0.516 6.516 19 C -0.039 4.039 20 N -0.747 5.747 21 C -0.242 4.242 22 H 0.095 0.905 23 C 0.009 3.991 24 N -0.930 5.930 25 Si 0.876 3.124 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.409 0.591 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.414 0.586 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.163 0.837 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.514 7.187 -8.227 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.013 4.013 6 N -0.362 5.362 7 C 0.341 3.659 8 O -0.419 6.419 9 C -0.126 4.126 10 C -0.087 4.087 11 C -0.158 4.158 12 C 0.072 3.928 13 F -0.113 7.113 14 C 0.004 3.996 15 N -0.319 5.319 16 C 0.296 3.704 17 C -0.228 4.228 18 O -0.390 6.390 19 C -0.059 4.059 20 N -0.391 5.391 21 C -0.372 4.372 22 H 0.113 0.887 23 C -0.188 4.188 24 N -0.578 5.578 25 Si 0.707 3.293 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.247 0.753 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.251 0.749 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.180 0.820 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.627 5.886 -8.044 22.909 hybrid contribution 0.588 1.178 1.157 1.753 sum 21.214 7.065 -6.887 23.396 Atomic orbital electron populations 1.21780 0.95190 0.99731 1.03760 1.22037 0.97350 0.97808 1.00173 1.20558 0.89757 0.93070 0.90800 0.91824 1.21778 0.95579 0.82224 1.01727 1.45935 1.06809 1.11116 1.72359 1.18049 0.82658 0.87895 0.77274 1.90772 1.56025 1.45520 1.49563 1.19990 0.93643 0.93926 1.05043 1.21374 1.00612 0.91118 0.95572 1.20970 0.92970 0.98626 1.03228 1.17690 0.92486 0.78336 1.04338 1.91488 1.89604 1.36727 1.93509 1.17547 0.83321 0.93224 1.05476 1.43490 1.03538 1.24843 1.59999 1.21117 0.89111 0.83626 0.76517 1.21879 0.90956 1.05203 1.04777 1.90815 1.80334 1.23342 1.44485 1.21294 0.94987 0.95526 0.94127 1.42867 1.16970 1.67658 1.11637 1.19052 0.90855 1.27416 0.99868 0.88701 1.24645 0.96334 1.00350 0.97432 1.69688 1.19284 1.42014 1.26782 0.86685 0.81035 0.77907 0.83700 1.21045 1.21806 1.20309 0.93860 0.94852 0.89370 0.93505 0.92630 0.91143 0.91618 0.75328 0.83628 0.83330 0.74946 0.88300 0.88224 0.89814 0.82010 0.80486 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 16 3 C 0.17 2.90 2.59 -67.93 -0.18 2.73 16 4 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.77 5.23 -4.04 -0.02 1.74 16 6 N -0.71 -11.17 5.34 -61.28 -0.33 -11.49 16 7 C 0.55 9.24 7.77 -12.38 -0.10 9.15 16 8 O -0.54 -10.61 16.34 5.31 0.09 -10.52 16 9 C -0.12 -1.76 5.87 -104.99 -0.62 -2.38 16 10 C -0.07 -0.83 9.53 -39.17 -0.37 -1.20 16 11 C -0.14 -1.52 10.00 -39.61 -0.40 -1.92 16 12 C 0.09 1.04 7.31 -39.12 -0.29 0.75 16 13 F -0.13 -1.38 16.94 2.25 0.04 -1.34 16 14 C 0.10 1.17 6.31 -83.64 -0.53 0.64 16 15 N -0.67 -5.97 5.22 -9.84 -0.05 -6.02 16 16 C 0.51 5.00 7.78 -10.99 -0.09 4.91 16 17 C -0.17 -0.81 10.31 36.00 0.37 -0.44 16 18 O -0.52 -7.69 14.51 5.54 0.08 -7.61 16 19 C -0.04 -0.55 8.24 -39.00 -0.32 -0.87 16 20 N -0.75 -15.71 4.31 -53.43 -0.23 -15.94 16 21 C -0.24 -6.08 8.23 -15.06 -0.12 -6.20 16 22 H 0.10 2.56 7.55 -52.48 -0.40 2.16 16 23 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -27.52 13.97 55.49 0.78 -26.74 16 25 Si 0.88 21.11 27.74 -169.99 -4.71 16.39 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.41 6.20 6.16 -40.82 -0.25 5.95 16 37 H 0.15 1.68 6.39 -52.48 -0.34 1.34 16 38 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.41 2.24 8.66 -40.82 -0.35 1.89 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.16 2.62 5.78 -52.48 -0.30 2.32 16 44 H 0.36 7.83 5.66 -40.82 -0.23 7.60 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -33.52 378.51 -7.19 -40.72 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -6.00 Total: 14.39 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.56 Total: 2.46 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.17 Total: -60.20 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.52 -7.19 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481881423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.692 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds