Wall clock time and date at job start Tue Mar 31 2020 19:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46653 * 2 1 4 4 H 1.09000 * 109.47330 * 55.00501 * 3 2 1 5 5 C 1.53009 * 109.46878 * 175.00227 * 3 2 1 6 6 N 1.46500 * 109.47124 * 175.00000 * 5 3 2 7 7 C 1.34771 * 119.99876 * 179.97438 * 6 5 3 8 8 O 1.21563 * 120.00265 * 359.97438 * 7 6 5 9 9 C 1.47738 * 119.99811 * 179.97438 * 7 6 5 10 10 C 1.39658 * 120.09071 * 0.02562 * 9 7 6 11 11 C 1.37903 * 120.01286 * 179.97438 * 10 9 7 12 12 C 1.38504 * 120.19712 * 359.97438 * 11 10 9 13 13 F 1.35099 * 119.91228 * 179.97438 * 12 11 10 14 14 C 1.39222 * 120.18017 * 0.02562 * 12 11 10 15 15 N 1.40067 * 120.01071 * 179.97438 * 14 12 11 16 16 C 1.34771 * 120.00179 * 145.07068 * 15 14 12 17 17 C 1.50700 * 120.00002 * 184.47059 * 16 15 14 18 18 O 1.21295 * 119.99909 * 4.47678 * 16 15 14 19 19 C 1.38473 * 119.98202 * 359.74476 * 14 12 11 20 20 N 1.46498 * 109.47126 * 294.99602 * 3 2 1 21 21 C 1.36939 * 119.99917 * 85.00381 * 20 3 2 22 22 H 1.08005 * 119.99709 * 0.02562 * 21 20 3 23 23 C 1.38807 * 120.00158 * 179.97438 * 21 20 3 24 24 N 1.31618 * 120.00265 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99939 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47344 * 60.00396 * 25 23 21 27 27 H 1.48499 * 109.47065 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47225 * 299.99925 * 25 23 21 29 29 H 1.08995 * 109.47347 * 299.99997 * 1 2 3 30 30 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47380 * 60.00214 * 1 2 3 32 32 H 1.08998 * 109.47380 * 119.99786 * 2 1 3 33 33 H 1.08995 * 109.47347 * 240.00003 * 2 1 3 34 34 H 1.09005 * 109.46764 * 294.99656 * 5 3 2 35 35 H 1.08999 * 109.47348 * 54.99606 * 5 3 2 36 36 H 0.97000 * 119.99630 * 359.97438 * 6 5 3 37 37 H 1.07997 * 119.99293 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.90223 * 179.97438 * 11 10 9 39 39 H 0.96997 * 120.00050 * 325.07911 * 15 14 12 40 40 H 1.09004 * 109.47163 * 90.00395 * 17 16 15 41 41 H 1.09004 * 109.47298 * 209.99811 * 17 16 15 42 42 H 1.08995 * 109.47446 * 330.00089 * 17 16 15 43 43 H 1.07999 * 120.09518 * 180.25436 * 19 14 12 44 44 H 0.97004 * 120.00408 * 265.00333 * 20 3 2 45 45 H 0.96996 * 120.00280 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0629 2.8169 0.0059 7 6 5.3855 3.0632 0.0868 8 8 6.1650 2.1466 0.2595 9 6 5.8879 4.4472 -0.0346 10 6 4.9939 5.5018 -0.2326 11 6 5.4646 6.7931 -0.3451 12 6 6.8232 7.0491 -0.2618 13 9 7.2781 8.3164 -0.3734 14 6 7.7216 6.0040 -0.0646 15 7 9.0949 6.2669 0.0185 16 6 9.8718 5.5377 0.8437 17 6 11.3289 5.8850 1.0092 18 8 9.3984 4.6019 1.4530 19 6 7.2567 4.7050 0.0541 20 7 1.6523 2.0975 -1.2518 21 6 0.4155 2.6734 -1.3689 22 1 -0.2741 2.6452 -0.5381 23 6 0.0484 3.2944 -2.5548 24 7 0.8890 3.3293 -3.5670 25 14 -1.6385 4.0807 -2.7141 26 1 -1.7868 5.1463 -1.6905 27 1 -1.7833 4.6716 -4.0688 28 1 -2.6869 3.0489 -2.5101 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.8498 1.0378 1.0960 35 1 3.9954 0.8312 -0.6659 36 1 3.4408 3.5484 -0.1316 37 1 3.9339 5.3060 -0.2975 38 1 4.7718 7.6073 -0.4986 39 1 9.4867 6.9738 -0.5178 40 1 11.4423 6.5960 1.8276 41 1 11.8949 4.9806 1.2328 42 1 11.7036 6.3294 0.0872 43 1 7.9517 3.8934 0.2113 44 1 2.2718 2.1232 -1.9978 45 1 0.6323 3.7629 -4.3958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481881427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:48 Heat of formation + Delta-G solvation = -83.436750 kcal Electronic energy + Delta-G solvation = -28814.070171 eV Core-core repulsion = 24553.226564 eV Total energy + Delta-G solvation = -4260.843607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.19204 -40.76054 -39.63350 -38.01147 -36.65098 -35.11366 -33.75576 -32.40979 -31.29288 -30.93265 -29.75969 -28.92941 -27.72107 -24.43852 -23.44070 -23.34750 -22.25923 -20.94693 -20.28935 -19.93464 -18.59193 -17.64734 -17.30864 -17.18497 -16.68918 -16.27615 -15.83233 -15.48468 -15.32586 -15.22024 -14.60039 -14.41380 -14.03969 -13.91440 -13.85121 -13.45876 -13.22177 -13.09809 -13.02905 -12.82835 -12.79128 -12.63881 -12.35246 -12.04867 -11.69481 -11.43997 -10.98417 -10.90017 -10.76154 -10.73315 -10.45516 -10.21536 -10.12360 -10.05546 -9.69533 -9.55080 -9.02603 -8.97865 -8.65317 -8.42454 -7.06411 -5.83949 -3.13458 0.56620 1.02542 2.20584 2.62121 2.88522 3.37568 3.43357 3.44466 3.48144 3.78421 3.89306 4.33922 4.51685 4.55275 4.76408 4.83442 4.93629 4.96419 5.10142 5.24363 5.38168 5.42170 5.44209 5.55485 5.68145 5.86841 5.91204 5.94915 5.97023 5.97629 6.04321 6.16701 6.23078 6.42195 6.53547 6.57255 6.60030 6.66661 6.87851 6.95185 7.01877 7.23710 7.63654 7.74178 7.89824 8.33257 8.52107 9.45200 10.00077 10.36283 11.37665 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.002868 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.145221 B = 9760.779023 C =11441.536894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.705 5.705 7 C 0.555 3.445 8 O -0.544 6.544 9 C -0.119 4.119 10 C -0.064 4.064 11 C -0.139 4.139 12 C 0.092 3.908 13 F -0.136 7.136 14 C 0.098 3.902 15 N -0.671 5.671 16 C 0.508 3.492 17 C -0.169 4.169 18 O -0.517 6.517 19 C -0.039 4.039 20 N -0.722 5.722 21 C -0.238 4.238 22 H 0.073 0.927 23 C -0.010 4.010 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.414 0.586 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.162 0.838 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.156 8.090 7.482 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.356 5.356 7 C 0.341 3.659 8 O -0.423 6.423 9 C -0.123 4.123 10 C -0.083 4.083 11 C -0.158 4.158 12 C 0.070 3.930 13 F -0.114 7.114 14 C 0.003 3.997 15 N -0.318 5.318 16 C 0.296 3.704 17 C -0.228 4.228 18 O -0.391 6.391 19 C -0.060 4.060 20 N -0.364 5.364 21 C -0.369 4.369 22 H 0.090 0.910 23 C -0.207 4.207 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.247 0.753 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.250 0.750 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.179 0.821 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.272 6.874 8.084 19.426 hybrid contribution -0.892 1.475 -0.897 1.944 sum 15.380 8.349 7.187 18.918 Atomic orbital electron populations 1.21769 0.95719 0.99647 1.03236 1.22063 0.96956 0.98354 1.00086 1.20580 0.89860 0.92894 0.91447 0.92764 1.21720 0.95645 0.82291 1.01342 1.45883 1.06716 1.11061 1.71989 1.18029 0.82732 0.87840 0.77288 1.90763 1.56108 1.45577 1.49810 1.19999 0.93659 0.94030 1.04649 1.21368 1.00664 0.91057 0.95233 1.20952 0.92887 0.98624 1.03383 1.17685 0.92223 0.77835 1.05240 1.91480 1.89585 1.36758 1.93624 1.17538 0.83397 0.92659 1.06079 1.43479 1.05767 1.38405 1.44164 1.21097 0.89342 0.81984 0.77939 1.21877 0.91257 1.05201 1.04488 1.90806 1.75017 1.27686 1.45580 1.21290 0.95330 0.95153 0.94193 1.42466 1.16774 1.65879 1.11302 1.19158 0.91993 1.27774 0.97993 0.90951 1.24724 0.97982 1.01581 0.96376 1.69648 1.35207 1.48864 1.03974 0.86352 0.84336 0.79237 0.76734 1.21292 1.21818 1.21297 0.94122 0.94883 0.89662 0.93799 0.92490 0.91619 0.91600 0.75265 0.83596 0.83462 0.74971 0.88358 0.88255 0.89824 0.82068 0.78059 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.28 5.61 -26.73 -0.15 -2.43 16 3 C 0.16 2.95 2.59 -67.93 -0.18 2.77 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.11 1.94 5.23 -4.04 -0.02 1.92 16 6 N -0.70 -11.84 5.34 -61.28 -0.33 -12.17 16 7 C 0.55 9.80 7.77 -12.38 -0.10 9.70 16 8 O -0.54 -11.23 16.34 5.31 0.09 -11.14 16 9 C -0.12 -1.82 5.87 -104.99 -0.62 -2.44 16 10 C -0.06 -0.83 9.53 -39.17 -0.37 -1.21 16 11 C -0.14 -1.61 10.00 -39.61 -0.40 -2.00 16 12 C 0.09 1.07 7.31 -39.12 -0.29 0.79 16 13 F -0.14 -1.46 16.94 2.25 0.04 -1.42 16 14 C 0.10 1.22 6.31 -83.64 -0.53 0.69 16 15 N -0.67 -6.32 5.22 -9.84 -0.05 -6.37 16 16 C 0.51 5.15 7.78 -10.99 -0.09 5.07 16 17 C -0.17 -0.85 10.31 36.01 0.37 -0.48 16 18 O -0.52 -7.78 14.52 5.54 0.08 -7.70 16 19 C -0.04 -0.58 8.24 -39.00 -0.32 -0.90 16 20 N -0.72 -16.01 4.51 -53.42 -0.24 -16.25 16 21 C -0.24 -5.87 7.75 -15.06 -0.12 -5.99 16 22 H 0.07 1.75 7.33 -52.48 -0.38 1.36 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -26.14 13.06 55.49 0.72 -25.41 16 25 Si 0.90 21.04 29.55 -169.99 -5.02 16.02 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.41 6.72 6.16 -40.82 -0.25 6.47 16 37 H 0.15 1.82 6.39 -52.49 -0.34 1.48 16 38 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.41 2.50 8.66 -40.82 -0.35 2.14 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.16 2.73 5.78 -52.49 -0.30 2.43 16 44 H 0.39 9.40 7.80 -40.82 -0.32 9.09 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -32.15 381.63 -7.55 -39.70 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.04 Total: 16.09 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.55 Total: 2.89 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.11 Total: -60.20 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.84 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.15 -7.55 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481881427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.737 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds