Wall clock time and date at job start Tue Mar 31 2020 19:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46653 * 2 1 4 4 H 1.09000 * 109.47330 * 55.00501 * 3 2 1 5 5 C 1.53009 * 109.46878 * 175.00227 * 3 2 1 6 6 N 1.46500 * 109.47124 * 175.00000 * 5 3 2 7 7 C 1.34771 * 119.99876 * 179.97438 * 6 5 3 8 8 O 1.21563 * 120.00265 * 359.97438 * 7 6 5 9 9 C 1.47738 * 119.99811 * 179.97438 * 7 6 5 10 10 C 1.39658 * 120.09071 * 0.02562 * 9 7 6 11 11 C 1.37903 * 120.01286 * 179.97438 * 10 9 7 12 12 C 1.38504 * 120.19712 * 359.97438 * 11 10 9 13 13 F 1.35099 * 119.91228 * 179.97438 * 12 11 10 14 14 C 1.39222 * 120.18017 * 0.02562 * 12 11 10 15 15 N 1.40067 * 120.01071 * 179.97438 * 14 12 11 16 16 C 1.34771 * 120.00179 * 145.07068 * 15 14 12 17 17 C 1.50700 * 120.00002 * 184.47059 * 16 15 14 18 18 O 1.21295 * 119.99909 * 4.47678 * 16 15 14 19 19 C 1.38473 * 119.98202 * 359.74476 * 14 12 11 20 20 N 1.46498 * 109.47126 * 294.99602 * 3 2 1 21 21 C 1.36939 * 119.99917 * 85.00381 * 20 3 2 22 22 H 1.08005 * 119.99709 * 0.02562 * 21 20 3 23 23 C 1.38807 * 120.00158 * 179.97438 * 21 20 3 24 24 N 1.31618 * 120.00265 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99939 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47344 * 60.00396 * 25 23 21 27 27 H 1.48499 * 109.47065 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47225 * 299.99925 * 25 23 21 29 29 H 1.08995 * 109.47347 * 299.99997 * 1 2 3 30 30 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47380 * 60.00214 * 1 2 3 32 32 H 1.08998 * 109.47380 * 119.99786 * 2 1 3 33 33 H 1.08995 * 109.47347 * 240.00003 * 2 1 3 34 34 H 1.09005 * 109.46764 * 294.99656 * 5 3 2 35 35 H 1.08999 * 109.47348 * 54.99606 * 5 3 2 36 36 H 0.97000 * 119.99630 * 359.97438 * 6 5 3 37 37 H 1.07997 * 119.99293 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.90223 * 179.97438 * 11 10 9 39 39 H 0.96997 * 120.00050 * 325.07911 * 15 14 12 40 40 H 1.09004 * 109.47163 * 90.00395 * 17 16 15 41 41 H 1.09004 * 109.47298 * 209.99811 * 17 16 15 42 42 H 1.08995 * 109.47446 * 330.00089 * 17 16 15 43 43 H 1.07999 * 120.09518 * 180.25436 * 19 14 12 44 44 H 0.97004 * 120.00408 * 265.00333 * 20 3 2 45 45 H 0.96996 * 120.00280 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0629 2.8169 0.0059 7 6 5.3855 3.0632 0.0868 8 8 6.1650 2.1466 0.2595 9 6 5.8879 4.4472 -0.0346 10 6 4.9939 5.5018 -0.2326 11 6 5.4646 6.7931 -0.3451 12 6 6.8232 7.0491 -0.2618 13 9 7.2781 8.3164 -0.3734 14 6 7.7216 6.0040 -0.0646 15 7 9.0949 6.2669 0.0185 16 6 9.8718 5.5377 0.8437 17 6 11.3289 5.8850 1.0092 18 8 9.3984 4.6019 1.4530 19 6 7.2567 4.7050 0.0541 20 7 1.6523 2.0975 -1.2518 21 6 0.4155 2.6734 -1.3689 22 1 -0.2741 2.6452 -0.5381 23 6 0.0484 3.2944 -2.5548 24 7 0.8890 3.3293 -3.5670 25 14 -1.6385 4.0807 -2.7141 26 1 -1.7868 5.1463 -1.6905 27 1 -1.7833 4.6716 -4.0688 28 1 -2.6869 3.0489 -2.5101 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.8498 1.0378 1.0960 35 1 3.9954 0.8312 -0.6659 36 1 3.4408 3.5484 -0.1316 37 1 3.9339 5.3060 -0.2975 38 1 4.7718 7.6073 -0.4986 39 1 9.4867 6.9738 -0.5178 40 1 11.4423 6.5960 1.8276 41 1 11.8949 4.9806 1.2328 42 1 11.7036 6.3294 0.0872 43 1 7.9517 3.8934 0.2113 44 1 2.2718 2.1232 -1.9978 45 1 0.6323 3.7629 -4.3958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481881427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:47 Heat of formation + Delta-G solvation = -105.676899 kcal Electronic energy + Delta-G solvation = -28815.034576 eV Core-core repulsion = 24553.226564 eV Total energy + Delta-G solvation = -4261.808012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11500 -41.74697 -40.85245 -39.14773 -38.20352 -36.07688 -35.29195 -34.14498 -32.12865 -32.01482 -31.43870 -29.84812 -29.08526 -25.92440 -24.94906 -24.40175 -23.60770 -21.89347 -21.61972 -21.28495 -19.73432 -19.10880 -18.55451 -18.23618 -17.68743 -17.39508 -16.98118 -16.81978 -16.50999 -16.21149 -16.18277 -15.67218 -15.45338 -15.26546 -14.85817 -14.78410 -14.55575 -14.35330 -14.18060 -13.98702 -13.84430 -13.51892 -13.39582 -13.06273 -12.96599 -12.76858 -12.72623 -12.67057 -12.35983 -12.12214 -11.86981 -11.71274 -11.62268 -11.31244 -11.14169 -11.03088 -10.84040 -10.20536 -9.94730 -9.40831 -8.95085 -7.83942 -5.11407 -0.51382 -0.00122 1.36422 1.53443 1.54928 1.59861 1.69135 1.86556 2.17355 2.60292 2.62760 2.89367 3.48580 3.53609 3.62955 3.73711 3.89667 3.92879 3.98828 4.03678 4.28965 4.38898 4.47164 4.49412 4.57545 4.62641 4.65265 4.77095 4.81372 4.89157 4.96636 5.04224 5.10448 5.10741 5.14332 5.16925 5.22523 5.44331 5.57566 5.64646 5.66964 5.74077 6.24770 6.35585 6.51349 6.99727 7.13504 7.43913 8.14600 8.40525 9.38556 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.002868 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.145221 B = 9760.779023 C =11441.536894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.062 0.938 5 C 0.120 3.880 6 N -0.700 5.700 7 C 0.553 3.447 8 O -0.582 6.582 9 C -0.137 4.137 10 C -0.063 4.063 11 C -0.130 4.130 12 C 0.103 3.897 13 F -0.125 7.125 14 C 0.099 3.901 15 N -0.661 5.661 16 C 0.502 3.498 17 C -0.158 4.158 18 O -0.573 6.573 19 C -0.055 4.055 20 N -0.727 5.727 21 C -0.216 4.216 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.958 3.042 26 H -0.277 1.277 27 H -0.305 1.305 28 H -0.285 1.285 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.412 0.588 37 H 0.151 0.849 38 H 0.176 0.824 39 H 0.432 0.568 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.407 9.781 8.576 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.080 0.920 5 C -0.004 4.004 6 N -0.351 5.351 7 C 0.341 3.659 8 O -0.463 6.463 9 C -0.141 4.141 10 C -0.083 4.083 11 C -0.149 4.149 12 C 0.081 3.919 13 F -0.103 7.103 14 C 0.003 3.997 15 N -0.309 5.309 16 C 0.293 3.707 17 C -0.217 4.217 18 O -0.451 6.451 19 C -0.076 4.076 20 N -0.368 5.368 21 C -0.348 4.348 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.789 3.211 26 H -0.203 1.203 27 H -0.232 1.232 28 H -0.212 1.212 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.251 0.749 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.272 0.728 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.205 0.795 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.522 8.592 9.208 20.775 hybrid contribution -0.907 0.941 -1.161 1.749 sum 15.615 9.534 8.047 19.987 Atomic orbital electron populations 1.21694 0.95843 1.00581 1.01874 1.21991 0.96716 0.97336 1.01036 1.20710 0.90478 0.93411 0.89724 0.92007 1.21651 0.94708 0.82407 1.01632 1.45846 1.06613 1.11059 1.71568 1.18424 0.82527 0.88634 0.76351 1.90732 1.56917 1.46964 1.51736 1.19853 0.94234 0.93224 1.06760 1.21395 1.00494 0.91176 0.95187 1.21230 0.93333 0.98581 1.01761 1.17628 0.92124 0.77954 1.04201 1.91514 1.89484 1.35908 1.93390 1.17561 0.85097 0.91905 1.05139 1.43541 1.04599 1.38662 1.44119 1.22126 0.91124 0.80795 0.76657 1.21933 0.87065 1.05830 1.06894 1.90793 1.76341 1.30171 1.47801 1.21104 0.94886 0.95770 0.95821 1.42576 1.15854 1.66106 1.12258 1.19447 0.92457 1.25382 0.97527 0.90188 1.25335 1.00773 1.03470 0.96624 1.69797 1.36783 1.50918 1.04277 0.85448 0.81154 0.78536 0.76010 1.20264 1.23186 1.21216 0.93089 0.92957 0.93187 0.90746 0.93624 0.90151 0.92895 0.74937 0.83106 0.80663 0.72823 0.86383 0.88346 0.86574 0.84634 0.79531 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.18 71.98 0.66 -4.09 16 2 C -0.13 -4.23 5.61 30.59 0.17 -4.05 16 3 C 0.17 5.83 2.59 45.00 0.12 5.95 16 4 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 5 C 0.12 4.07 5.23 86.38 0.45 4.52 16 6 N -0.70 -23.77 5.34 -466.06 -2.49 -26.26 16 7 C 0.55 20.21 7.77 86.76 0.67 20.88 16 8 O -0.58 -25.17 16.34 -3.91 -0.06 -25.23 16 9 C -0.14 -4.29 5.87 -20.10 -0.12 -4.40 16 10 C -0.06 -1.61 9.53 22.53 0.21 -1.40 16 11 C -0.13 -2.74 10.00 22.25 0.22 -2.52 16 12 C 0.10 2.20 7.31 22.57 0.17 2.37 16 13 F -0.12 -2.30 16.94 44.97 0.76 -1.54 16 14 C 0.10 2.39 6.31 38.12 0.24 2.63 16 15 N -0.66 -11.62 5.22 -303.43 -1.59 -13.21 16 16 C 0.50 9.89 7.78 87.66 0.68 10.57 16 17 C -0.16 -1.24 10.31 71.24 0.73 -0.51 16 18 O -0.57 -17.94 14.52 -3.07 -0.04 -17.98 16 19 C -0.05 -1.69 8.24 22.65 0.19 -1.51 16 20 N -0.73 -32.17 4.51 -322.92 -1.46 -33.62 16 21 C -0.22 -10.55 7.75 84.03 0.65 -9.90 16 22 H 0.08 3.74 7.33 -2.91 -0.02 3.72 16 23 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 24 N -0.97 -55.33 13.06 21.65 0.28 -55.04 16 25 Si 0.96 43.31 29.55 68.60 2.03 45.34 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.05 2.02 5.99 -2.39 -0.01 2.01 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 13.53 6.16 -92.71 -0.57 12.96 16 37 H 0.15 3.66 6.39 -2.91 -0.02 3.64 16 38 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.43 4.18 8.66 -92.71 -0.80 3.38 16 40 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.14 4.96 5.78 -2.91 -0.02 4.94 16 44 H 0.37 18.48 7.80 -92.70 -0.72 17.76 16 45 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -72.00 381.63 1.92 -70.08 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -1.04 Total: 42.12 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 5.52 Total: 15.35 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -5.25 Total: -128.13 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.11 Total: -43.22 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.76 Total: -1.54 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.00 1.92 -70.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481881427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.594 kcal (2) G-P(sol) polarization free energy of solvation -72.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds