Wall clock time and date at job start Tue Mar 31 2020 21:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.52337 * 2 1 4 4 C 1.53044 * 109.49859 * 120.07721 * 2 1 3 5 5 C 1.53044 * 109.53556 * 181.31534 * 4 2 1 6 6 C 1.53187 * 109.31375 * 298.63529 * 5 4 2 7 7 N 1.46931 * 108.77624 * 54.63589 * 6 5 4 8 8 C 1.34782 * 120.63023 * 126.40986 * 7 6 5 9 9 O 1.21280 * 119.99804 * 183.33049 * 8 7 6 10 10 C 1.50703 * 120.00023 * 3.33245 * 8 7 6 11 11 C 1.50694 * 109.47027 * 179.97438 * 10 8 7 12 12 C 1.33646 * 122.74473 * 125.00093 * 11 10 8 13 13 S 1.76201 * 107.91968 * 180.02562 * 12 11 10 14 14 C 1.70979 * 90.28494 * 359.97438 * 13 12 11 15 15 N 1.29027 * 110.16578 * 359.73831 * 14 13 12 16 16 C 1.46924 * 118.73738 * 306.39094 * 7 6 5 17 17 H 1.08994 * 109.58581 * 293.67713 * 16 7 6 18 18 C 1.53006 * 109.58473 * 173.39339 * 16 7 6 19 19 C 1.52997 * 109.47126 * 291.80224 * 18 16 7 20 20 N 1.46503 * 109.47374 * 173.66551 * 19 18 16 21 21 C 1.36927 * 120.00446 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99930 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00557 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00370 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99526 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47160 * 270.00009 * 25 23 21 27 27 H 1.48501 * 109.46998 * 29.99752 * 25 23 21 28 28 H 1.48500 * 109.46887 * 149.99824 * 25 23 21 29 29 H 1.08997 * 109.46999 * 180.08882 * 1 2 3 30 30 H 1.09007 * 109.46803 * 300.08022 * 1 2 3 31 31 H 1.09000 * 109.47682 * 60.07945 * 1 2 3 32 32 H 1.09002 * 109.45906 * 61.29882 * 4 2 1 33 33 H 1.08997 * 109.45129 * 301.33064 * 4 2 1 34 34 H 1.09001 * 109.49331 * 178.68383 * 5 4 2 35 35 H 1.08998 * 109.49359 * 58.59044 * 5 4 2 36 36 H 1.09004 * 109.59107 * 294.84972 * 6 5 4 37 37 H 1.08997 * 109.70572 * 174.48972 * 6 5 4 38 38 H 1.09000 * 109.47206 * 300.00071 * 10 8 7 39 39 H 1.09005 * 109.46934 * 59.99550 * 10 8 7 40 40 H 1.07993 * 126.03890 * 359.97438 * 12 11 10 41 41 H 1.07996 * 124.91504 * 180.02562 * 14 13 12 42 42 H 1.08996 * 109.46863 * 171.80486 * 18 16 7 43 43 H 1.08994 * 109.47000 * 51.80196 * 18 16 7 44 44 H 1.09002 * 109.47666 * 53.66410 * 19 18 16 45 45 H 1.09000 * 109.47279 * 293.66537 * 19 18 16 46 46 H 0.97001 * 119.99393 * 359.97438 * 20 19 18 47 47 H 0.97001 * 119.99949 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5709 -0.6949 1.2660 6 6 4.1053 -1.4267 0.0308 7 7 3.5045 -0.8291 -1.1696 8 6 4.2811 -0.3864 -2.1784 9 8 3.7770 0.1595 -3.1369 10 6 5.7756 -0.5697 -2.1152 11 6 6.4053 0.0073 -3.3567 12 6 7.3725 0.9287 -3.3153 13 16 7.8171 1.3229 -4.9741 14 6 6.6588 0.2092 -5.5582 15 7 6.0516 -0.3595 -4.5720 16 6 2.0413 -0.7239 -1.2495 17 1 1.6054 -1.7216 -1.3005 18 6 1.6516 0.0704 -2.4979 19 6 2.0825 1.5288 -2.3295 20 7 1.8475 2.2550 -3.5800 21 6 2.1597 3.5853 -3.6683 22 1 2.5795 4.0992 -2.8162 23 6 1.9375 4.2732 -4.8534 24 7 2.2371 5.5520 -4.9381 25 14 1.2120 3.3842 -6.3275 26 1 2.3087 2.8168 -7.1523 27 1 0.3276 2.2876 -5.8580 28 1 0.4231 4.3415 -7.1437 29 1 -0.3633 -1.0276 0.0016 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.6968 -1.7572 1.2354 33 1 1.6582 -0.2242 2.1388 34 1 3.9335 -1.1896 2.1671 35 1 3.9159 0.3390 1.2540 36 1 3.8376 -2.4818 0.0868 37 1 5.1897 -1.3268 -0.0150 38 1 6.1676 -0.0573 -1.2366 39 1 6.0088 -1.6325 -2.0501 40 1 7.8046 1.3566 -2.4228 41 1 6.4667 0.0072 -6.6016 42 1 0.5714 0.0243 -2.6353 43 1 2.1474 -0.3566 -3.3696 44 1 3.1430 1.5680 -2.0804 45 1 1.5039 1.9884 -1.5283 46 1 1.4715 1.7931 -4.3457 47 1 2.0815 6.0328 -5.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488999059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:06 Heat of formation + Delta-G solvation = 30.908591 kcal Electronic energy + Delta-G solvation = -28768.515190 eV Core-core repulsion = 25078.843145 eV Total energy + Delta-G solvation = -3689.672044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94984 -40.56833 -38.43132 -37.01819 -35.15454 -33.99417 -33.03235 -32.83802 -30.36376 -29.06886 -27.43562 -26.51606 -25.74138 -24.57421 -23.53930 -22.24056 -21.54759 -20.42234 -20.04854 -19.40083 -18.69492 -17.87719 -17.02426 -16.88506 -16.55473 -16.33362 -15.91310 -15.68830 -15.33486 -15.10838 -14.82648 -14.74226 -14.59273 -14.22827 -14.14530 -13.97102 -13.86654 -13.57616 -13.33252 -13.15825 -13.03832 -12.91945 -12.52937 -12.37778 -12.30504 -12.15254 -12.03175 -11.87484 -11.74364 -11.54944 -11.35724 -11.15618 -10.87677 -10.55005 -10.33137 -9.89928 -9.61554 -9.34865 -9.08686 -8.04410 -5.31929 -0.16155 0.56040 0.83772 1.29378 1.33739 1.41199 1.79087 1.90839 2.27313 2.45214 3.27030 3.31080 3.57715 3.80837 3.86766 3.93356 4.02466 4.07040 4.17539 4.26711 4.32551 4.40634 4.42513 4.50752 4.56373 4.57174 4.66681 4.70435 4.76958 4.87615 4.90309 4.93609 4.96944 5.06160 5.15327 5.22556 5.28969 5.30583 5.39020 5.44450 5.51719 5.60331 5.71681 5.87807 6.21890 6.63732 6.87376 7.08457 7.52381 7.90429 8.09843 9.18340 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.006174 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.085404 B = 4534.183643 C = 7529.193660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.049 0.951 4 C -0.108 4.108 5 C -0.133 4.133 6 C 0.103 3.897 7 N -0.611 5.611 8 C 0.489 3.511 9 O -0.523 6.523 10 C -0.057 4.057 11 C 0.061 3.939 12 C -0.258 4.258 13 S 0.133 5.867 14 C 0.005 3.995 15 N -0.478 5.478 16 C 0.168 3.832 17 H 0.088 0.912 18 C -0.122 4.122 19 C 0.191 3.809 20 N -0.749 5.749 21 C -0.219 4.219 22 H 0.047 0.953 23 C -0.065 4.065 24 N -0.986 5.986 25 Si 0.956 3.044 26 H -0.286 1.286 27 H -0.261 1.261 28 H -0.288 1.288 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.201 0.799 41 H 0.211 0.789 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.020 0.980 45 H -0.005 1.005 46 H 0.358 0.642 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 -21.339 13.372 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.068 0.932 4 C -0.145 4.145 5 C -0.171 4.171 6 C -0.018 4.018 7 N -0.346 5.346 8 C 0.277 3.723 9 O -0.399 6.399 10 C -0.099 4.099 11 C -0.072 4.072 12 C -0.397 4.397 13 S 0.385 5.615 14 C -0.293 4.293 15 N -0.191 5.191 16 C 0.064 3.936 17 H 0.105 0.895 18 C -0.160 4.160 19 C 0.065 3.935 20 N -0.393 5.393 21 C -0.350 4.350 22 H 0.065 0.935 23 C -0.256 4.256 24 N -0.638 5.638 25 Si 0.784 3.216 26 H -0.213 1.213 27 H -0.186 1.186 28 H -0.214 1.214 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.218 0.782 41 H 0.228 0.772 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.038 0.962 45 H 0.013 0.987 46 H 0.190 0.810 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.896 -20.601 12.323 25.965 hybrid contribution -0.960 0.227 -0.691 1.204 sum 8.936 -20.374 11.632 25.105 Atomic orbital electron populations 1.21769 0.94235 1.02526 1.01489 1.21599 0.96408 0.99335 0.95258 0.93207 1.21559 0.95740 1.01109 0.96126 1.21931 0.95700 1.00906 0.98583 1.22043 0.99345 0.97802 0.82646 1.48128 1.05865 1.61778 1.18869 1.20863 0.89769 0.78654 0.83006 1.90935 1.73858 1.40446 1.34700 1.20365 0.90776 1.04540 0.94231 1.20047 0.96170 0.97913 0.93039 1.27146 1.05844 1.04725 1.02023 1.83779 1.37232 1.41168 0.99294 1.28694 0.98190 0.98462 1.03924 1.66019 1.25129 1.28564 0.99432 1.21143 0.79892 0.98532 0.94018 0.89458 1.22217 0.98924 0.95176 0.99664 1.20760 0.96333 0.90499 0.85877 1.42636 1.77081 1.06996 1.12592 1.19001 1.32484 0.86053 0.97469 0.93494 1.25374 1.03213 0.96475 1.00499 1.69874 1.56910 1.09453 1.27539 0.85384 0.78433 0.77913 0.79870 1.21282 1.18637 1.21445 0.90822 0.91874 0.94454 0.90140 0.91219 0.87835 0.93135 0.89288 0.87711 0.84974 0.85116 0.78150 0.77204 0.93376 0.89843 0.96193 0.98703 0.81015 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.97 71.98 0.65 -2.51 16 2 C -0.11 -2.48 1.92 -10.72 -0.02 -2.50 16 3 H 0.05 1.51 6.14 -2.39 -0.01 1.50 16 4 C -0.11 -1.62 5.17 30.62 0.16 -1.46 16 5 C -0.13 -1.66 6.08 30.67 0.19 -1.48 16 6 C 0.10 1.30 6.34 86.36 0.55 1.85 16 7 N -0.61 -14.16 2.93 -795.02 -2.33 -16.48 16 8 C 0.49 14.62 6.56 87.66 0.58 15.20 16 9 O -0.52 -21.70 8.90 -3.03 -0.03 -21.73 16 10 C -0.06 -1.25 4.57 29.10 0.13 -1.11 16 11 C 0.06 1.76 5.63 41.52 0.23 2.00 16 12 C -0.26 -6.60 11.07 66.78 0.74 -5.86 16 13 S 0.13 3.39 23.22 -56.49 -1.31 2.08 16 14 C 0.01 0.16 12.23 130.65 1.60 1.75 16 15 N -0.48 -16.09 9.70 -191.55 -1.86 -17.95 16 16 C 0.17 4.33 2.67 44.98 0.12 4.45 16 17 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 18 C -0.12 -4.47 4.16 30.60 0.13 -4.34 16 19 C 0.19 8.78 4.23 86.38 0.37 9.14 16 20 N -0.75 -41.71 5.34 -343.45 -1.84 -43.55 16 21 C -0.22 -14.14 10.47 84.04 0.88 -13.26 16 22 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 23 C -0.06 -4.22 5.50 84.86 0.47 -3.75 16 24 N -0.99 -67.83 13.97 21.65 0.30 -67.52 16 25 Si 0.96 51.53 27.74 68.60 1.90 53.43 16 26 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 27 H -0.26 -13.19 6.52 99.48 0.65 -12.54 16 28 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 1.02 6.81 -2.39 -0.02 1.01 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.86 5.95 -2.39 -0.01 0.85 16 38 H 0.13 2.00 7.44 -2.39 -0.02 1.98 16 39 H 0.13 2.05 8.06 -2.38 -0.02 2.03 16 40 H 0.20 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.21 5.05 8.06 -2.91 -0.02 5.03 16 42 H 0.05 1.71 7.05 -2.39 -0.02 1.70 16 43 H 0.08 3.49 5.69 -24.45 -0.14 3.35 16 44 H 0.02 0.99 5.38 -2.39 -0.01 0.98 16 45 H 0.00 -0.22 6.61 -2.39 -0.02 -0.24 16 46 H 0.36 19.71 5.53 -92.71 -0.51 19.19 16 47 H 0.26 16.73 8.31 -92.71 -0.77 15.95 16 Total: -1.00 -88.11 370.38 1.89 -86.22 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.29 Total: 27.36 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 6.76 Total: -1.87 kcal Atomic # 7 Polarization: -139.79 SS G_CDS: -5.72 Total: -145.51 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.03 Total: -21.73 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 1.90 Total: 53.43 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.31 Total: 2.08 kcal Total: -88.11 1.89 -86.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488999059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.132 kcal (2) G-P(sol) polarization free energy of solvation -88.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds