Wall clock time and date at job start Tue Mar 31 2020 21:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.52660 * 2 1 4 4 C 1.53037 * 109.50006 * 120.08229 * 2 1 3 5 5 C 1.53041 * 109.53935 * 58.58663 * 4 2 1 6 6 C 1.53194 * 109.31289 * 61.36263 * 5 4 2 7 7 N 1.46924 * 108.77622 * 305.36959 * 6 5 4 8 8 C 1.34772 * 120.63003 * 233.58263 * 7 6 5 9 9 O 1.21281 * 120.00304 * 185.51721 * 8 7 6 10 10 C 1.50701 * 120.00307 * 5.52151 * 8 7 6 11 11 C 1.50699 * 109.47392 * 179.97438 * 10 8 7 12 12 C 1.33640 * 122.74759 * 125.00181 * 11 10 8 13 13 S 1.76197 * 107.92455 * 180.02562 * 12 11 10 14 14 C 1.70978 * 90.28244 * 359.97438 * 13 12 11 15 15 N 1.29026 * 110.16522 * 359.73231 * 14 13 12 16 16 C 1.46930 * 118.74242 * 53.60508 * 7 6 5 17 17 H 1.09002 * 109.58383 * 66.32202 * 16 7 6 18 18 C 1.52997 * 109.59213 * 186.60304 * 16 7 6 19 19 C 1.52999 * 109.47387 * 178.28425 * 18 16 7 20 20 N 1.46497 * 109.46824 * 184.85428 * 19 18 16 21 21 C 1.36946 * 119.99439 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00202 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99489 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00237 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99652 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47115 * 90.00169 * 25 23 21 27 27 H 1.48502 * 109.47353 * 210.00007 * 25 23 21 28 28 H 1.48498 * 109.47314 * 330.00086 * 25 23 21 29 29 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47431 * 300.07880 * 1 2 3 31 31 H 1.08999 * 109.47785 * 60.07618 * 1 2 3 32 32 H 1.09003 * 109.46356 * 298.56619 * 4 2 1 33 33 H 1.09002 * 109.45212 * 178.60035 * 4 2 1 34 34 H 1.09001 * 109.49515 * 301.41871 * 5 4 2 35 35 H 1.08995 * 109.50221 * 181.31489 * 5 4 2 36 36 H 1.09001 * 109.59086 * 185.58037 * 6 5 4 37 37 H 1.09004 * 109.58614 * 65.15495 * 6 5 4 38 38 H 1.08995 * 109.46791 * 300.00144 * 10 8 7 39 39 H 1.09004 * 109.46653 * 59.99778 * 10 8 7 40 40 H 1.08001 * 126.03471 * 359.97438 * 12 11 10 41 41 H 1.08002 * 124.91963 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.47054 * 298.28629 * 18 16 7 43 43 H 1.09007 * 109.46511 * 58.28350 * 18 16 7 44 44 H 1.09000 * 109.47042 * 304.85151 * 19 18 16 45 45 H 1.08997 * 109.46712 * 64.85071 * 19 18 16 46 46 H 0.97000 * 120.00660 * 0.02562 * 20 19 18 47 47 H 0.97002 * 120.00025 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2659 6 6 2.0140 -2.9040 0.0306 7 7 1.6515 -2.1381 -1.1696 8 6 0.9747 -2.7220 -2.1783 9 8 0.7686 -2.1097 -3.2048 10 6 0.4740 -4.1357 -2.0309 11 6 -0.2447 -4.5479 -3.2897 12 6 0.0833 -5.6414 -3.9844 13 16 -0.9984 -5.7477 -5.3712 14 6 -1.7847 -4.3116 -4.8786 15 7 -1.2521 -3.8630 -3.7924 16 6 2.0412 -0.7237 -1.2497 17 1 3.1273 -0.6463 -1.3007 18 6 1.4228 -0.0910 -2.4979 19 6 1.7950 1.3919 -2.5558 20 7 1.1093 2.0236 -3.6858 21 6 1.2915 3.3572 -3.9385 22 1 1.9404 3.9432 -3.3045 23 6 0.6414 3.9559 -5.0089 24 7 -0.1498 3.2418 -5.7812 25 14 0.8894 5.7750 -5.3531 26 1 2.0406 5.9521 -6.2743 27 1 -0.3363 6.3319 -5.9799 28 1 1.1610 6.4875 -4.0788 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5151 0.8893 31 1 -0.3635 0.5126 -0.8906 32 1 1.6988 -0.1959 2.1389 33 1 3.1305 -0.7444 1.2350 34 1 0.4133 -2.1355 1.2540 35 1 1.8481 -2.6629 2.1669 36 1 1.5554 -3.8919 -0.0139 37 1 3.0979 -3.0043 0.0866 38 1 1.3177 -4.8038 -1.8584 39 1 -0.2125 -4.1917 -1.1861 40 1 0.8727 -6.3367 -3.7395 41 1 -2.6110 -3.8496 -5.3985 42 1 1.8015 -0.5957 -3.3867 43 1 0.3382 -0.1921 -2.4571 44 1 1.4924 1.8789 -1.6289 45 1 2.8729 1.4911 -2.6833 46 1 0.5262 1.4974 -4.2551 47 1 -0.6044 3.6603 -6.5289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488999060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:09 Heat of formation + Delta-G solvation = 12.257659 kcal Electronic energy + Delta-G solvation = -27968.801710 eV Core-core repulsion = 24278.320900 eV Total energy + Delta-G solvation = -3690.480810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87916 -40.60933 -38.60918 -37.00240 -35.04054 -34.07658 -33.03325 -32.45334 -30.05451 -29.14870 -27.67729 -26.40203 -25.76052 -25.03187 -23.92235 -22.06233 -21.54545 -20.32866 -19.44276 -19.19881 -18.78136 -17.70178 -17.17093 -16.73316 -16.58199 -16.29365 -16.17149 -15.50967 -15.33059 -15.12463 -15.03943 -14.95180 -14.59640 -14.25027 -14.11396 -14.00352 -13.91221 -13.54187 -13.15339 -13.10374 -12.92985 -12.85433 -12.54147 -12.35738 -12.31022 -12.22589 -12.09186 -11.87136 -11.72760 -11.70038 -11.29956 -11.19613 -10.92243 -10.50904 -10.34731 -9.95854 -9.66217 -9.41350 -9.02516 -7.96321 -5.27345 -0.16843 0.55965 0.82329 1.42328 1.46795 1.55246 1.76559 1.80606 2.23147 2.54049 3.31641 3.35696 3.55664 3.82057 3.89256 3.95988 4.03999 4.09703 4.17021 4.26340 4.28665 4.41496 4.44409 4.48848 4.50588 4.59940 4.65533 4.70972 4.74961 4.79662 4.83616 4.86397 4.94029 5.01853 5.14318 5.19255 5.24574 5.28113 5.34929 5.41527 5.45318 5.54540 5.59639 5.81913 6.24377 6.59069 6.91076 7.28499 7.41759 8.05819 8.30778 9.28053 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008751 B = 0.003748 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.828639 B = 7469.559546 C =10216.505741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.100 3.900 7 N -0.607 5.607 8 C 0.502 3.498 9 O -0.558 6.558 10 C -0.058 4.058 11 C 0.054 3.946 12 C -0.250 4.250 13 S 0.151 5.849 14 C 0.001 3.999 15 N -0.490 5.490 16 C 0.164 3.836 17 H 0.076 0.924 18 C -0.091 4.091 19 C 0.148 3.852 20 N -0.747 5.747 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.081 4.081 24 N -0.974 5.974 25 Si 0.982 3.018 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.265 1.265 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.211 0.789 41 H 0.206 0.794 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.025 0.975 45 H 0.012 0.988 46 H 0.368 0.632 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.655 -25.617 15.907 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 H 0.090 0.910 4 C -0.146 4.146 5 C -0.172 4.172 6 C -0.021 4.021 7 N -0.341 5.341 8 C 0.291 3.709 9 O -0.436 6.436 10 C -0.100 4.100 11 C -0.079 4.079 12 C -0.389 4.389 13 S 0.403 5.597 14 C -0.296 4.296 15 N -0.204 5.204 16 C 0.060 3.940 17 H 0.094 0.906 18 C -0.129 4.129 19 C 0.021 3.979 20 N -0.389 5.389 21 C -0.381 4.381 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.625 5.625 25 Si 0.810 3.190 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.190 1.190 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.165 0.835 39 H 0.142 0.858 40 H 0.228 0.772 41 H 0.223 0.777 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.030 0.970 46 H 0.199 0.801 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.250 -25.336 14.807 29.525 hybrid contribution -0.159 1.633 -0.424 1.695 sum 3.092 -23.703 14.383 27.897 Atomic orbital electron populations 1.21775 0.95825 1.01370 1.00513 1.21529 0.95870 0.99599 0.95096 0.90975 1.21536 1.01067 0.96079 0.95946 1.21977 1.01302 0.95443 0.98463 1.22127 1.01767 0.95603 0.82582 1.48196 1.56311 1.10466 1.19118 1.21047 0.77566 0.89353 0.82982 1.90868 1.57114 1.64950 1.30657 1.20408 1.01474 0.93378 0.94749 1.20043 0.95243 0.92762 0.99824 1.27216 1.07767 1.04595 0.99297 1.83701 1.26378 1.23977 1.25631 1.28695 1.05271 0.98926 0.96753 1.66044 1.10949 1.31245 1.12176 1.21043 0.98153 0.80517 0.94240 0.90636 1.21907 1.00133 0.92911 0.97904 1.20998 0.94139 0.93062 0.89678 1.42633 1.55477 1.07582 1.33231 1.19720 1.22091 0.86868 1.09409 0.90421 1.25721 1.00102 1.03095 0.98323 1.69891 1.35301 1.37041 1.20281 0.85022 0.76685 0.79201 0.78131 1.21105 1.21940 1.18996 0.92367 0.91883 0.95939 0.90811 0.90637 0.91919 0.87762 0.86963 0.89474 0.83458 0.85761 0.77209 0.77707 0.92474 0.93639 0.95698 0.96986 0.80136 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.20 71.98 0.59 -3.34 16 2 C -0.10 -2.56 2.26 -10.72 -0.02 -2.58 16 3 H 0.07 2.01 6.64 -2.38 -0.02 2.00 16 4 C -0.11 -1.70 5.43 30.62 0.17 -1.54 16 5 C -0.13 -1.51 5.74 30.67 0.18 -1.33 16 6 C 0.10 1.17 6.35 86.36 0.55 1.72 16 7 N -0.61 -14.01 2.41 -795.02 -1.92 -15.93 16 8 C 0.50 14.27 7.50 87.66 0.66 14.93 16 9 O -0.56 -23.01 11.01 -3.03 -0.03 -23.05 16 10 C -0.06 -1.07 4.55 29.10 0.13 -0.94 16 11 C 0.05 1.30 5.63 41.52 0.23 1.54 16 12 C -0.25 -4.50 11.07 66.78 0.74 -3.76 16 13 S 0.15 2.75 23.22 -56.49 -1.31 1.44 16 14 C 0.00 0.03 12.23 130.65 1.60 1.63 16 15 N -0.49 -15.29 9.70 -191.55 -1.86 -17.15 16 16 C 0.16 4.78 2.74 44.97 0.12 4.90 16 17 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.09 -3.78 2.76 30.59 0.08 -3.70 16 19 C 0.15 6.99 5.99 86.38 0.52 7.51 16 20 N -0.75 -44.50 5.60 -343.45 -1.92 -46.43 16 21 C -0.25 -15.47 9.99 84.03 0.84 -14.63 16 22 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 23 C -0.08 -5.06 5.50 84.86 0.47 -4.60 16 24 N -0.97 -65.58 13.06 21.65 0.28 -65.30 16 25 Si 0.98 49.40 29.55 68.60 2.03 51.43 16 26 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 29 H 0.06 1.56 5.97 -2.39 -0.01 1.55 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.02 0.83 6.35 -2.39 -0.02 0.81 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.86 6.33 -2.39 -0.02 0.84 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.11 0.64 5.93 -2.39 -0.01 0.63 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.15 1.32 7.60 -2.39 -0.02 1.30 16 39 H 0.12 1.80 7.92 -2.38 -0.02 1.78 16 40 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.21 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.06 2.74 6.23 -2.39 -0.01 2.73 16 43 H 0.04 2.16 5.52 -2.38 -0.01 2.15 16 44 H 0.03 1.14 6.29 -2.39 -0.02 1.13 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.37 24.02 7.67 -92.71 -0.71 23.31 16 47 H 0.25 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -88.43 373.49 2.39 -86.04 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.28 Total: 33.13 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.85 Total: -4.19 kcal Atomic # 7 Polarization: -139.39 SS G_CDS: -5.42 Total: -144.80 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.03 Total: -23.05 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.44 kcal Total: -88.43 2.39 -86.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488999060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.294 kcal (2) G-P(sol) polarization free energy of solvation -88.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds