Wall clock time and date at job start Tue Mar 31 2020 21:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.50491 * 2 1 4 4 C 1.53038 * 109.49594 * 239.90064 * 2 1 3 5 5 C 1.53041 * 109.54056 * 178.68748 * 4 2 1 6 6 C 1.52763 * 109.38489 * 61.23794 * 5 4 2 7 7 N 1.46922 * 109.00564 * 305.59014 * 6 5 4 8 8 C 1.34774 * 120.62911 * 233.58007 * 7 6 5 9 9 O 1.21285 * 119.99837 * 175.94967 * 8 7 6 10 10 C 1.50700 * 120.00370 * 355.95055 * 8 7 6 11 11 C 1.50703 * 109.47412 * 180.02562 * 10 8 7 12 12 C 1.33637 * 122.75186 * 124.99752 * 11 10 8 13 13 S 1.76189 * 107.92356 * 180.02562 * 12 11 10 14 14 C 1.70975 * 90.28584 * 0.02562 * 13 12 11 15 15 N 1.29030 * 110.16424 * 359.97438 * 14 13 12 16 16 C 1.46925 * 118.74146 * 53.31349 * 7 6 5 17 17 H 1.08998 * 109.58698 * 66.56492 * 16 7 6 18 18 C 1.53001 * 109.59126 * 186.85196 * 16 7 6 19 19 C 1.53002 * 109.47025 * 67.79406 * 18 16 7 20 20 N 1.46495 * 109.46991 * 186.39676 * 19 18 16 21 21 C 1.36939 * 119.99913 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99805 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00001 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99790 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47255 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47242 * 119.99807 * 25 23 21 28 28 H 1.48503 * 109.47023 * 239.99702 * 25 23 21 29 29 H 1.09000 * 109.46953 * 299.93944 * 1 2 3 30 30 H 1.08998 * 109.46951 * 59.93698 * 1 2 3 31 31 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46522 * 298.70531 * 4 2 1 33 33 H 1.09004 * 109.46123 * 58.66822 * 4 2 1 34 34 H 1.08996 * 109.50185 * 181.32179 * 5 4 2 35 35 H 1.09004 * 109.49550 * 301.38385 * 5 4 2 36 36 H 1.09001 * 109.50774 * 185.71280 * 6 5 4 37 37 H 1.08997 * 109.42817 * 65.42785 * 6 5 4 38 38 H 1.08997 * 109.47039 * 59.99844 * 10 8 7 39 39 H 1.08999 * 109.46846 * 299.99840 * 10 8 7 40 40 H 1.08003 * 126.03790 * 0.03462 * 12 11 10 41 41 H 1.07998 * 124.91949 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.47082 * 187.79195 * 18 16 7 43 43 H 1.09001 * 109.46989 * 307.79518 * 18 16 7 44 44 H 1.09003 * 109.47153 * 306.39588 * 19 18 16 45 45 H 1.08999 * 109.47192 * 66.39037 * 19 18 16 46 46 H 0.96999 * 120.00274 * 359.97438 * 20 19 18 47 47 H 0.97001 * 119.99450 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0407 -0.7235 -1.2481 5 6 3.5708 -0.6956 -1.2658 6 6 4.1055 -1.4218 -0.0328 7 7 3.5046 -0.8289 1.1698 8 6 4.2812 -0.3851 2.1779 9 8 3.7780 0.1687 3.1324 10 6 5.7748 -0.5770 2.1193 11 6 6.4049 0.0032 3.3592 12 6 7.2019 -0.7055 4.1645 13 16 7.7150 0.3460 5.4819 14 6 6.8063 1.6338 4.8193 15 7 6.2144 1.2507 3.7387 16 6 2.0413 -0.7235 1.2498 17 1 1.6054 -1.7212 1.3011 18 6 1.6518 0.0712 2.4979 19 6 2.0916 1.5274 2.3332 20 7 1.8576 2.2526 3.5843 21 6 2.1764 3.5813 3.6754 22 1 2.6007 4.0943 2.8251 23 6 1.9542 4.2686 4.8608 24 7 1.4367 3.6434 5.8969 25 14 2.3897 6.0809 4.9853 26 1 2.9529 6.5447 3.6918 27 1 1.1678 6.8629 5.3025 28 1 3.3951 6.2756 6.0607 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6966 -1.7576 -1.2348 33 1 1.6581 -0.2251 -2.1389 34 1 3.9333 -1.1904 -2.1667 35 1 3.9159 0.3383 -1.2547 36 1 5.1895 -1.3161 0.0104 37 1 3.8411 -2.4776 -0.0908 38 1 6.1717 -0.0714 1.2390 39 1 6.0023 -1.6413 2.0606 40 1 7.4821 -1.7400 4.0312 41 1 6.7377 2.6245 5.2438 42 1 0.5707 0.0311 2.6314 43 1 2.1419 -0.3599 3.3708 44 1 3.1530 1.5607 2.0869 45 1 1.5179 1.9917 1.5312 46 1 1.4763 1.7919 4.3480 47 1 1.2811 4.1239 6.7251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488999061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:13 Heat of formation + Delta-G solvation = 57.372990 kcal Electronic energy + Delta-G solvation = -28752.211838 eV Core-core repulsion = 25063.687376 eV Total energy + Delta-G solvation = -3688.524462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79218 -39.45238 -37.31932 -35.13553 -33.58220 -32.62658 -31.87285 -30.67565 -28.86384 -27.60484 -26.36898 -25.10424 -24.42308 -23.18701 -21.97045 -21.14228 -20.37282 -19.20303 -18.64537 -17.66453 -16.92833 -16.55566 -15.86195 -15.62014 -15.16570 -14.78135 -14.59861 -14.38496 -14.03429 -13.70372 -13.51305 -13.33795 -13.08110 -13.03120 -12.95051 -12.65220 -12.45450 -12.40738 -12.06385 -11.77532 -11.65657 -11.26752 -11.20922 -10.99365 -10.77930 -10.72493 -10.57360 -10.33079 -10.11341 -10.04133 -9.70076 -9.41492 -9.30341 -9.21628 -8.72444 -8.61083 -8.37654 -8.09756 -6.48342 -5.47374 -2.69893 0.92797 1.59795 1.91556 2.94875 3.03881 3.34868 3.57190 3.62264 3.65134 4.37522 4.60945 4.73775 4.81456 4.84350 4.92432 4.98556 5.03405 5.22737 5.25531 5.32472 5.36039 5.48565 5.50129 5.62659 5.65912 5.70068 5.77105 5.77406 5.84022 5.84564 5.92380 6.07895 6.12250 6.23714 6.28655 6.38501 6.44614 6.62788 6.72232 6.79546 6.87202 7.34633 7.46512 7.71800 7.95580 8.05904 8.69681 8.72819 9.82834 10.50286 10.84342 11.76889 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.005969 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.503947 B = 4689.819615 C = 7904.154444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.111 3.889 7 N -0.615 5.615 8 C 0.493 3.507 9 O -0.453 6.453 10 C -0.065 4.065 11 C 0.089 3.911 12 C -0.263 4.263 13 S 0.088 5.912 14 C 0.045 3.955 15 N -0.429 5.429 16 C 0.163 3.837 17 H 0.063 0.937 18 C -0.130 4.130 19 C 0.175 3.825 20 N -0.720 5.720 21 C -0.208 4.208 22 H 0.063 0.937 23 C -0.023 4.023 24 N -0.939 5.939 25 Si 0.898 3.102 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.295 1.295 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.172 0.828 41 H 0.199 0.801 42 H 0.048 0.952 43 H 0.099 0.901 44 H 0.033 0.967 45 H -0.006 1.006 46 H 0.380 0.620 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.766 -15.919 -12.714 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.103 0.897 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.013 4.013 7 N -0.352 5.352 8 C 0.279 3.721 9 O -0.324 6.324 10 C -0.107 4.107 11 C -0.045 4.045 12 C -0.402 4.402 13 S 0.341 5.659 14 C -0.254 4.254 15 N -0.141 5.141 16 C 0.060 3.940 17 H 0.081 0.919 18 C -0.167 4.167 19 C 0.048 3.952 20 N -0.362 5.362 21 C -0.340 4.340 22 H 0.081 0.919 23 C -0.218 4.218 24 N -0.590 5.590 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.190 0.810 41 H 0.215 0.785 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.050 0.950 45 H 0.011 0.989 46 H 0.213 0.787 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.871 -15.132 -11.605 21.950 hybrid contribution -0.277 0.578 -0.445 0.780 sum 10.593 -14.554 -12.050 21.662 Atomic orbital electron populations 1.21784 0.94588 1.01377 1.02460 1.21659 0.96087 1.01050 0.94037 0.89680 1.21578 0.94879 1.00523 0.98065 1.21853 0.96630 1.01622 0.97384 1.21556 0.98012 0.96887 0.84827 1.47989 1.06474 1.62816 1.17924 1.20194 0.88120 0.79956 0.83817 1.91022 1.72439 1.36178 1.32754 1.20279 0.93652 1.01471 0.95334 1.19687 0.97526 0.89278 0.97985 1.26655 1.08752 1.04977 0.99821 1.83868 1.48250 1.05960 1.27836 1.28498 0.97800 1.03964 0.95171 1.66057 1.18676 1.15103 1.14229 1.21243 0.78559 0.98179 0.95994 0.91936 1.22370 0.99347 0.97849 0.97146 1.20783 0.97039 0.88384 0.89005 1.42189 1.75521 1.07788 1.10661 1.19239 1.31919 0.86289 0.96601 0.91900 1.24614 1.03295 0.97535 0.96337 1.69685 1.51743 1.34860 1.02705 0.86207 0.77390 0.86289 0.77030 1.20883 1.22324 1.22287 0.91519 0.92814 0.93102 0.92163 0.91950 0.91087 0.91342 0.90148 0.91815 0.87945 0.88130 0.81030 0.78472 0.93314 0.88255 0.94972 0.98875 0.78745 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.97 37.16 0.33 -1.44 16 2 C -0.11 -1.41 1.93 -90.50 -0.18 -1.58 16 3 H 0.08 1.34 6.14 -51.93 -0.32 1.02 16 4 C -0.11 -1.09 5.17 -26.69 -0.14 -1.23 16 5 C -0.14 -1.18 6.06 -26.83 -0.16 -1.35 16 6 C 0.11 0.98 6.31 -3.93 -0.02 0.95 16 7 N -0.62 -8.06 2.93 -165.48 -0.49 -8.54 16 8 C 0.49 7.82 6.56 -10.99 -0.07 7.75 16 9 O -0.45 -9.53 8.83 5.55 0.05 -9.48 16 10 C -0.06 -0.79 4.58 -29.03 -0.13 -0.92 16 11 C 0.09 1.33 5.64 -84.23 -0.47 0.86 16 12 C -0.26 -3.27 11.07 29.12 0.32 -2.95 16 13 S 0.09 1.11 23.22 -107.50 -2.50 -1.39 16 14 C 0.05 0.73 12.23 51.59 0.63 1.36 16 15 N -0.43 -7.94 9.68 -11.90 -0.12 -8.05 16 16 C 0.16 2.33 2.67 -67.60 -0.18 2.15 16 17 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.13 -2.46 4.16 -26.73 -0.11 -2.57 16 19 C 0.17 4.05 4.23 -4.04 -0.02 4.03 16 20 N -0.72 -20.50 5.53 -59.91 -0.33 -20.83 16 21 C -0.21 -6.43 9.99 -15.06 -0.15 -6.58 16 22 H 0.06 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 24 N -0.94 -30.68 13.06 55.49 0.72 -29.95 16 25 Si 0.90 24.15 29.55 -169.99 -5.02 19.13 16 26 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 28 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 29 H 0.07 0.97 6.80 -51.93 -0.35 0.62 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.56 5.96 -51.93 -0.31 0.25 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 1.10 7.52 -51.93 -0.39 0.70 16 39 H 0.10 0.86 7.97 -51.93 -0.41 0.45 16 40 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.20 2.91 8.06 -52.49 -0.42 2.49 16 42 H 0.05 0.92 7.03 -51.93 -0.37 0.55 16 43 H 0.10 2.13 5.75 -53.04 -0.30 1.83 16 44 H 0.03 0.80 5.31 -51.93 -0.28 0.53 16 45 H -0.01 -0.14 6.61 -51.93 -0.34 -0.49 16 46 H 0.38 11.57 7.67 -40.82 -0.31 11.25 16 47 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -37.60 373.35 -9.66 -47.26 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.16 Total: 8.59 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.45 Total: -2.36 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -0.21 Total: -67.38 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.05 Total: -9.48 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.02 Total: 19.13 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.50 Total: -1.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.60 -9.66 -47.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488999061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.637 kcal (2) G-P(sol) polarization free energy of solvation -37.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds