Wall clock time and date at job start Tue Mar 31 2020 21:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.50491 * 2 1 4 4 C 1.53038 * 109.49594 * 239.90064 * 2 1 3 5 5 C 1.53041 * 109.54056 * 178.68748 * 4 2 1 6 6 C 1.52763 * 109.38489 * 61.23794 * 5 4 2 7 7 N 1.46922 * 109.00564 * 305.59014 * 6 5 4 8 8 C 1.34774 * 120.62911 * 233.58007 * 7 6 5 9 9 O 1.21285 * 119.99837 * 175.94967 * 8 7 6 10 10 C 1.50700 * 120.00370 * 355.95055 * 8 7 6 11 11 C 1.50703 * 109.47412 * 180.02562 * 10 8 7 12 12 C 1.33637 * 122.75186 * 124.99752 * 11 10 8 13 13 S 1.76189 * 107.92356 * 180.02562 * 12 11 10 14 14 C 1.70975 * 90.28584 * 0.02562 * 13 12 11 15 15 N 1.29030 * 110.16424 * 359.97438 * 14 13 12 16 16 C 1.46925 * 118.74146 * 53.31349 * 7 6 5 17 17 H 1.08998 * 109.58698 * 66.56492 * 16 7 6 18 18 C 1.53001 * 109.59126 * 186.85196 * 16 7 6 19 19 C 1.53002 * 109.47025 * 67.79406 * 18 16 7 20 20 N 1.46495 * 109.46991 * 186.39676 * 19 18 16 21 21 C 1.36939 * 119.99913 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99805 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00001 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99790 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47255 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47242 * 119.99807 * 25 23 21 28 28 H 1.48503 * 109.47023 * 239.99702 * 25 23 21 29 29 H 1.09000 * 109.46953 * 299.93944 * 1 2 3 30 30 H 1.08998 * 109.46951 * 59.93698 * 1 2 3 31 31 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46522 * 298.70531 * 4 2 1 33 33 H 1.09004 * 109.46123 * 58.66822 * 4 2 1 34 34 H 1.08996 * 109.50185 * 181.32179 * 5 4 2 35 35 H 1.09004 * 109.49550 * 301.38385 * 5 4 2 36 36 H 1.09001 * 109.50774 * 185.71280 * 6 5 4 37 37 H 1.08997 * 109.42817 * 65.42785 * 6 5 4 38 38 H 1.08997 * 109.47039 * 59.99844 * 10 8 7 39 39 H 1.08999 * 109.46846 * 299.99840 * 10 8 7 40 40 H 1.08003 * 126.03790 * 0.03462 * 12 11 10 41 41 H 1.07998 * 124.91949 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.47082 * 187.79195 * 18 16 7 43 43 H 1.09001 * 109.46989 * 307.79518 * 18 16 7 44 44 H 1.09003 * 109.47153 * 306.39588 * 19 18 16 45 45 H 1.08999 * 109.47192 * 66.39037 * 19 18 16 46 46 H 0.96999 * 120.00274 * 359.97438 * 20 19 18 47 47 H 0.97001 * 119.99450 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0407 -0.7235 -1.2481 5 6 3.5708 -0.6956 -1.2658 6 6 4.1055 -1.4218 -0.0328 7 7 3.5046 -0.8289 1.1698 8 6 4.2812 -0.3851 2.1779 9 8 3.7780 0.1687 3.1324 10 6 5.7748 -0.5770 2.1193 11 6 6.4049 0.0032 3.3592 12 6 7.2019 -0.7055 4.1645 13 16 7.7150 0.3460 5.4819 14 6 6.8063 1.6338 4.8193 15 7 6.2144 1.2507 3.7387 16 6 2.0413 -0.7235 1.2498 17 1 1.6054 -1.7212 1.3011 18 6 1.6518 0.0712 2.4979 19 6 2.0916 1.5274 2.3332 20 7 1.8576 2.2526 3.5843 21 6 2.1764 3.5813 3.6754 22 1 2.6007 4.0943 2.8251 23 6 1.9542 4.2686 4.8608 24 7 1.4367 3.6434 5.8969 25 14 2.3897 6.0809 4.9853 26 1 2.9529 6.5447 3.6918 27 1 1.1678 6.8629 5.3025 28 1 3.3951 6.2756 6.0607 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6966 -1.7576 -1.2348 33 1 1.6581 -0.2251 -2.1389 34 1 3.9333 -1.1904 -2.1667 35 1 3.9159 0.3383 -1.2547 36 1 5.1895 -1.3161 0.0104 37 1 3.8411 -2.4776 -0.0908 38 1 6.1717 -0.0714 1.2390 39 1 6.0023 -1.6413 2.0606 40 1 7.4821 -1.7400 4.0312 41 1 6.7377 2.6245 5.2438 42 1 0.5707 0.0311 2.6314 43 1 2.1419 -0.3599 3.3708 44 1 3.1530 1.5607 2.0869 45 1 1.5179 1.9917 1.5312 46 1 1.4763 1.7919 4.3480 47 1 1.2811 4.1239 6.7251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488999061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:12 Heat of formation + Delta-G solvation = 30.767513 kcal Electronic energy + Delta-G solvation = -28753.365538 eV Core-core repulsion = 25063.687376 eV Total energy + Delta-G solvation = -3689.678162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92719 -40.55156 -38.42132 -36.83713 -35.11806 -33.93958 -32.92730 -32.54698 -30.18403 -28.92922 -27.38273 -26.48065 -25.76095 -24.74429 -23.61505 -22.17713 -21.52973 -20.32225 -19.81782 -19.05604 -18.67609 -17.85492 -17.05707 -16.68965 -16.65345 -16.19876 -15.82995 -15.62981 -15.45449 -15.10048 -14.74494 -14.61501 -14.50741 -14.24061 -14.08821 -13.96733 -13.73887 -13.38589 -13.15960 -13.15094 -12.91858 -12.85334 -12.53965 -12.35831 -12.24281 -12.15420 -11.98827 -11.87398 -11.65994 -11.52071 -11.34519 -11.13896 -10.78685 -10.42926 -10.30110 -9.85207 -9.61348 -9.27134 -8.78675 -7.89735 -5.14018 -0.14406 0.58492 0.84462 1.38908 1.42004 1.51996 1.85050 1.91803 2.32297 2.56754 3.37125 3.42053 3.66325 3.84137 3.92670 3.99565 4.07685 4.16004 4.19942 4.32516 4.34068 4.43168 4.45684 4.53299 4.60599 4.65815 4.67664 4.73485 4.79459 4.89654 4.91567 4.95278 4.98615 5.08990 5.15468 5.24865 5.30400 5.30751 5.39931 5.45444 5.54320 5.56683 5.60994 5.91721 6.32915 6.67175 6.99010 7.36787 7.57259 8.20861 8.44165 9.35420 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.005969 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.503947 B = 4689.819615 C = 7904.154444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.047 0.953 4 C -0.107 4.107 5 C -0.134 4.134 6 C 0.103 3.897 7 N -0.612 5.612 8 C 0.483 3.517 9 O -0.519 6.519 10 C -0.056 4.056 11 C 0.056 3.944 12 C -0.248 4.248 13 S 0.147 5.853 14 C -0.001 4.001 15 N -0.481 5.481 16 C 0.168 3.832 17 H 0.087 0.913 18 C -0.114 4.114 19 C 0.190 3.810 20 N -0.730 5.730 21 C -0.222 4.222 22 H 0.058 0.942 23 C -0.082 4.082 24 N -0.974 5.974 25 Si 0.970 3.030 26 H -0.272 1.272 27 H -0.289 1.289 28 H -0.291 1.291 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.214 0.786 41 H 0.190 0.810 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.021 0.979 45 H -0.016 1.016 46 H 0.365 0.635 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -18.553 -15.031 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.065 0.935 4 C -0.144 4.144 5 C -0.172 4.172 6 C -0.018 4.018 7 N -0.347 5.347 8 C 0.271 3.729 9 O -0.395 6.395 10 C -0.098 4.098 11 C -0.077 4.077 12 C -0.387 4.387 13 S 0.399 5.601 14 C -0.299 4.299 15 N -0.194 5.194 16 C 0.065 3.935 17 H 0.105 0.895 18 C -0.151 4.151 19 C 0.064 3.936 20 N -0.370 5.370 21 C -0.354 4.354 22 H 0.076 0.924 23 C -0.273 4.273 24 N -0.626 5.626 25 Si 0.800 3.200 26 H -0.197 1.197 27 H -0.216 1.216 28 H -0.218 1.218 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.231 0.769 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.038 0.962 45 H 0.002 0.998 46 H 0.196 0.804 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.548 -17.789 -14.001 25.883 hybrid contribution -0.756 1.320 0.269 1.545 sum 11.792 -16.469 -13.733 24.472 Atomic orbital electron populations 1.21761 0.94321 1.02518 1.01345 1.21585 0.96337 0.99258 0.95345 0.93466 1.21553 0.95694 1.01164 0.96017 1.21867 0.95752 1.00817 0.98802 1.21955 0.99277 0.97986 0.82566 1.48128 1.05737 1.62017 1.18840 1.20950 0.89869 0.78757 0.83281 1.91007 1.73843 1.39283 1.35326 1.20382 0.90451 1.04182 0.94823 1.20110 0.99055 0.88715 0.99812 1.27202 1.06711 1.06395 0.98359 1.83535 1.45962 1.03764 1.26790 1.28502 0.99850 1.05400 0.96129 1.66050 1.19984 1.17676 1.15694 1.21137 0.80028 0.98410 0.93961 0.89489 1.22105 0.98262 0.95611 0.99156 1.20770 0.95992 0.90478 0.86353 1.42387 1.75328 1.07462 1.11841 1.19517 1.31703 0.87527 0.96685 0.92408 1.25467 1.03581 1.02372 0.95866 1.69861 1.52924 1.36720 1.03136 0.85103 0.77145 0.80449 0.77351 1.19691 1.21624 1.21805 0.94807 0.91769 0.90763 0.89965 0.91208 0.87679 0.93552 0.87796 0.88914 0.86467 0.83543 0.76933 0.79296 0.94180 0.90678 0.96166 0.99831 0.80445 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.97 71.98 0.65 -2.77 16 2 C -0.11 -2.66 1.93 -10.71 -0.02 -2.68 16 3 H 0.05 1.54 6.14 -2.39 -0.01 1.53 16 4 C -0.11 -1.73 5.17 30.62 0.16 -1.57 16 5 C -0.13 -1.84 6.06 30.53 0.19 -1.66 16 6 C 0.10 1.40 6.31 86.22 0.54 1.94 16 7 N -0.61 -15.04 2.93 -795.85 -2.34 -17.38 16 8 C 0.48 15.20 6.56 87.66 0.58 15.77 16 9 O -0.52 -22.90 8.83 -3.04 -0.03 -22.93 16 10 C -0.06 -1.26 4.58 29.10 0.13 -1.13 16 11 C 0.06 1.64 5.64 41.52 0.23 1.87 16 12 C -0.25 -5.58 11.07 66.78 0.74 -4.84 16 13 S 0.15 3.55 23.22 -56.49 -1.31 2.24 16 14 C 0.00 -0.03 12.23 130.65 1.60 1.57 16 15 N -0.48 -18.56 9.68 -191.55 -1.85 -20.42 16 16 C 0.17 4.69 2.67 44.98 0.12 4.81 16 17 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.11 -4.56 4.16 30.60 0.13 -4.43 16 19 C 0.19 9.39 4.23 86.38 0.37 9.76 16 20 N -0.73 -44.33 5.53 -343.46 -1.90 -46.22 16 21 C -0.22 -14.36 9.99 84.03 0.84 -13.52 16 22 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 23 C -0.08 -5.27 5.50 84.86 0.47 -4.81 16 24 N -0.97 -66.11 13.06 21.65 0.28 -65.83 16 25 Si 0.97 51.31 29.55 68.60 2.03 53.34 16 26 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 29 H 0.03 1.02 6.80 -2.39 -0.02 1.00 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 36 H 0.10 0.95 5.96 -2.39 -0.01 0.93 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.12 2.23 7.52 -2.39 -0.02 2.21 16 39 H 0.15 1.82 7.97 -2.39 -0.02 1.80 16 40 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.19 6.22 8.06 -2.91 -0.02 6.20 16 42 H 0.04 1.61 7.03 -2.39 -0.02 1.60 16 43 H 0.08 3.44 5.75 -20.02 -0.12 3.33 16 44 H 0.02 1.08 5.31 -2.39 -0.01 1.07 16 45 H -0.02 -0.80 6.61 -2.39 -0.02 -0.81 16 46 H 0.37 23.81 7.67 -92.71 -0.71 23.10 16 47 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -89.25 373.35 1.77 -87.48 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.17 Total: 31.39 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 6.71 Total: -1.68 kcal Atomic # 7 Polarization: -144.04 SS G_CDS: -5.80 Total: -149.85 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.03 Total: -22.93 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.03 Total: 53.34 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.31 Total: 2.24 kcal Total: -89.25 1.77 -87.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488999061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.252 kcal (2) G-P(sol) polarization free energy of solvation -89.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds